Calcium in PDB 4u8u: The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution.
Protein crystallography data
The structure of The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution., PDB code: 4u8u
was solved by
J.F.R.Bachega,
F.V.Maluf,
B.Andi,
H.D'muniz Pereira,
M.F.Carazzollea,
A.Orville,
M.Tabak,
R.C.Garratt,
E.Horjales,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.66 /
3.20
|
|
Space group
|
I 2 2 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
272.680,
319.900,
333.180,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
21.6 /
23.5
|
Other elements in 4u8u:
The structure of The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution. also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution.
(pdb code 4u8u). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the
The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution., PDB code: 4u8u:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Calcium binding site 1 out
of 9 in 4u8u
Go back to
Calcium Binding Sites List in 4u8u
Calcium binding site 1 out
of 9 in the The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution.
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Ca301
b:28.0
occ:1.00
|
O
|
M:HIS86
|
2.1
|
15.6
|
1.0
|
|
O
|
M:PHE81
|
2.3
|
18.3
|
1.0
|
|
OD2
|
M:ASP94
|
2.3
|
21.9
|
1.0
|
|
OD2
|
M:ASP88
|
2.3
|
18.2
|
1.0
|
|
OD1
|
M:ASP84
|
2.4
|
11.7
|
1.0
|
|
OE2
|
M:GLU95
|
2.5
|
14.9
|
1.0
|
|
C
|
M:HIS86
|
3.3
|
15.6
|
1.0
|
|
CG
|
M:ASP88
|
3.5
|
18.2
|
1.0
|
|
C
|
M:PHE81
|
3.5
|
18.3
|
1.0
|
|
CG
|
M:ASP94
|
3.5
|
21.9
|
1.0
|
|
CG
|
M:ASP84
|
3.5
|
11.7
|
1.0
|
|
CD
|
M:GLU95
|
3.5
|
14.9
|
1.0
|
|
N
|
M:ASP88
|
3.9
|
28.0
|
1.0
|
|
CG
|
M:GLU95
|
4.0
|
14.9
|
1.0
|
|
N
|
M:HIS86
|
4.0
|
15.6
|
1.0
|
|
OD2
|
M:ASP84
|
4.0
|
11.7
|
1.0
|
|
N
|
M:ASP84
|
4.1
|
12.4
|
1.0
|
|
CA
|
M:HIS86
|
4.1
|
15.6
|
1.0
|
|
CB
|
M:ASP88
|
4.1
|
18.2
|
1.0
|
|
N
|
M:LYS87
|
4.2
|
15.4
|
1.0
|
|
NH1
|
B:ARG34
|
4.3
|
28.0
|
1.0
|
|
CA
|
M:PHE81
|
4.3
|
18.3
|
1.0
|
|
CB
|
M:ASP94
|
4.3
|
21.9
|
1.0
|
|
OD1
|
M:ASP94
|
4.3
|
21.9
|
1.0
|
|
N
|
M:CYS83
|
4.4
|
20.9
|
1.0
|
|
CA
|
M:LYS87
|
4.4
|
15.4
|
1.0
|
|
OD1
|
M:ASP88
|
4.4
|
18.2
|
1.0
|
|
CB
|
M:PHE81
|
4.4
|
28.0
|
1.0
|
|
N
|
M:PHE82
|
4.5
|
28.0
|
1.0
|
|
O
|
M:ASP94
|
4.5
|
28.0
|
1.0
|
|
C
|
M:LYS87
|
4.5
|
15.4
|
1.0
|
|
CA
|
M:PHE82
|
4.6
|
28.0
|
1.0
|
|
CB
|
M:HIS86
|
4.6
|
37.8
|
1.0
|
|
OE1
|
M:GLU95
|
4.6
|
14.9
|
1.0
|
|
C
|
M:PHE82
|
4.6
|
28.0
|
1.0
|
|
N
|
M:GLY85
|
4.7
|
18.3
|
1.0
|
|
CB
|
M:ASP84
|
4.7
|
11.7
|
1.0
|
|
CA
|
M:ASP88
|
4.7
|
28.0
|
1.0
|
|
CA
|
M:ASP84
|
4.8
|
12.4
|
1.0
|
|
C
|
M:ASP84
|
4.9
|
12.4
|
1.0
|
|
C
|
M:ASP94
|
4.9
|
28.0
|
1.0
|
|
Calcium binding site 2 out
of 9 in 4u8u
Go back to
Calcium Binding Sites List in 4u8u
Calcium binding site 2 out
of 9 in the The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution.
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Ca301
b:28.0
occ:1.00
|
O
|
N:PHE88
|
2.1
|
14.0
|
1.0
|
|
O
|
N:HIS93
|
2.2
|
12.2
|
1.0
|
|
OD1
|
N:ASP91
|
2.4
|
17.7
|
1.0
|
|
OD2
|
N:ASP95
|
2.4
|
13.7
|
1.0
|
|
OE2
|
N:GLU102
|
2.4
|
16.4
|
1.0
|
|
OD2
|
N:ASP101
|
2.5
|
28.0
|
1.0
|
|
C
|
N:HIS93
|
3.3
|
12.2
|
1.0
|
|
C
|
N:PHE88
|
3.4
|
14.0
|
1.0
|
|
CG
|
N:ASP91
|
3.4
|
17.7
|
1.0
|
|
CD
|
N:GLU102
|
3.4
|
16.4
|
1.0
|
|
CG
|
N:ASP95
|
3.5
|
13.7
|
1.0
|
|
CG
|
N:ASP101
|
3.6
|
28.0
|
1.0
|
|
N
|
N:HIS93
|
3.8
|
12.2
|
1.0
|
|
CG
|
N:GLU102
|
3.8
|
16.4
|
1.0
|
|
CA
|
N:HIS93
|
3.9
|
12.2
|
1.0
|
|
OD2
|
N:ASP91
|
4.0
|
17.7
|
1.0
|
|
N
|
N:ASP91
|
4.0
|
12.6
|
1.0
|
|
CB
|
N:ASP95
|
4.1
|
13.7
|
1.0
|
|
CA
|
N:PHE88
|
4.2
|
14.0
|
1.0
|
|
CB
|
N:PHE88
|
4.2
|
10.3
|
1.0
|
|
N
|
N:ASP95
|
4.2
|
11.1
|
1.0
|
|
CB
|
N:HIS93
|
4.2
|
22.6
|
1.0
|
|
N
|
N:CYS90
|
4.3
|
15.9
|
1.0
|
|
N
|
N:VAL89
|
4.4
|
8.5
|
1.0
|
|
N
|
N:LYS94
|
4.4
|
23.5
|
1.0
|
|
CB
|
N:ASP101
|
4.4
|
28.0
|
1.0
|
|
CB
|
N:ASP91
|
4.5
|
17.7
|
1.0
|
|
CA
|
N:VAL89
|
4.5
|
8.5
|
1.0
|
|
N
|
N:GLY92
|
4.5
|
28.0
|
1.0
|
|
OD1
|
N:ASP95
|
4.5
|
13.7
|
1.0
|
|
OD1
|
N:ASP101
|
4.5
|
28.0
|
1.0
|
|
NH1
|
F:ARG34
|
4.5
|
28.0
|
1.0
|
|
OE1
|
N:GLU102
|
4.5
|
16.4
|
1.0
|
|
CA
|
N:ASP91
|
4.6
|
12.6
|
1.0
|
|
O
|
N:ASP101
|
4.7
|
9.0
|
1.0
|
|
C
|
N:VAL89
|
4.7
|
8.5
|
1.0
|
|
CA
|
N:LYS94
|
4.7
|
23.5
|
1.0
|
|
C
|
N:LYS94
|
4.8
|
23.5
|
1.0
|
|
CA
|
N:ASP95
|
4.8
|
11.1
|
1.0
|
|
C
|
N:ASP91
|
4.9
|
12.6
|
1.0
|
|
C
|
N:GLY92
|
4.9
|
28.0
|
1.0
|
|
C
|
N:ASP101
|
5.0
|
9.0
|
1.0
|
|
C
|
N:CYS90
|
5.0
|
15.9
|
1.0
|
|
CA
|
N:CYS90
|
5.0
|
15.9
|
1.0
|
|
Calcium binding site 3 out
of 9 in 4u8u
Go back to
Calcium Binding Sites List in 4u8u
Calcium binding site 3 out
of 9 in the The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution.
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Ca301
b:28.0
occ:1.00
|
O
|
O:ILE83
|
2.1
|
14.0
|
1.0
|
|
OD2
|
O:ASP85
|
2.3
|
19.4
|
1.0
|
|
O
|
O:LEU78
|
2.3
|
28.0
|
1.0
|
|
OE2
|
O:GLU92
|
2.4
|
21.2
|
1.0
|
|
OD2
|
O:ASP91
|
2.4
|
9.6
|
1.0
|
|
OD1
|
O:ASP81
|
2.4
|
28.0
|
1.0
|
|
C
|
O:ILE83
|
3.3
|
14.0
|
1.0
|
|
CD
|
O:GLU92
|
3.4
|
21.2
|
1.0
|
|
CG
|
O:ASP81
|
3.4
|
28.0
|
1.0
|
|
CG
|
O:ASP85
|
3.5
|
19.4
|
1.0
|
|
CG
|
O:ASP91
|
3.5
|
9.6
|
1.0
|
|
C
|
O:LEU78
|
3.5
|
28.0
|
1.0
|
|
OD2
|
O:ASP81
|
3.8
|
28.0
|
1.0
|
|
CG
|
O:GLU92
|
3.9
|
21.2
|
1.0
|
|
N
|
O:ASP85
|
4.0
|
13.0
|
1.0
|
|
N
|
O:ILE83
|
4.0
|
14.0
|
1.0
|
|
CA
|
O:ILE83
|
4.1
|
14.0
|
1.0
|
|
CB
|
O:ASP85
|
4.1
|
19.4
|
1.0
|
|
NH1
|
J:ARG34
|
4.1
|
28.0
|
1.0
|
|
CB
|
O:ASP91
|
4.2
|
9.6
|
1.0
|
|
N
|
O:ASP81
|
4.3
|
11.0
|
1.0
|
|
N
|
O:LYS84
|
4.3
|
15.9
|
1.0
|
|
CB
|
O:LEU78
|
4.3
|
28.0
|
1.0
|
|
CA
|
O:LEU78
|
4.4
|
28.0
|
1.0
|
|
N
|
O:CYS80
|
4.4
|
9.3
|
1.0
|
|
CA
|
O:LYS84
|
4.4
|
15.9
|
1.0
|
|
CB
|
O:ILE83
|
4.4
|
28.0
|
1.0
|
|
OD1
|
O:ASP85
|
4.4
|
19.4
|
1.0
|
|
C
|
O:LYS84
|
4.5
|
15.9
|
1.0
|
|
OE1
|
O:GLU92
|
4.5
|
21.2
|
1.0
|
|
OD1
|
O:ASP91
|
4.5
|
9.6
|
1.0
|
|
N
|
O:VAL79
|
4.5
|
14.8
|
1.0
|
|
CA
|
O:VAL79
|
4.6
|
14.8
|
1.0
|
|
CB
|
O:ASP81
|
4.7
|
28.0
|
1.0
|
|
CA
|
O:ASP85
|
4.7
|
13.0
|
1.0
|
|
C
|
O:VAL79
|
4.8
|
14.8
|
1.0
|
|
N
|
O:GLY82
|
4.8
|
13.8
|
1.0
|
|
CA
|
O:ASP81
|
4.9
|
11.0
|
1.0
|
|
O
|
O:ASP91
|
5.0
|
17.7
|
1.0
|
|
Calcium binding site 4 out
of 9 in 4u8u
Go back to
Calcium Binding Sites List in 4u8u
Calcium binding site 4 out
of 9 in the The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution.
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Ca301
b:28.0
occ:1.00
|
O
|
b:HIS86
|
2.1
|
17.7
|
1.0
|
|
O
|
b:PHE81
|
2.3
|
12.8
|
1.0
|
|
OD2
|
b:ASP88
|
2.4
|
15.7
|
1.0
|
|
OD2
|
b:ASP94
|
2.4
|
13.3
|
1.0
|
|
OD1
|
b:ASP84
|
2.4
|
28.0
|
1.0
|
|
OE2
|
b:GLU95
|
2.4
|
15.9
|
1.0
|
|
C
|
b:HIS86
|
3.3
|
17.7
|
1.0
|
|
C
|
b:PHE81
|
3.5
|
12.8
|
1.0
|
|
CG
|
b:ASP84
|
3.5
|
28.0
|
1.0
|
|
CG
|
b:ASP88
|
3.5
|
15.7
|
1.0
|
|
CD
|
b:GLU95
|
3.5
|
15.9
|
1.0
|
|
CG
|
b:ASP94
|
3.5
|
13.3
|
1.0
|
|
N
|
b:ASP88
|
4.0
|
28.0
|
1.0
|
|
CG
|
b:GLU95
|
4.0
|
15.9
|
1.0
|
|
N
|
b:HIS86
|
4.0
|
17.7
|
1.0
|
|
OD2
|
b:ASP84
|
4.0
|
28.0
|
1.0
|
|
N
|
b:ASP84
|
4.1
|
23.1
|
1.0
|
|
CA
|
b:HIS86
|
4.1
|
17.7
|
1.0
|
|
CB
|
b:ASP88
|
4.2
|
15.7
|
1.0
|
|
N
|
b:LYS87
|
4.3
|
28.0
|
1.0
|
|
NH1
|
Q:ARG34
|
4.3
|
28.0
|
1.0
|
|
CA
|
b:PHE81
|
4.3
|
12.8
|
1.0
|
|
N
|
b:CYS83
|
4.3
|
21.6
|
1.0
|
|
CB
|
b:ASP94
|
4.4
|
13.3
|
1.0
|
|
OD1
|
b:ASP94
|
4.4
|
13.3
|
1.0
|
|
CA
|
b:LYS87
|
4.4
|
28.0
|
1.0
|
|
CB
|
b:PHE81
|
4.4
|
17.9
|
1.0
|
|
OD1
|
b:ASP88
|
4.4
|
15.7
|
1.0
|
|
N
|
b:PHE82
|
4.4
|
28.0
|
1.0
|
|
O
|
b:ASP94
|
4.5
|
28.0
|
1.0
|
|
CA
|
b:PHE82
|
4.5
|
28.0
|
1.0
|
|
C
|
b:LYS87
|
4.6
|
28.0
|
1.0
|
|
CB
|
b:HIS86
|
4.6
|
38.9
|
1.0
|
|
OE1
|
b:GLU95
|
4.6
|
15.9
|
1.0
|
|
C
|
b:PHE82
|
4.6
|
28.0
|
1.0
|
|
CB
|
b:ASP84
|
4.6
|
28.0
|
1.0
|
|
N
|
b:GLY85
|
4.6
|
6.9
|
1.0
|
|
CA
|
b:ASP84
|
4.7
|
23.1
|
1.0
|
|
CA
|
b:ASP88
|
4.7
|
28.0
|
1.0
|
|
C
|
b:ASP84
|
4.8
|
23.1
|
1.0
|
|
C
|
b:ASP94
|
4.9
|
28.0
|
1.0
|
|
Calcium binding site 5 out
of 9 in 4u8u
Go back to
Calcium Binding Sites List in 4u8u
Calcium binding site 5 out
of 9 in the The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution.
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
c:Ca301
b:28.0
occ:1.00
|
O
|
c:HIS93
|
2.1
|
10.1
|
1.0
|
|
O
|
c:PHE88
|
2.2
|
28.0
|
1.0
|
|
OD2
|
c:ASP95
|
2.4
|
27.8
|
1.0
|
|
OE2
|
c:GLU102
|
2.4
|
21.8
|
1.0
|
|
OD2
|
c:ASP101
|
2.4
|
28.0
|
1.0
|
|
OD1
|
c:ASP91
|
2.4
|
9.2
|
1.0
|
|
C
|
c:HIS93
|
3.3
|
10.1
|
1.0
|
|
C
|
c:PHE88
|
3.4
|
28.0
|
1.0
|
|
CD
|
c:GLU102
|
3.4
|
21.8
|
1.0
|
|
CG
|
c:ASP95
|
3.5
|
27.8
|
1.0
|
|
CG
|
c:ASP91
|
3.5
|
9.2
|
1.0
|
|
CG
|
c:ASP101
|
3.6
|
28.0
|
1.0
|
|
CG
|
c:GLU102
|
3.8
|
21.8
|
1.0
|
|
N
|
c:HIS93
|
3.8
|
10.1
|
1.0
|
|
CA
|
c:HIS93
|
3.9
|
10.1
|
1.0
|
|
CB
|
c:ASP95
|
4.0
|
27.8
|
1.0
|
|
N
|
c:ASP91
|
4.0
|
10.5
|
1.0
|
|
OD2
|
c:ASP91
|
4.1
|
9.2
|
1.0
|
|
N
|
c:ASP95
|
4.1
|
26.3
|
1.0
|
|
CA
|
c:PHE88
|
4.2
|
28.0
|
1.0
|
|
CB
|
c:PHE88
|
4.2
|
17.2
|
1.0
|
|
CB
|
c:HIS93
|
4.2
|
32.8
|
1.0
|
|
N
|
c:CYS90
|
4.3
|
17.1
|
1.0
|
|
N
|
c:LYS94
|
4.4
|
8.6
|
1.0
|
|
CB
|
c:ASP101
|
4.4
|
28.0
|
1.0
|
|
N
|
c:VAL89
|
4.4
|
18.4
|
1.0
|
|
OD1
|
c:ASP101
|
4.4
|
28.0
|
1.0
|
|
OD1
|
c:ASP95
|
4.5
|
27.8
|
1.0
|
|
CA
|
c:VAL89
|
4.5
|
18.4
|
1.0
|
|
OE1
|
c:GLU102
|
4.5
|
21.8
|
1.0
|
|
N
|
c:GLY92
|
4.5
|
28.0
|
1.0
|
|
CB
|
c:ASP91
|
4.5
|
9.2
|
1.0
|
|
NH1
|
U:ARG34
|
4.6
|
28.0
|
1.0
|
|
O
|
c:ASP101
|
4.7
|
13.4
|
1.0
|
|
CA
|
c:LYS94
|
4.7
|
8.6
|
1.0
|
|
CA
|
c:ASP91
|
4.7
|
10.5
|
1.0
|
|
C
|
c:LYS94
|
4.7
|
8.6
|
1.0
|
|
C
|
c:VAL89
|
4.7
|
18.4
|
1.0
|
|
CA
|
c:ASP95
|
4.7
|
26.3
|
1.0
|
|
C
|
c:ASP91
|
4.9
|
10.5
|
1.0
|
|
C
|
c:ASP101
|
4.9
|
13.4
|
1.0
|
|
C
|
c:GLY92
|
5.0
|
28.0
|
1.0
|
|
Calcium binding site 6 out
of 9 in 4u8u
Go back to
Calcium Binding Sites List in 4u8u
Calcium binding site 6 out
of 9 in the The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution.
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
d:Ca301
b:28.0
occ:1.00
|
O
|
d:ILE83
|
2.1
|
22.2
|
1.0
|
|
OD2
|
d:ASP85
|
2.3
|
21.6
|
1.0
|
|
O
|
d:LEU78
|
2.4
|
14.9
|
1.0
|
|
OD2
|
d:ASP91
|
2.4
|
28.0
|
1.0
|
|
OD1
|
d:ASP81
|
2.4
|
14.1
|
1.0
|
|
OE2
|
d:GLU92
|
2.4
|
15.5
|
1.0
|
|
C
|
d:ILE83
|
3.3
|
22.2
|
1.0
|
|
CG
|
d:ASP85
|
3.4
|
21.6
|
1.0
|
|
CG
|
d:ASP81
|
3.4
|
14.1
|
1.0
|
|
CD
|
d:GLU92
|
3.5
|
15.5
|
1.0
|
|
CG
|
d:ASP91
|
3.5
|
28.0
|
1.0
|
|
C
|
d:LEU78
|
3.6
|
14.9
|
1.0
|
|
OD2
|
d:ASP81
|
3.8
|
14.1
|
1.0
|
|
N
|
d:ASP85
|
3.9
|
28.0
|
1.0
|
|
CG
|
d:GLU92
|
4.0
|
15.5
|
1.0
|
|
N
|
d:ILE83
|
4.0
|
22.2
|
1.0
|
|
CA
|
d:ILE83
|
4.1
|
22.2
|
1.0
|
|
CB
|
d:ASP85
|
4.1
|
21.6
|
1.0
|
|
NH1
|
Y:ARG34
|
4.1
|
28.0
|
1.0
|
|
CB
|
d:ASP91
|
4.2
|
28.0
|
1.0
|
|
N
|
d:LYS84
|
4.3
|
9.3
|
1.0
|
|
N
|
d:ASP81
|
4.3
|
28.0
|
1.0
|
|
CB
|
d:LEU78
|
4.3
|
28.0
|
1.0
|
|
CA
|
d:LYS84
|
4.4
|
9.3
|
1.0
|
|
CB
|
d:ILE83
|
4.4
|
28.0
|
1.0
|
|
OD1
|
d:ASP85
|
4.4
|
21.6
|
1.0
|
|
CA
|
d:LEU78
|
4.4
|
14.9
|
1.0
|
|
C
|
d:LYS84
|
4.4
|
9.3
|
1.0
|
|
N
|
d:CYS80
|
4.4
|
8.9
|
1.0
|
|
OD1
|
d:ASP91
|
4.5
|
28.0
|
1.0
|
|
OE1
|
d:GLU92
|
4.5
|
15.5
|
1.0
|
|
N
|
d:VAL79
|
4.5
|
10.4
|
1.0
|
|
CA
|
d:VAL79
|
4.6
|
10.4
|
1.0
|
|
CA
|
d:ASP85
|
4.7
|
28.0
|
1.0
|
|
CB
|
d:ASP81
|
4.7
|
14.1
|
1.0
|
|
N
|
d:GLY82
|
4.8
|
14.9
|
1.0
|
|
C
|
d:VAL79
|
4.8
|
10.4
|
1.0
|
|
CA
|
d:ASP81
|
4.9
|
28.0
|
1.0
|
|
O
|
d:ASP91
|
5.0
|
12.6
|
1.0
|
|
Calcium binding site 7 out
of 9 in 4u8u
Go back to
Calcium Binding Sites List in 4u8u
Calcium binding site 7 out
of 9 in the The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution.
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
q:Ca301
b:28.0
occ:1.00
|
O
|
q:HIS86
|
2.0
|
11.4
|
1.0
|
|
O
|
q:PHE81
|
2.3
|
13.0
|
1.0
|
|
OD1
|
q:ASP84
|
2.4
|
13.0
|
1.0
|
|
OD2
|
q:ASP88
|
2.4
|
14.3
|
1.0
|
|
OD2
|
q:ASP94
|
2.4
|
9.2
|
1.0
|
|
OE2
|
q:GLU95
|
2.4
|
15.2
|
1.0
|
|
C
|
q:HIS86
|
3.2
|
11.4
|
1.0
|
|
CG
|
q:ASP84
|
3.4
|
13.0
|
1.0
|
|
C
|
q:PHE81
|
3.5
|
13.0
|
1.0
|
|
CG
|
q:ASP88
|
3.5
|
14.3
|
1.0
|
|
CD
|
q:GLU95
|
3.5
|
15.2
|
1.0
|
|
CG
|
q:ASP94
|
3.6
|
9.2
|
1.0
|
|
N
|
q:HIS86
|
4.0
|
11.4
|
1.0
|
|
OD2
|
q:ASP84
|
4.0
|
13.0
|
1.0
|
|
CG
|
q:GLU95
|
4.0
|
15.2
|
1.0
|
|
N
|
q:ASP88
|
4.0
|
28.0
|
1.0
|
|
N
|
q:ASP84
|
4.1
|
18.6
|
1.0
|
|
CA
|
q:HIS86
|
4.1
|
11.4
|
1.0
|
|
CB
|
q:ASP88
|
4.2
|
14.3
|
1.0
|
|
N
|
q:LYS87
|
4.2
|
14.1
|
1.0
|
|
NH1
|
f:ARG34
|
4.3
|
28.0
|
1.0
|
|
CA
|
q:PHE81
|
4.3
|
13.0
|
1.0
|
|
N
|
q:CYS83
|
4.3
|
12.9
|
1.0
|
|
CA
|
q:LYS87
|
4.4
|
14.1
|
1.0
|
|
CB
|
q:ASP94
|
4.4
|
9.2
|
1.0
|
|
OD1
|
q:ASP94
|
4.4
|
9.2
|
1.0
|
|
OD1
|
q:ASP88
|
4.4
|
14.3
|
1.0
|
|
CB
|
q:PHE81
|
4.4
|
11.5
|
1.0
|
|
N
|
q:PHE82
|
4.5
|
28.0
|
1.0
|
|
CB
|
q:HIS86
|
4.5
|
49.9
|
1.0
|
|
O
|
q:ASP94
|
4.5
|
14.7
|
1.0
|
|
C
|
q:LYS87
|
4.6
|
14.1
|
1.0
|
|
OE1
|
q:GLU95
|
4.6
|
15.2
|
1.0
|
|
CA
|
q:PHE82
|
4.6
|
28.0
|
1.0
|
|
N
|
q:GLY85
|
4.6
|
16.2
|
1.0
|
|
CB
|
q:ASP84
|
4.6
|
13.0
|
1.0
|
|
C
|
q:PHE82
|
4.6
|
28.0
|
1.0
|
|
CA
|
q:ASP84
|
4.7
|
18.6
|
1.0
|
|
CA
|
q:ASP88
|
4.8
|
28.0
|
1.0
|
|
C
|
q:ASP84
|
4.8
|
18.6
|
1.0
|
|
C
|
q:ASP94
|
5.0
|
14.7
|
1.0
|
|
C
|
q:GLY85
|
5.0
|
16.2
|
1.0
|
|
Calcium binding site 8 out
of 9 in 4u8u
Go back to
Calcium Binding Sites List in 4u8u
Calcium binding site 8 out
of 9 in the The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution.
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
r:Ca301
b:28.0
occ:1.00
|
O
|
r:PHE88
|
2.1
|
28.0
|
1.0
|
|
O
|
r:HIS93
|
2.2
|
19.2
|
1.0
|
|
OD2
|
r:ASP95
|
2.4
|
21.5
|
1.0
|
|
OE2
|
r:GLU102
|
2.4
|
29.2
|
1.0
|
|
OD2
|
r:ASP101
|
2.4
|
17.7
|
1.0
|
|
OD1
|
r:ASP91
|
2.4
|
19.2
|
1.0
|
|
C
|
r:PHE88
|
3.3
|
28.0
|
1.0
|
|
C
|
r:HIS93
|
3.3
|
19.2
|
1.0
|
|
CD
|
r:GLU102
|
3.4
|
29.2
|
1.0
|
|
CG
|
r:ASP91
|
3.5
|
19.2
|
1.0
|
|
CG
|
r:ASP95
|
3.5
|
21.5
|
1.0
|
|
CG
|
r:ASP101
|
3.6
|
17.7
|
1.0
|
|
CG
|
r:GLU102
|
3.8
|
29.2
|
1.0
|
|
N
|
r:HIS93
|
3.9
|
19.2
|
1.0
|
|
CA
|
r:HIS93
|
4.0
|
19.2
|
1.0
|
|
N
|
r:ASP91
|
4.0
|
19.4
|
1.0
|
|
CB
|
r:ASP95
|
4.0
|
21.5
|
1.0
|
|
OD2
|
r:ASP91
|
4.1
|
19.2
|
1.0
|
|
CA
|
r:PHE88
|
4.1
|
28.0
|
1.0
|
|
CB
|
r:PHE88
|
4.2
|
25.0
|
1.0
|
|
N
|
r:ASP95
|
4.2
|
13.5
|
1.0
|
|
N
|
r:CYS90
|
4.2
|
18.6
|
1.0
|
|
CB
|
r:HIS93
|
4.3
|
33.6
|
1.0
|
|
N
|
r:VAL89
|
4.3
|
30.8
|
1.0
|
|
CB
|
r:ASP101
|
4.4
|
17.7
|
1.0
|
|
CA
|
r:VAL89
|
4.4
|
30.8
|
1.0
|
|
N
|
r:LYS94
|
4.4
|
23.7
|
1.0
|
|
OD1
|
r:ASP101
|
4.5
|
17.7
|
1.0
|
|
OD1
|
r:ASP95
|
4.5
|
21.5
|
1.0
|
|
CB
|
r:ASP91
|
4.5
|
19.2
|
1.0
|
|
OE1
|
r:GLU102
|
4.5
|
29.2
|
1.0
|
|
N
|
r:GLY92
|
4.6
|
28.0
|
1.0
|
|
NH1
|
j:ARG34
|
4.6
|
11.9
|
1.0
|
|
O
|
r:ASP101
|
4.6
|
21.3
|
1.0
|
|
CA
|
r:ASP91
|
4.7
|
19.4
|
1.0
|
|
C
|
r:VAL89
|
4.7
|
30.8
|
1.0
|
|
CA
|
r:LYS94
|
4.7
|
23.7
|
1.0
|
|
C
|
r:LYS94
|
4.8
|
23.7
|
1.0
|
|
CA
|
r:ASP95
|
4.8
|
13.5
|
1.0
|
|
C
|
r:ASP101
|
4.9
|
21.3
|
1.0
|
|
C
|
r:ASP91
|
4.9
|
19.4
|
1.0
|
|
CA
|
r:CYS90
|
5.0
|
18.6
|
1.0
|
|
C
|
r:CYS90
|
5.0
|
18.6
|
1.0
|
|
Calcium binding site 9 out
of 9 in 4u8u
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Calcium Binding Sites List in 4u8u
Calcium binding site 9 out
of 9 in the The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution.
 Mono view
 Stereo pair view
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A full contact list of Calcium with other atoms in the Ca binding
site number 9 of The Crystallographic Structure of the Giant Hemoglobin From Glossoscolex Paulistus at 3.2 A Resolution. within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
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s:Ca301
b:28.0
occ:1.00
|
O
|
s:ILE83
|
2.1
|
21.6
|
1.0
|
|
OD2
|
s:ASP85
|
2.3
|
16.0
|
1.0
|
|
OE2
|
s:GLU92
|
2.3
|
21.0
|
1.0
|
|
OD2
|
s:ASP91
|
2.3
|
9.6
|
1.0
|
|
O
|
s:LEU78
|
2.4
|
17.4
|
1.0
|
|
OD1
|
s:ASP81
|
2.4
|
16.2
|
1.0
|
|
C
|
s:ILE83
|
3.3
|
21.6
|
1.0
|
|
CD
|
s:GLU92
|
3.4
|
21.0
|
1.0
|
|
CG
|
s:ASP81
|
3.4
|
16.2
|
1.0
|
|
CG
|
s:ASP85
|
3.4
|
16.0
|
1.0
|
|
CG
|
s:ASP91
|
3.5
|
9.6
|
1.0
|
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C
|
s:LEU78
|
3.6
|
17.4
|
1.0
|
|
OD2
|
s:ASP81
|
3.8
|
16.2
|
1.0
|
|
CG
|
s:GLU92
|
3.9
|
21.0
|
1.0
|
|
N
|
s:ASP85
|
3.9
|
8.2
|
1.0
|
|
N
|
s:ILE83
|
4.0
|
21.6
|
1.0
|
|
NH1
|
n:ARG34
|
4.0
|
28.0
|
1.0
|
|
CA
|
s:ILE83
|
4.1
|
21.6
|
1.0
|
|
CB
|
s:ASP85
|
4.1
|
16.0
|
1.0
|
|
CB
|
s:ASP91
|
4.2
|
9.6
|
1.0
|
|
N
|
s:LYS84
|
4.2
|
13.0
|
1.0
|
|
N
|
s:ASP81
|
4.3
|
28.0
|
1.0
|
|
CB
|
s:LEU78
|
4.4
|
2.7
|
1.0
|
|
CA
|
s:LYS84
|
4.4
|
13.0
|
1.0
|
|
N
|
s:CYS80
|
4.4
|
28.0
|
1.0
|
|
CB
|
s:ILE83
|
4.4
|
28.0
|
1.0
|
|
OD1
|
s:ASP85
|
4.4
|
16.0
|
1.0
|
|
CA
|
s:LEU78
|
4.4
|
17.4
|
1.0
|
|
C
|
s:LYS84
|
4.4
|
13.0
|
1.0
|
|
OE1
|
s:GLU92
|
4.5
|
21.0
|
1.0
|
|
OD1
|
s:ASP91
|
4.5
|
9.6
|
1.0
|
|
N
|
s:VAL79
|
4.5
|
16.1
|
1.0
|
|
CA
|
s:VAL79
|
4.6
|
16.1
|
1.0
|
|
CA
|
s:ASP85
|
4.7
|
8.2
|
1.0
|
|
CB
|
s:ASP81
|
4.7
|
16.2
|
1.0
|
|
C
|
s:VAL79
|
4.8
|
16.1
|
1.0
|
|
N
|
s:GLY82
|
4.8
|
28.0
|
1.0
|
|
CA
|
s:ASP81
|
4.9
|
28.0
|
1.0
|
|
O
|
s:ASP91
|
5.0
|
7.6
|
1.0
|
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Reference:
J.F.Ruggiero Bachega,
F.Vasconcelos Maluf,
B.Andi,
H.D'muniz Pereira,
M.Falsarella Carazzollea,
A.M.Orville,
M.Tabak,
J.Brandao-Neto,
R.C.Garratt,
E.Horjales Reboredo.
The Structure of the Giant Haemoglobin From Glossoscolex Paulistus. Acta Crystallogr.,Sect.D V. 71 1257 2015.
ISSN: ESSN 1399-0047
PubMed: 26057666
DOI: 10.1107/S1399004715005453
Page generated: Sun Jul 14 13:38:02 2024
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