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Calcium in PDB 4r9x: Crystal Structure of Putative Copper Homeostasis Protein Cutc From Bacillus Anthracis

Protein crystallography data

The structure of Crystal Structure of Putative Copper Homeostasis Protein Cutc From Bacillus Anthracis, PDB code: 4r9x was solved by Y.Kim, M.Zhou, M.Makowska-Grzyska, S.Grimshaw, W.F.Andesrson, A.Joachimiak, Csgid, Center For Structural Genomics Of Infectiousdiseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.33 / 1.85
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 58.335, 58.335, 118.967, 90.00, 90.00, 120.00
R / Rfree (%) 17.6 / 20.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Putative Copper Homeostasis Protein Cutc From Bacillus Anthracis (pdb code 4r9x). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of Putative Copper Homeostasis Protein Cutc From Bacillus Anthracis, PDB code: 4r9x:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 4r9x

Go back to Calcium Binding Sites List in 4r9x
Calcium binding site 1 out of 3 in the Crystal Structure of Putative Copper Homeostasis Protein Cutc From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Putative Copper Homeostasis Protein Cutc From Bacillus Anthracis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:22.4
occ:1.00
O A:VAL48 2.3 21.4 1.0
O B:HOH461 2.3 24.6 1.0
OE1 B:GLU190 2.4 36.3 1.0
O A:VAL45 2.4 18.4 1.0
OE2 B:GLU190 2.5 37.1 1.0
CD B:GLU190 2.8 42.5 1.0
O A:HOH425 2.9 20.4 1.0
O A:HOH464 3.1 25.5 1.0
C A:VAL48 3.5 20.6 1.0
C A:VAL45 3.5 18.4 1.0
OE1 A:GLN49 4.0 33.4 1.0
CG1 A:VAL45 4.1 14.8 1.0
CA A:GLN49 4.1 23.2 1.0
CA A:VAL45 4.3 13.0 1.0
N A:GLN49 4.3 22.9 1.0
CG B:GLU190 4.3 36.0 1.0
O A:GLU46 4.4 14.5 1.0
N A:VAL48 4.5 18.9 1.0
N A:GLU46 4.5 18.6 1.0
C A:GLU46 4.6 17.4 1.0
CA A:VAL48 4.6 19.8 1.0
CA A:GLU46 4.7 17.1 1.0
C A:GLN49 4.7 23.1 1.0
O A:ILE50 4.7 14.6 1.0
CB A:VAL45 4.8 12.8 1.0
O A:HOH463 4.8 19.8 1.0
CG2 A:VAL48 5.0 13.7 1.0

Calcium binding site 2 out of 3 in 4r9x

Go back to Calcium Binding Sites List in 4r9x
Calcium binding site 2 out of 3 in the Crystal Structure of Putative Copper Homeostasis Protein Cutc From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Putative Copper Homeostasis Protein Cutc From Bacillus Anthracis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:13.9
occ:1.00
OE2 A:GLU71 2.2 14.8 1.0
OD2 A:ASP106 2.3 23.2 1.0
O A:HOH418 2.5 10.4 1.0
CG A:ASP106 3.4 21.4 1.0
CD A:GLU71 3.4 13.9 1.0
O A:HOH412 3.8 14.4 1.0
OD1 A:ASP106 3.8 19.6 1.0
CG A:GLU71 4.1 20.6 1.0
NZ A:LYS74 4.2 15.5 1.0
OE1 A:GLU71 4.4 15.1 1.0
OE1 A:GLU67 4.5 17.2 1.0
CB A:ASP106 4.7 20.8 1.0
CG2 A:ILE70 4.8 13.4 1.0
O A:GLU67 4.8 16.6 1.0

Calcium binding site 3 out of 3 in 4r9x

Go back to Calcium Binding Sites List in 4r9x
Calcium binding site 3 out of 3 in the Crystal Structure of Putative Copper Homeostasis Protein Cutc From Bacillus Anthracis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Putative Copper Homeostasis Protein Cutc From Bacillus Anthracis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca302

b:24.9
occ:1.00
O B:VAL45 2.2 18.0 1.0
O B:HOH465 2.3 20.5 1.0
O B:VAL48 2.5 20.4 1.0
O B:HOH466 2.5 30.2 1.0
O B:HOH423 2.7 14.5 1.0
C B:VAL45 3.4 18.6 1.0
C B:VAL48 3.6 21.1 1.0
CG1 B:VAL45 3.8 18.1 1.0
CA B:VAL45 4.1 15.2 1.0
CA B:GLN49 4.2 25.0 1.0
N B:GLU46 4.3 14.2 1.0
N B:GLN49 4.4 23.3 1.0
CA B:GLU46 4.4 16.9 1.0
N B:VAL48 4.5 15.2 1.0
C B:GLU46 4.6 21.8 1.0
CB B:VAL45 4.6 16.7 1.0
CA B:VAL48 4.7 17.9 1.0
O B:HOH464 4.7 18.9 1.0
C B:GLN49 4.9 29.8 1.0
O B:GLU46 4.9 26.7 1.0

Reference:

Y.Kim, M.Zhou, M.Makowska-Grzyska, S.Grimshaw, W.F.Andesrson, A.Joachimiak, Csgid. Crystal Structure of Putative Copper Homeostasis Protein Cutc From Bacillus Anthracis To Be Published 2014.
Page generated: Sat Dec 12 05:06:51 2020

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