Calcium in PDB 4rmk: Crystal Structure of the Olfactomedin Domain of Latrophilin 3 in P65 Crystal Form

The structure of Crystal Structure of the Olfactomedin Domain of Latrophilin 3 in P65 Crystal Form, PDB code: 4rmk was solved by F.M.Ranaivoson, Q.Liu, F.Martini, F.Bergami, S.Von Daake, S.Li, B.Demeler, W.A.Hendrickson, D.Comoletti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.84 / 1.61
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	85.066, 85.066, 66.083, 90.00, 90.00, 120.00
R / Rfree (%)	16.5 / 19

The binding sites of Calcium atom in the Crystal Structure of the Olfactomedin Domain of Latrophilin 3 in P65 Crystal Form (pdb code 4rmk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Olfactomedin Domain of Latrophilin 3 in P65 Crystal Form, PDB code: 4rmk:

Calcium binding site 1 out of 1 in the Crystal Structure of the Olfactomedin Domain of Latrophilin 3 in P65 Crystal Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Olfactomedin Domain of Latrophilin 3 in P65 Crystal Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:11.7 occ:0.71 O A:HOH760 2.4 20.4 1.0 OD2 A:ASP332 2.4 16.6 1.0 O A:ALA381 2.4 14.2 1.0 O A:HOH758 2.4 18.6 1.0 O A:VAL435 2.4 16.7 1.0 OD1 A:ASN380 2.4 16.8 1.0 OD1 A:ASP436 2.6 21.2 0.6 CG A:ASP332 3.1 19.6 1.0 OD1 A:ASP332 3.1 18.5 1.0 OD1 A:ASP436 3.4 26.8 0.4 C A:VAL435 3.5 14.5 1.0 CG A:ASN380 3.6 15.2 1.0 C A:ALA381 3.7 14.5 1.0 CG A:ASP436 3.9 16.1 0.6 O A:HOH757 4.0 13.7 1.0 N A:VAL435 4.1 13.2 1.0 N A:ALA381 4.1 13.1 1.0 ND2 A:ASN380 4.3 14.2 1.0 CA A:VAL435 4.3 15.6 1.0 N A:ASP436 4.4 12.2 1.0 O A:HOH715 4.4 16.8 1.0 O A:HOH702 4.4 16.7 1.0 CA A:ASP436 4.5 14.3 0.6 OH A:TYR323 4.5 15.7 1.0 CA A:ALA381 4.5 13.4 1.0 CG A:ASP436 4.5 20.4 0.4 CA A:ASP436 4.5 14.4 0.4 N A:PHE382 4.6 13.7 1.0 CB A:ASP332 4.6 14.1 1.0 CA A:PHE382 4.6 13.2 1.0 O A:HOH759 4.6 22.6 1.0 CB A:PHE382 4.7 14.9 1.0 OD2 A:ASP436 4.7 20.1 0.6 CB A:VAL435 4.7 13.7 1.0 O A:LEU333 4.7 13.2 1.0 CB A:ASN380 4.8 14.5 1.0 CB A:ASP436 4.8 17.0 0.6

F.M.Ranaivoson, Q.Liu, F.Martini, F.Bergami, S.Von Daake, S.Li, D.Lee, B.Demeler, W.A.Hendrickson, D.Comoletti. Structural and Mechanistic Insights Into the LATROPHILIN3-FLRT3 Complex That Mediates Glutamatergic Synapse Development. Structure V. 23 1665 2015.
ISSN: ISSN 0969-2126
PubMed: 26235031
DOI: 10.1016/J.STR.2015.06.022