Calcium in PDB 4uj7: Structure of the S-Layer Protein Sbsc, Domains 5-6

The structure of Structure of the S-Layer Protein Sbsc, Domains 5-6, PDB code: 4uj7 was solved by A.Dordic, T.Pavkov-Keller, M.Eder, E.M.Egelseer, K.Davis, D.Mills, U.B.Sleytr, W.Kuehlbrandt, J.Vonck, W.Keller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.28 / 1.54
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.096, 43.753, 49.715, 90.00, 103.78, 90.00
R / Rfree (%)	18.982 / 21.665

The binding sites of Calcium atom in the Structure of the S-Layer Protein Sbsc, Domains 5-6 (pdb code 4uj7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of the S-Layer Protein Sbsc, Domains 5-6, PDB code: 4uj7:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Structure of the S-Layer Protein Sbsc, Domains 5-6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the S-Layer Protein Sbsc, Domains 5-6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca800 b:17.6 occ:1.00 OD1 A:ASN674 2.4 16.0 1.0 O A:ASP664 2.4 16.1 1.0 OE1 A:GLU669 2.4 19.7 1.0 O A:SER666 2.4 21.0 1.0 O A:HOH2151 2.4 17.5 1.0 O A:HOH2154 2.4 20.2 1.0 OE2 A:GLU669 2.5 18.8 1.0 CD A:GLU669 2.8 20.8 1.0 CG A:ASN674 3.4 15.9 1.0 C A:ASP664 3.6 16.8 1.0 C A:SER666 3.6 21.3 1.0 ND2 A:ASN674 3.7 18.2 1.0 N A:SER666 4.0 20.1 1.0 OG A:SER666 4.1 24.3 0.5 O A:HOH2150 4.2 18.0 1.0 C A:LYS665 4.2 19.2 1.0 CG A:GLU669 4.3 21.2 1.0 CA A:SER666 4.3 19.8 0.5 CA A:SER666 4.4 21.0 0.5 CB A:ASP664 4.4 17.3 1.0 CA A:LYS665 4.4 18.3 1.0 O A:HOH2156 4.4 27.0 1.0 N A:LYS665 4.4 16.7 1.0 CA A:ASP664 4.5 16.1 1.0 N A:ALA667 4.6 21.4 1.0 O A:HOH2153 4.7 22.2 1.0 CB A:SER666 4.7 19.6 0.5 CB A:ASN674 4.8 15.8 1.0 O A:ASN673 4.8 16.5 1.0 CA A:ALA667 4.8 22.6 1.0 CG A:ASP664 4.8 18.0 1.0 O A:LYS665 4.8 20.0 1.0 C A:ALA667 4.8 23.7 1.0 CB A:SER666 4.9 22.6 0.5 OD1 A:ASP664 4.9 18.8 1.0 N A:ASN673 4.9 18.1 1.0 N A:GLU669 5.0 25.0 1.0 C A:ASN673 5.0 15.7 1.0

Calcium binding site 2 out of 3 in the Structure of the S-Layer Protein Sbsc, Domains 5-6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the S-Layer Protein Sbsc, Domains 5-6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:15.1 occ:1.00 OD1 A:ASN673 2.3 17.1 1.0 OD2 A:ASP659 2.4 18.4 1.0 O A:ASP675 2.4 15.7 1.0 O A:LYS662 2.4 15.1 0.5 O A:LYS662 2.4 15.1 0.5 OD1 A:ASP660 2.5 18.0 1.0 O A:HOH2143 2.5 17.9 1.0 O A:HOH2168 2.6 20.1 1.0 CG A:ASN673 3.5 17.2 1.0 CG A:ASP660 3.5 19.0 1.0 CG A:ASP659 3.5 17.3 1.0 C A:LYS662 3.6 15.0 0.5 C A:LYS662 3.6 15.1 0.5 C A:ASP675 3.6 15.3 1.0 OD2 A:ASP660 4.0 18.8 1.0 N A:LYS662 4.0 15.8 0.5 N A:LYS662 4.0 15.9 0.5 ND2 A:ASN673 4.0 17.2 1.0 CB A:ASP659 4.1 17.5 1.0 CA A:LYS662 4.3 16.0 0.5 N A:ASP660 4.3 17.8 1.0 N A:ASP675 4.3 14.8 1.0 OD1 A:ASP675 4.3 19.5 1.0 CA A:LYS662 4.3 16.2 0.5 N A:VAL676 4.5 14.4 1.0 OD1 A:ASP659 4.6 17.7 1.0 N A:GLY661 4.6 16.6 1.0 CA A:ASP675 4.6 15.6 1.0 C A:ASN673 4.6 15.7 1.0 CA A:VAL676 4.6 14.8 1.0 O A:ASN673 4.6 16.5 1.0 N A:ILE663 4.7 15.2 1.0 CB A:ASP660 4.7 18.2 1.0 CB A:ASN673 4.7 16.8 1.0 O A:HOH2174 4.7 29.7 1.0 CG2 A:VAL676 4.7 16.5 1.0 CA A:ASN673 4.7 17.3 1.0 CB A:LYS662 4.8 16.8 0.5 O A:HOH2166 4.8 35.2 1.0 CA A:ASP660 4.9 17.7 1.0 CB A:LYS662 4.9 17.2 0.5 CA A:ILE663 5.0 14.8 1.0 N A:ASN674 5.0 16.4 1.0

Calcium binding site 3 out of 3 in the Structure of the S-Layer Protein Sbsc, Domains 5-6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the S-Layer Protein Sbsc, Domains 5-6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca802 b:13.7 occ:1.00 O A:VAL709 2.3 14.7 1.0 OE2 A:GLU702 2.3 13.9 1.0 OD1 A:ASN707 2.4 15.4 1.0 OD1 A:ASP705 2.4 14.9 1.0 O A:HOH2200 2.4 14.9 1.0 OE2 A:GLU737 2.5 15.9 1.0 OE1 A:GLU737 2.6 16.7 1.0 CD A:GLU737 2.9 16.3 1.0 CD A:GLU702 3.3 14.2 1.0 C A:VAL709 3.5 14.6 1.0 CG A:ASN707 3.5 15.4 1.0 CG A:ASP705 3.5 15.3 1.0 CG A:GLU702 3.8 15.0 1.0 ND2 A:ASN707 4.0 16.1 1.0 N A:VAL709 4.1 15.5 1.0 CA A:ASP705 4.1 14.0 1.0 CB A:ASP705 4.1 14.3 1.0 O A:HOH2195 4.2 16.2 1.0 N A:THR706 4.2 14.5 1.0 CA A:VAL709 4.2 14.9 1.0 CG A:GLU737 4.3 16.4 1.0 N A:ASN707 4.3 14.5 1.0 O A:HOH2199 4.4 23.5 1.0 OE1 A:GLU702 4.4 14.9 1.0 CB A:VAL709 4.5 15.1 1.0 N A:ILE710 4.5 14.1 1.0 OD2 A:ASP705 4.5 16.5 1.0 CA A:ILE710 4.6 14.2 1.0 CB A:ASN707 4.7 15.0 1.0 C A:ASP705 4.7 15.2 1.0 CG1 A:ILE710 4.7 15.8 1.0 N A:GLY708 4.7 14.9 1.0 O A:HOH2196 4.8 23.2 1.0 CA A:ASN707 4.9 15.0 1.0 O A:HOH2245 4.9 25.9 1.0 C A:ASN707 5.0 14.9 1.0

T.Pavkov-Keller, A.Dordic, M.Eder, E.M.Egelseer, K.Davis, D.Mills, U.B.Sleytr, W.Kuehlbrandt, J.Vonck, W.Keller. Structure of the S-Layer Protein Sbsc, Domains 5-6 To Be Published.