Calcium in PDB 4ry0: Crystal Structure of Ribose Transporter Solute Binding Protein RHE_PF00037 From Rhizobium Etli Cfn 42, Target Efi-511357, in Complex with D-Ribose

The structure of Crystal Structure of Ribose Transporter Solute Binding Protein RHE_PF00037 From Rhizobium Etli Cfn 42, Target Efi-511357, in Complex with D-Ribose, PDB code: 4ry0 was solved by Y.Patskovsky, R.Toro, R.Bhosle, N.Al Obaidi, L.L.Morisco, S.R.Wasserman, S.Chamala, J.D.Attonito, A.Scott Glenn, S.Chowdhury, J.Lafleur, B.Hillerich, R.D.Siede, J.Love, K.L.Whalen, J.A.Gerlt, S.C.Almo, Enzymefunction Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.00 / 1.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	93.110, 36.766, 95.480, 90.00, 117.91, 90.00
R / Rfree (%)	14.3 / 18.1

The structure of Crystal Structure of Ribose Transporter Solute Binding Protein RHE_PF00037 From Rhizobium Etli Cfn 42, Target Efi-511357, in Complex with D-Ribose also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Calcium atom in the Crystal Structure of Ribose Transporter Solute Binding Protein RHE_PF00037 From Rhizobium Etli Cfn 42, Target Efi-511357, in Complex with D-Ribose (pdb code 4ry0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Ribose Transporter Solute Binding Protein RHE_PF00037 From Rhizobium Etli Cfn 42, Target Efi-511357, in Complex with D-Ribose, PDB code: 4ry0:

Calcium binding site 1 out of 1 in the Crystal Structure of Ribose Transporter Solute Binding Protein RHE_PF00037 From Rhizobium Etli Cfn 42, Target Efi-511357, in Complex with D-Ribose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Ribose Transporter Solute Binding Protein RHE_PF00037 From Rhizobium Etli Cfn 42, Target Efi-511357, in Complex with D-Ribose within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca403 b:15.8 occ:1.00 OD1 A:ASP177 2.3 12.4 1.0 O A:ASP174 2.3 11.6 1.0 O A:HOH728 2.3 20.5 1.0 OD1 A:ASP178 2.4 16.1 1.0 O A:HOH727 2.5 27.3 1.0 O A:HOH726 2.5 22.1 1.0 CG A:ASP178 3.3 14.5 1.0 CG A:ASP177 3.4 12.4 1.0 C A:ASP174 3.4 10.1 1.0 OD2 A:ASP178 3.6 29.5 1.0 OD2 A:ASP177 3.7 17.0 1.0 CA A:ASP174 3.9 10.3 1.0 N A:ASP178 4.4 10.5 1.0 CB A:ASP174 4.5 14.6 1.0 N A:VAL175 4.5 9.4 1.0 CB A:ASP178 4.6 11.8 1.0 C A:ASP177 4.6 11.4 1.0 CB A:ASP177 4.7 11.6 1.0 O A:HIS173 4.8 14.8 1.0 CA A:VAL175 4.9 10.4 1.0 CA A:ASP178 4.9 11.2 1.0 O A:VAL175 4.9 12.4 1.0 C A:VAL175 5.0 10.7 1.0 CA A:ASP177 5.0 10.0 1.0

Y.Patskovsky, R.Toro, R.Bhosle, N.Al Obaidi, S.Chamala, A.Scott Glenn, J.D.Attonito, S.Chowdhury, J.Lafleur, R.D.Siedel, L.L.Morisco, S.R.Wasserman, B.Hillerich, J.Love, K.L.Whalen, J.A.Gerlt, S.C.Almo. Crystal Structure of Ribose Transporter Solute Binding Protein From Rhizobium Etly, Target Efi-511357 To Be Published.