Calcium in PDB 4rgp: Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans

The structure of Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans, PDB code: 4rgp was solved by Y.Kim, H.Li, S.Clancy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.73 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	75.511, 78.238, 92.269, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 24.3

The binding sites of Calcium atom in the Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans (pdb code 4rgp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans, PDB code: 4rgp:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in the Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:64.4 occ:1.00 O A:ASN237 2.5 41.5 1.0 O A:HOH423 2.5 61.5 1.0 O A:HOH419 2.5 36.0 1.0 O A:HOH420 2.5 53.3 1.0 O A:HOH436 2.5 76.1 1.0 O A:HOH422 2.6 65.4 1.0 C A:ASN237 3.7 43.8 1.0 OD1 A:ASN237 3.8 59.4 1.0 O A:HOH431 4.0 71.4 1.0 NE2 A:GLN218 4.1 36.0 1.0 O A:HOH403 4.2 40.1 1.0 CG A:ASN237 4.4 58.5 1.0 NH2 A:ARG91 4.4 46.9 1.0 OE2 A:GLU87 4.4 35.0 1.0 O A:HOH408 4.4 37.8 1.0 CA A:ASP238 4.5 54.2 1.0 O A:ASP238 4.5 55.9 1.0 N A:ASP238 4.5 46.7 1.0 CA A:ASN237 4.6 45.9 1.0 O A:HOH428 4.6 69.8 1.0 C A:ASP238 4.7 53.8 1.0 ND2 A:ASN237 4.9 63.6 1.0

Calcium binding site 2 out of 7 in the Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:56.8 occ:1.00 OE1 A:GLU45 2.4 47.9 1.0 O B:HOH444 2.5 54.4 1.0 OD2 B:ASP205 2.5 52.0 1.0 OE1 A:GLU42 2.5 54.0 1.0 O B:HOH424 2.6 49.1 1.0 O B:HOH432 2.7 48.2 1.0 OE2 A:GLU42 2.9 49.7 1.0 CD A:GLU42 3.0 47.3 1.0 CG B:ASP205 3.6 48.8 1.0 CD A:GLU45 3.7 45.0 1.0 NZ A:LYS41 4.1 68.3 1.0 CB B:ASP205 4.2 46.1 1.0 ND2 A:ASN47 4.3 53.2 1.0 OE1 B:GLU207 4.4 75.5 1.0 OE2 A:GLU45 4.4 48.6 1.0 CB A:GLU45 4.4 38.0 1.0 CG A:GLU42 4.5 42.8 1.0 OD1 B:ASP205 4.6 49.2 1.0 CG A:GLU45 4.7 37.6 1.0 CB A:ASN47 4.8 47.7 1.0 CG A:ASN47 5.0 51.1 1.0

Calcium binding site 3 out of 7 in the Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:80.0 occ:1.00 OD1 A:ASP134 2.4 59.9 1.0 O A:HOH435 2.5 73.7 1.0 OD1 A:ASP127 2.5 91.0 1.0 O A:ALA128 2.6 76.7 1.0 O A:HOH434 2.6 63.6 1.0 CG A:ASP134 3.3 57.2 1.0 N A:ALA128 3.4 76.6 1.0 C A:ALA128 3.6 80.3 1.0 OD2 A:ASP134 3.6 55.7 1.0 CG A:ASP127 3.7 88.4 1.0 C A:ASP127 3.7 78.3 1.0 CA A:ALA128 3.9 76.8 1.0 CA A:ASP127 4.0 77.5 1.0 O A:GLN132 4.3 0.4 1.0 O A:ASP127 4.3 81.3 1.0 CB A:ALA128 4.4 73.2 1.0 CB A:ASP127 4.4 82.2 1.0 OD2 A:ASP127 4.6 91.0 1.0 CB A:ASP134 4.6 56.4 1.0 N A:LYS129 4.8 85.7 1.0 CA A:ASP134 4.8 59.9 1.0 N A:ASP134 4.8 64.7 1.0

Calcium binding site 4 out of 7 in the Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca305 b:83.6 occ:1.00 OE1 A:GLU5 2.5 85.2 1.0 OE2 A:GLU5 2.5 86.6 1.0 O B:HOH467 2.5 61.4 1.0 O B:HOH442 2.5 66.2 1.0 OE2 B:GLU5 2.5 85.8 1.0 O A:HOH444 2.6 65.9 1.0 OE1 B:GLU5 2.8 85.7 1.0 CD A:GLU5 2.8 84.0 1.0 CD B:GLU5 3.0 82.8 1.0 CG A:GLU5 4.4 78.9 1.0 CG B:GLU5 4.5 76.4 1.0 CG2 B:THR2 4.6 73.3 1.0 CG2 A:THR2 4.7 65.2 1.0 CA B:ALA1 4.8 80.9 1.0 O B:ASN0 4.9 94.7 1.0 N B:THR2 4.9 73.5 1.0 CA A:ALA1 5.0 75.6 1.0 N A:THR2 5.0 71.4 1.0

Calcium binding site 5 out of 7 in the Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca301 b:0.3 occ:1.00 O B:HOH438 2.6 60.0 1.0 O B:HOH418 2.6 43.4 1.0 O B:HOH439 2.6 82.6 1.0 O B:HOH440 2.6 66.9 1.0 O B:ASN237 2.8 65.2 1.0 C B:ASN237 3.8 61.5 1.0 OE2 B:GLU87 4.0 46.4 1.0 NH2 B:ARG91 4.2 56.2 1.0 OE1 B:GLN218 4.3 71.6 1.0 O B:HOH451 4.4 60.7 1.0 CA B:ASP238 4.6 68.4 1.0 N B:ASP238 4.7 63.3 1.0 CA B:ASN237 4.7 60.4 1.0 C B:ASP238 4.9 65.1 1.0

Calcium binding site 6 out of 7 in the Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca302 b:60.1 occ:1.00 OE1 B:GLU42 2.4 61.1 1.0 OD2 A:ASP205 2.5 54.9 1.0 O B:HOH445 2.5 62.0 1.0 O A:HOH430 2.5 68.0 1.0 O A:HOH429 2.5 66.0 1.0 OE1 B:GLU45 2.6 60.4 1.0 OE2 B:GLU42 2.6 55.3 1.0 CD B:GLU42 2.8 57.2 1.0 CG A:ASP205 3.6 48.3 1.0 CD B:GLU45 3.8 56.0 1.0 OD1 B:ASN47 4.0 51.0 1.0 CB A:ASP205 4.3 42.6 1.0 CG B:GLU42 4.3 51.9 1.0 OD1 A:ASP205 4.4 50.8 1.0 CB B:GLU45 4.5 46.6 1.0 OE2 B:GLU45 4.5 57.9 1.0 CB B:ASN47 4.7 45.4 1.0 CG B:GLU45 4.7 49.2 1.0 OE2 A:GLU207 4.7 81.7 1.0 CG B:ASN47 4.8 46.2 1.0 NZ B:LYS41 4.8 66.8 1.0

Calcium binding site 7 out of 7 in the Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca303 b:96.7 occ:1.00 OD1 B:ASP127 2.5 85.8 1.0 O B:HOH448 2.5 82.0 1.0 O B:HOH468 2.7 76.9 1.0 OD1 B:ASP134 2.8 60.7 1.0 O B:HOH456 3.2 49.6 1.0 OD2 B:ASP134 3.3 51.0 1.0 O B:ALA128 3.4 95.5 1.0 CG B:ASP134 3.5 54.6 1.0 CG B:ASP127 3.7 86.0 1.0 OD2 B:ASP127 4.2 89.6 1.0 O B:HOH469 4.3 61.3 1.0 C B:ALA128 4.4 97.6 1.0 N B:ALA128 4.5 83.6 1.0 O B:LYS129 4.6 0.0 1.0 CA B:ASP127 4.8 76.4 1.0 CB B:ASP127 4.8 81.9 1.0 C B:ASP127 4.8 78.7 1.0 O B:GLN132 4.9 79.7 1.0 C B:LYS129 4.9 0.6 1.0 OD1 B:ASN130 4.9 0.9 1.0 CB B:ASP134 4.9 54.1 1.0 CA B:ASN130 5.0 0.1 1.0

Y.Kim, H.Li, S.Clancy, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg). Crystal Structure of Uncharacterized Crispr/Cas System-Associated Protein CSM6 From Streptococcus Mutans To Be Published.