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Calcium in PDB 4u08: Structure of Leptospira Interrogans Lrr Protein LIC11098

Protein crystallography data

The structure of Structure of Leptospira Interrogans Lrr Protein LIC11098, PDB code: 4u08 was solved by W.Shepard, F.A.Saul, A.Haouz, M.Picardeau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.45 / 1.95
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 105.696, 105.696, 161.723, 90.00, 90.00, 120.00
R / Rfree (%) 21 / 23.5

Other elements in 4u08:

The structure of Structure of Leptospira Interrogans Lrr Protein LIC11098 also contains other interesting chemical elements:

Zinc (Zn) 9 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Leptospira Interrogans Lrr Protein LIC11098 (pdb code 4u08). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Leptospira Interrogans Lrr Protein LIC11098, PDB code: 4u08:

Calcium binding site 1 out of 1 in 4u08

Go back to Calcium Binding Sites List in 4u08
Calcium binding site 1 out of 1 in the Structure of Leptospira Interrogans Lrr Protein LIC11098


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Leptospira Interrogans Lrr Protein LIC11098 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca506

b:62.5
occ:1.00
OE2 B:GLU190 2.5 83.2 1.0
OE2 A:GLU190 2.6 66.6 1.0
O B:HOH656 2.6 50.0 1.0
O A:HOH764 2.6 47.4 1.0
OE1 A:GLU213 2.9 49.5 1.0
OE1 B:GLU213 3.2 59.6 1.0
CD B:GLU190 3.4 86.3 1.0
CD A:GLU190 3.5 73.0 1.0
CD A:GLU213 3.7 57.0 1.0
OE2 A:GLU213 3.8 62.2 1.0
CD B:GLU213 3.9 74.0 1.0
O A:HOH616 3.9 38.7 1.0
OE2 B:GLU213 3.9 81.1 1.0
O A:HOH758 3.9 75.1 1.0
OE1 B:GLU190 4.0 88.5 1.0
OE1 A:GLU190 4.2 71.1 1.0
CG A:GLU190 4.4 44.2 1.0
O B:HOH618 4.4 61.3 1.0
CG B:GLU190 4.4 54.9 1.0
CB A:GLU190 4.6 31.1 1.0
O A:HOH770 4.6 66.3 1.0
CB B:GLU190 4.7 33.3 1.0
O B:HOH780 4.9 59.9 1.0
O A:HOH677 5.0 59.4 1.0

Reference:

I.Miras, F.Saul, M.Nowakowski, P.Weber, A.Haouz, W.Shepard, M.Picardeau. Structural Characterization of A Novel Subfamily of Leucine-Rich Repeat Proteins From the Human Pathogen Leptospira Interrogans. Acta Crystallogr.,Sect.D V. 71 1351 2015.
ISSN: ESSN 1399-0047
PubMed: 26057675
DOI: 10.1107/S139900471500704X
Page generated: Sat Dec 12 05:08:30 2020

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