Calcium in PDB 4r5o: Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution

The structure of Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution, PDB code: 4r5o was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.39 / 2.64
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	155.545, 155.545, 94.635, 90.00, 90.00, 120.00
R / Rfree (%)	17.6 / 20.3

The structure of Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Calcium atom in the Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution (pdb code 4r5o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution, PDB code: 4r5o:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca506 b:81.5 occ:1.00 OE2 A:GLU58 2.2 96.0 1.0 O C:THR433 2.2 68.7 1.0 O C:HOH601 3.0 43.6 1.0 CD A:GLU58 3.3 92.5 1.0 C C:THR433 3.4 65.4 1.0 OE1 A:GLU58 4.0 79.3 1.0 CA C:VAL434 4.2 57.5 1.0 N C:VAL434 4.2 58.7 1.0 N C:ASP435 4.3 60.4 1.0 CA C:THR433 4.4 62.6 1.0 OG A:SER87 4.4 77.5 1.0 CG A:GLU58 4.4 67.6 1.0 CB C:THR433 4.5 72.0 1.0 N C:THR433 4.7 63.0 1.0 C C:VAL434 4.7 61.8 1.0 CG2 C:THR433 5.0 68.8 1.0

Calcium binding site 2 out of 5 in the Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca507 b:90.2 occ:1.00 O A:HOH632 2.3 57.6 1.0 OD1 A:ASP273 2.5 54.5 1.0 O A:HOH633 2.6 56.4 1.0 O A:HOH631 2.8 65.1 1.0 O A:HOH634 2.9 53.3 1.0 O A:HOH663 3.3 64.3 1.0 CG A:ASP273 3.4 49.4 1.0 OD2 A:ASP273 3.7 52.1 1.0 ND2 A:ASN275 3.9 50.5 1.0 O A:GLY255 4.1 45.2 1.0 NZ A:LYS256 4.4 54.8 1.0 CE A:LYS256 4.7 55.8 1.0 CA A:GLY255 4.7 41.1 1.0 C A:GLY255 4.7 44.0 1.0 CG A:ASN275 4.8 59.1 1.0 CB A:ASP273 4.8 40.2 1.0 CB A:ASN275 5.0 46.9 1.0

Calcium binding site 3 out of 5 in the Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca508 b:99.8 occ:1.00 OD2 A:ASP379 2.7 88.5 1.0 OD1 A:ASP377 2.8 72.6 1.0 OD2 A:ASP377 3.0 86.2 1.0 CG A:ASP377 3.2 75.3 1.0 CG A:ASP379 3.5 82.2 1.0 CB A:ASP379 3.8 68.1 1.0 OD1 A:ASP379 4.6 84.0 1.0 CB A:ASP377 4.6 67.1 1.0

Calcium binding site 4 out of 5 in the Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca509 b:79.7 occ:1.00 OE2 C:GLU58 2.2 95.1 1.0 O A:THR433 2.3 64.0 1.0 O A:HOH651 2.6 53.3 1.0 O A:HOH650 2.7 49.6 1.0 CD C:GLU58 3.4 92.0 1.0 C A:THR433 3.5 60.2 1.0 OE1 C:GLU58 4.1 66.5 1.0 CA A:VAL434 4.3 51.6 1.0 N A:VAL434 4.3 53.1 1.0 O A:HOH649 4.4 74.2 1.0 N A:ASP435 4.5 55.0 1.0 CG C:GLU58 4.5 70.5 1.0 OG C:SER87 4.5 80.0 1.0 CA A:THR433 4.5 56.0 1.0 N A:THR433 4.7 56.6 1.0 CB A:THR433 4.8 69.0 1.0 C A:VAL434 4.9 56.1 1.0 OH A:TYR136 5.0 56.6 1.0

Calcium binding site 5 out of 5 in the Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A Quinonprotein Alcohol Dehydrogenase-Like Protein (BT1487) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.64 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca508 b:91.5 occ:1.00 O B:HOH714 2.5 60.6 1.0 O B:HOH713 2.6 57.5 1.0 NZ B:LYS332 4.2 48.2 1.0 OD2 B:ASP292 4.3 59.8 1.0 OE2 B:GLU313 4.4 56.2 1.0 OD1 B:ASP292 4.4 56.1 1.0 CG B:ASP292 4.7 55.7 1.0 OE1 B:GLU313 4.9 65.8 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.