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Calcium in PDB 4tnh: Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Enzymatic activity of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
All present enzymatic activity of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution:
1.10.3.9;
1.10.3.9;
Protein crystallography data
The structure of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution, PDB code: 4tnh
was solved by
J.Kern,
R.Tran,
R.Alonso-Mori,
S.Koroidov,
N.Echols,
J.Hattne,
M.Ibrahim,
S.Gul,
H.Laksmono,
R.G.Sierra,
R.J.Gildea,
G.Han,
J.Hellmich,
B.Lassalle-Kaiser,
R.Chatterjee,
A.Brewster,
C.A.Stan,
C.Gloeckner,
A.Lampe,
D.Difiore,
D.Milathianaki,
A.R.Fry,
M.M.Seibert,
J.E.Koglin,
E.Gallo,
J.Uhlig,
D.Sokaras,
T.-C.Weng,
P.H.Zwart,
D.E.Skinner,
M.J.Bogan,
M.Messerschmidt,
P.Glatzel,
G.J.Williams,
S.Boutet,
P.D.Adams,
A.Zouni,
J.Messinger,
N.K.Sauter,
U.Bergmann,
J.Yano,
V.K.Yachandra,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 72.93 / 4.90 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 132.885, 229.033, 307.715, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 28.1 / 29.2 |
Other elements in 4tnh:
The structure of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution also contains other interesting chemical elements:
| Magnesium | (Mg) | 70 atoms |
| Manganese | (Mn) | 8 atoms |
| Iron | (Fe) | 6 atoms |
| Chlorine | (Cl) | 2 atoms |
Calcium Binding Sites:
The binding sites of Calcium atom in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
(pdb code 4tnh). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution, PDB code: 4tnh:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Calcium where determined in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution, PDB code: 4tnh:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;
Calcium binding site 1 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 1 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Calcium binding site 2 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 2 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Calcium binding site 3 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 3 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Calcium binding site 4 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 4 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Calcium binding site 5 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 5 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Calcium binding site 6 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 6 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Reference:
J.Kern,
R.Tran,
R.Alonso-Mori,
S.Koroidov,
N.Echols,
J.Hattne,
M.Ibrahim,
S.Gul,
H.Laksmono,
R.G.Sierra,
R.J.Gildea,
G.Han,
J.Hellmich,
B.Lassalle-Kaiser,
R.Chatterjee,
A.S.Brewster,
C.A.Stan,
C.Glockner,
A.Lampe,
D.Difiore,
D.Milathianaki,
A.R.Fry,
M.M.Seibert,
J.E.Koglin,
E.Gallo,
J.Uhlig,
D.Sokaras,
T.C.Weng,
P.H.Zwart,
D.E.Skinner,
M.J.Bogan,
M.Messerschmidt,
P.Glatzel,
G.J.Williams,
S.Boutet,
P.D.Adams,
A.Zouni,
J.Messinger,
N.K.Sauter,
U.Bergmann,
J.Yano,
V.K.Yachandra.
Taking Snapshots of Photosynthetic Water Oxidation Using Femtosecond X-Ray Diffraction and Spectroscopy. Nat Commun V. 5 4371 2014.
ISSN: ESSN 2041-1723
PubMed: 25006873
DOI: 10.1038/NCOMMS5371
Page generated: Sat Dec 12 05:07:55 2020
ISSN: ESSN 2041-1723
PubMed: 25006873
DOI: 10.1038/NCOMMS5371
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