Atomistry » Calcium » PDB 4tx8-4uix » 4uap
Atomistry »
  Calcium »
    PDB 4tx8-4uix »
      4uap »

Calcium in PDB 4uap: X-Ray Structure of GH31 CBM32-2 Bound to Galnac

Protein crystallography data

The structure of X-Ray Structure of GH31 CBM32-2 Bound to Galnac, PDB code: 4uap was solved by J.M.Grondin, K.Abe, A.B.Boraston, S.P.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.41 / 2.00
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.300, 84.750, 86.170, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 19.2

Calcium Binding Sites:

The binding sites of Calcium atom in the X-Ray Structure of GH31 CBM32-2 Bound to Galnac (pdb code 4uap). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the X-Ray Structure of GH31 CBM32-2 Bound to Galnac, PDB code: 4uap:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4uap

Go back to Calcium Binding Sites List in 4uap
Calcium binding site 1 out of 2 in the X-Ray Structure of GH31 CBM32-2 Bound to Galnac


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of GH31 CBM32-2 Bound to Galnac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:7.9
occ:1.00
O A:LYS24 2.3 8.2 1.0
O A:ASN144 2.3 6.5 1.0
OE2 A:GLU145 2.3 10.3 1.0
O A:SER36 2.4 7.9 1.0
OG1 A:THR29 2.5 12.8 1.0
OD1 A:ASP27 2.5 16.7 1.0
O A:THR29 2.5 9.2 1.0
C A:LYS24 3.4 8.2 1.0
C A:THR29 3.5 12.5 1.0
C A:SER36 3.5 7.6 1.0
C A:ASN144 3.5 4.9 1.0
CG A:ASP27 3.5 16.8 1.0
CD A:GLU145 3.5 9.6 1.0
CB A:THR29 3.6 11.7 1.0
N A:THR29 3.8 11.3 1.0
CA A:THR29 3.8 10.4 1.0
OD2 A:ASP27 3.9 16.8 1.0
CB A:GLU145 3.9 7.5 1.0
CA A:SER36 4.1 10.4 1.0
CA A:GLU145 4.1 7.6 1.0
CA A:LYS24 4.2 8.8 1.0
CB A:SER36 4.2 11.4 1.0
N A:GLU145 4.3 5.7 1.0
CG A:GLU145 4.4 8.3 1.0
OE1 A:GLU145 4.4 10.3 1.0
CB A:LYS24 4.5 8.6 1.0
N A:LEU25 4.5 7.3 1.0
CA A:ASN144 4.6 5.5 1.0
N A:ARG37 4.6 7.0 1.0
N A:ASP27 4.6 13.6 1.0
CA A:LEU25 4.7 7.7 1.0
C A:LEU25 4.7 9.3 1.0
N A:THR30 4.7 10.5 1.0
CB A:ASP27 4.8 14.9 1.0
CG2 A:THR29 4.8 17.2 1.0
N A:GLY28 4.8 16.5 1.0
CA A:ARG37 4.9 7.5 1.0
O A:LEU25 4.9 9.0 1.0
N A:ILE26 5.0 7.6 1.0

Calcium binding site 2 out of 2 in 4uap

Go back to Calcium Binding Sites List in 4uap
Calcium binding site 2 out of 2 in the X-Ray Structure of GH31 CBM32-2 Bound to Galnac


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of X-Ray Structure of GH31 CBM32-2 Bound to Galnac within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca202

b:9.4
occ:1.00
OE2 B:GLU145 2.3 12.2 1.0
O B:ASN144 2.4 10.0 1.0
O B:LYS24 2.4 9.9 1.0
O B:SER36 2.4 10.1 1.0
O B:THR29 2.4 10.3 1.0
OD1 B:ASP27 2.5 18.6 1.0
OG1 B:THR29 2.5 13.5 1.0
C B:THR29 3.4 14.2 1.0
C B:SER36 3.5 12.3 1.0
C B:LYS24 3.5 10.9 1.0
CG B:ASP27 3.5 17.6 1.0
CD B:GLU145 3.5 13.9 1.0
C B:ASN144 3.6 8.3 1.0
CB B:THR29 3.6 15.9 1.0
N B:THR29 3.7 16.6 1.0
CA B:THR29 3.7 13.1 1.0
OD2 B:ASP27 3.9 19.1 1.0
CB B:GLU145 3.9 9.4 1.0
CA B:SER36 4.1 11.8 1.0
CA B:GLU145 4.2 10.2 1.0
CA B:LYS24 4.2 10.6 1.0
CB B:SER36 4.2 13.8 1.0
N B:GLU145 4.3 7.0 1.0
CG B:GLU145 4.3 12.1 1.0
OE1 B:GLU145 4.4 15.7 1.0
CB B:LYS24 4.5 9.4 1.0
N B:LEU25 4.5 8.0 1.0
N B:THR30 4.6 11.1 1.0
N B:ARG37 4.6 10.0 1.0
CA B:ASN144 4.6 8.5 1.0
N B:ASP27 4.6 14.1 1.0
C B:LEU25 4.7 12.8 1.0
CA B:LEU25 4.7 8.1 1.0
N B:GLY28 4.8 15.4 1.0
CB B:ASP27 4.8 14.2 1.0
CG2 B:THR29 4.8 17.6 1.0
O B:LEU25 4.9 9.5 1.0
CA B:ARG37 4.9 8.8 1.0
N B:ILE26 5.0 9.0 1.0
C B:GLY28 5.0 19.3 1.0

Reference:

J.M.Grondin, D.Duan, A.C.Kirlin, K.T.Abe, S.Chitayat, H.L.Spencer, C.Spencer, A.Campigotto, S.Houliston, C.H.Arrowsmith, J.S.Allingham, A.B.Boraston, S.P.Smith. Diverse Modes of Galacto-Specific Carbohydrate Recognition By A Family 31 Glycoside Hydrolase From Clostridium Perfringens. Plos One V. 12 71606 2017.
ISSN: ESSN 1932-6203
PubMed: 28158290
DOI: 10.1371/JOURNAL.PONE.0171606
Page generated: Sun Jul 14 13:38:31 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy