Calcium in PDB 4rru: MYC3 N-Terminal Jaz-Binding Domain[5-242] From Arabidopsis

The structure of MYC3 N-Terminal Jaz-Binding Domain[5-242] From Arabidopsis, PDB code: 4rru was solved by J.Ke, F.Zhang, X.E.Zhou, J.S.Brunzelle, M.Zhou, H.E.Xu, K.Melcher, S.Y.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.47 / 2.10
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	85.370, 85.370, 53.746, 90.00, 90.00, 120.00
R / Rfree (%)	23.3 / 27.6

The binding sites of Calcium atom in the MYC3 N-Terminal Jaz-Binding Domain[5-242] From Arabidopsis (pdb code 4rru). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the MYC3 N-Terminal Jaz-Binding Domain[5-242] From Arabidopsis, PDB code: 4rru:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the MYC3 N-Terminal Jaz-Binding Domain[5-242] From Arabidopsis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of MYC3 N-Terminal Jaz-Binding Domain[5-242] From Arabidopsis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:89.2 occ:1.00 O A:GLY93 2.2 69.4 1.0 O A:SER13 2.6 93.0 1.0 C A:GLY93 3.3 62.9 1.0 C A:SER13 3.8 91.4 1.0 CA A:GLY93 3.8 60.9 1.0 CA A:ASP14 4.0 86.0 1.0 N A:ASP14 4.4 84.7 1.0 N A:ASP94 4.4 61.9 1.0 O A:TRP92 4.5 51.8 1.0 OE1 A:GLN74 4.5 60.7 1.0 O A:THR12 4.8 78.1 1.0 CB A:ASP14 4.8 81.2 1.0 N A:GLY93 4.8 56.5 1.0 C A:ASP14 4.8 86.5 1.0 CB A:ASP94 4.9 56.1 1.0 CA A:ASP94 4.9 55.5 1.0 CA A:SER13 4.9 86.6 1.0 CD1 A:LEU52 5.0 67.0 1.0 CD1 A:TRP92 5.0 49.8 1.0

Calcium binding site 2 out of 2 in the MYC3 N-Terminal Jaz-Binding Domain[5-242] From Arabidopsis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of MYC3 N-Terminal Jaz-Binding Domain[5-242] From Arabidopsis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:0.2 occ:1.00 OE1 A:GLU116 3.7 59.6 1.0 OE2 A:GLU116 4.3 65.1 1.0 CD A:GLU116 4.4 62.8 1.0 OD2 A:ASP146 4.5 47.0 1.0 OD1 A:ASP146 4.8 44.3 1.0 O A:HOH436 5.0 67.8 1.0

F.Zhang, J.Yao, J.Ke, L.Zhang, V.Q.Lam, X.F.Xin, X.E.Zhou, J.Chen, J.Brunzelle, P.R.Griffin, M.Zhou, H.E.Xu, K.Melcher, S.Y.He. Structural Basis of Jaz Repression of Myc Transcription Factors in Jasmonate Signalling. Nature V. 525 269 2015.
ISSN: ISSN 0028-0836
PubMed: 26258305
DOI: 10.1038/NATURE14661