Calcium in PDB 4uj8: Structure of Surface Layer Protein Sbsc, Domains 6-7

The structure of Structure of Surface Layer Protein Sbsc, Domains 6-7, PDB code: 4uj8 was solved by A.Dordic, T.Pavkov-Keller, M.Eder, E.M.Egelseer, K.Davis, D.Mills, U.B.Sleytr, W.Kuehlbrandt, J.Vonck, W.Keller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.001 / 1.70
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	50.887, 54.459, 92.243, 103.59, 105.23, 91.42
R / Rfree (%)	19.42 / 23.16

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Calcium atom in the Structure of Surface Layer Protein Sbsc, Domains 6-7 (pdb code 4uj8). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the Structure of Surface Layer Protein Sbsc, Domains 6-7, PDB code: 4uj8:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 16 in the Structure of Surface Layer Protein Sbsc, Domains 6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Surface Layer Protein Sbsc, Domains 6-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2000 b:15.2 occ:1.00 OD1 A:ASN673 2.3 12.7 1.0 OD2 A:ASP659 2.3 15.3 1.0 OD1 A:ASP660 2.4 11.2 1.0 O A:ASP675 2.4 10.2 1.0 O A:LYS662 2.4 9.7 1.0 O A:HOH3052 2.5 16.4 1.0 O A:HOH3053 2.5 18.5 1.0 CG A:ASP660 3.4 19.0 1.0 CG A:ASP659 3.5 16.7 1.0 CG A:ASN673 3.5 13.0 1.0 C A:LYS662 3.6 9.1 1.0 C A:ASP675 3.6 9.9 1.0 OD2 A:ASP660 3.9 15.4 1.0 N A:LYS662 3.9 13.1 1.0 CB A:ASP659 4.0 15.9 1.0 ND2 A:ASN673 4.1 13.9 1.0 N A:ASP660 4.2 15.2 1.0 CA A:LYS662 4.3 12.0 1.0 N A:ASP675 4.4 10.4 1.0 OD1 A:ASP675 4.4 13.7 1.0 O A:HOH3055 4.4 31.6 1.0 N A:GLY661 4.4 12.3 1.0 OD1 A:ASP659 4.5 11.1 1.0 N A:VAL676 4.5 9.0 1.0 C A:ASN673 4.6 12.9 1.0 CB A:ASP660 4.6 15.1 1.0 CA A:VAL676 4.6 12.1 1.0 CA A:ASP675 4.6 9.2 1.0 O A:HOH3088 4.6 27.0 1.0 O A:ASN673 4.7 11.0 1.0 N A:ILE663 4.7 9.3 1.0 CG2 A:VAL676 4.7 10.8 1.0 CB A:ASN673 4.7 9.7 1.0 CA A:ASN673 4.7 11.6 1.0 CA A:ASP660 4.8 16.8 1.0 C A:ASP660 4.9 19.4 1.0 O A:HOH3090 4.9 26.0 1.0 C A:GLY661 4.9 14.3 1.0 CB A:LYS662 4.9 15.4 1.0 CA A:ILE663 5.0 8.4 1.0 N A:ASN674 5.0 9.8 1.0

Calcium binding site 2 out of 16 in the Structure of Surface Layer Protein Sbsc, Domains 6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Surface Layer Protein Sbsc, Domains 6-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2001 b:15.1 occ:1.00 OD1 A:ASN674 2.3 9.4 1.0 O A:HOH3073 2.4 11.7 1.0 O A:SER666 2.4 13.8 1.0 OE2 A:GLU669 2.4 12.5 1.0 O A:HOH3066 2.4 11.9 1.0 O A:ASP664 2.4 10.6 1.0 OE1 A:GLU669 2.5 13.3 1.0 CD A:GLU669 2.8 13.6 1.0 CG A:ASN674 3.3 12.2 1.0 C A:SER666 3.5 16.1 1.0 C A:ASP664 3.6 13.2 1.0 ND2 A:ASN674 3.7 17.5 1.0 N A:SER666 4.0 14.3 1.0 O A:HOH3068 4.0 15.8 1.0 C A:LYS665 4.2 16.0 1.0 CG A:GLU669 4.3 12.6 1.0 CA A:SER666 4.3 19.1 1.0 CA A:LYS665 4.3 13.4 1.0 N A:LYS665 4.4 12.1 1.0 O A:HOH3069 4.4 25.3 1.0 N A:ALA667 4.5 18.9 1.0 CB A:ASP664 4.5 11.5 1.0 CA A:ASP664 4.6 8.1 1.0 O A:HOH3003 4.6 21.6 1.0 CB A:ASN674 4.6 15.9 1.0 O A:HOH3080 4.6 17.3 1.0 CA A:ALA667 4.6 21.1 1.0 O A:ASN673 4.7 11.0 1.0 CB A:SER666 4.8 16.9 1.0 O A:LYS665 4.8 15.8 1.0 C A:ALA667 4.8 21.0 1.0 C A:ASN673 4.9 12.9 1.0 N A:ASN673 4.9 10.5 1.0 CG A:ASP664 4.9 9.1 1.0 OD1 A:ASP664 4.9 12.8 1.0 CA A:ASN674 5.0 9.2 1.0 N A:GLU669 5.0 21.4 1.0

Calcium binding site 3 out of 16 in the Structure of Surface Layer Protein Sbsc, Domains 6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Surface Layer Protein Sbsc, Domains 6-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2002 b:27.9 occ:1.00 OE2 A:GLU702 2.3 26.2 1.0 O A:VAL709 2.4 16.9 1.0 OD1 A:ASP705 2.4 24.4 1.0 O A:HOH3159 2.4 30.4 1.0 OD1 A:ASN707 2.4 20.3 1.0 OE2 A:GLU737 2.6 19.5 1.0 OE1 A:GLU737 2.7 20.1 1.0 CD A:GLU737 3.0 19.1 1.0 CD A:GLU702 3.3 28.3 1.0 CG A:ASN707 3.5 21.6 1.0 C A:VAL709 3.5 17.7 1.0 CG A:ASP705 3.6 27.3 1.0 CG A:GLU702 3.7 27.1 1.0 N A:THR706 4.0 26.4 1.0 CA A:ASP705 4.0 29.6 1.0 ND2 A:ASN707 4.1 19.2 1.0 N A:VAL709 4.1 15.6 1.0 O A:HOH3157 4.2 16.4 1.0 CB A:ASP705 4.2 28.3 1.0 CA A:VAL709 4.3 16.3 1.0 N A:ASN707 4.3 26.6 1.0 OE1 A:GLU702 4.4 32.1 1.0 CG A:GLU737 4.4 17.3 1.0 N A:ILE710 4.5 16.5 1.0 CB A:VAL709 4.6 14.9 1.0 C A:ASP705 4.6 34.6 1.0 OD2 A:ASP705 4.6 28.0 1.0 CA A:ILE710 4.6 12.7 1.0 CG1 A:ILE710 4.7 21.1 1.0 CB A:ASN707 4.7 22.3 1.0 N A:GLY708 4.8 19.1 1.0 O A:HOH3218 4.9 27.9 1.0 CA A:ASN707 4.9 24.5 1.0

Calcium binding site 4 out of 16 in the Structure of Surface Layer Protein Sbsc, Domains 6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Surface Layer Protein Sbsc, Domains 6-7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2003 b:26.2 occ:1.00 O A:SER803 2.4 27.4 1.0 O A:THR809 2.4 27.3 1.0 OD1 A:ASP802 2.4 16.0 1.0 O A:THR806 2.4 33.2 1.0 O A:HOH3286 2.4 23.9 1.0 OG1 A:THR806 2.5 28.6 1.0 OE1 A:GLU811 2.9 31.0 1.0 CG A:ASP802 3.4 25.5 1.0 C A:THR806 3.4 35.8 1.0 C A:SER803 3.5 24.4 1.0 CB A:THR806 3.5 36.0 1.0 C A:THR809 3.6 26.2 1.0 N A:SER803 3.7 21.4 1.0 OD2 A:ASP802 3.8 24.6 1.0 CA A:THR806 3.8 29.3 1.0 CD A:GLU811 3.8 33.6 1.0 N A:THR806 4.0 32.7 1.0 OE2 A:GLU811 4.1 28.0 1.0 CA A:SER803 4.1 25.1 1.0 CA A:ASN810 4.3 17.8 1.0 N A:ASN810 4.4 24.5 1.0 OG1 A:THR809 4.4 37.1 1.0 CB A:SER803 4.5 30.6 1.0 N A:GLU811 4.5 19.2 1.0 C A:ASP802 4.6 20.4 1.0 N A:THR809 4.6 32.1 1.0 N A:ALA804 4.6 26.0 1.0 N A:PRO807 4.6 37.0 1.0 CA A:THR809 4.6 31.1 1.0 CB A:ASP802 4.7 17.8 1.0 CA A:ASP802 4.8 20.3 1.0 CA A:ALA804 4.8 30.1 1.0 CG2 A:THR806 4.8 33.6 1.0 C A:ASN810 4.9 24.9 1.0

Calcium binding site 5 out of 16 in the Structure of Surface Layer Protein Sbsc, Domains 6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Surface Layer Protein Sbsc, Domains 6-7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2000 b:20.6 occ:1.00 O B:THR806 2.3 25.7 1.0 OG1 B:THR806 2.3 25.2 1.0 O B:THR809 2.4 21.5 1.0 OD1 B:ASP802 2.4 15.1 1.0 O B:SER803 2.5 21.7 1.0 OE1 B:GLU811 2.6 16.9 1.0 O B:HOH3316 2.6 30.7 1.0 C B:THR806 3.3 30.6 1.0 CG B:ASP802 3.4 15.5 1.0 CB B:THR806 3.4 30.5 1.0 C B:SER803 3.5 22.3 1.0 C B:THR809 3.6 19.5 1.0 CD B:GLU811 3.6 21.6 1.0 CA B:THR806 3.7 24.5 1.0 N B:SER803 3.7 13.9 1.0 OD2 B:ASP802 3.8 25.6 1.0 OE2 B:GLU811 3.9 23.2 1.0 N B:THR806 3.9 29.6 1.0 CA B:SER803 4.1 15.8 1.0 CA B:ASN810 4.3 15.1 1.0 N B:ASN810 4.4 14.0 1.0 N B:GLU811 4.4 11.7 1.0 CB B:SER803 4.4 21.2 1.0 N B:PRO807 4.5 30.7 1.0 O B:HOH3136 4.5 33.3 1.0 O B:HOH3321 4.5 27.8 1.0 C B:ASP802 4.5 12.6 1.0 N B:THR809 4.6 30.1 1.0 N B:ALA804 4.6 19.7 1.0 CA B:THR809 4.6 23.8 1.0 CB B:ASP802 4.7 12.6 1.0 CG2 B:THR806 4.7 28.0 1.0 CG2 B:THR809 4.7 28.3 1.0 CA B:ASP802 4.8 13.5 1.0 C B:ASN810 4.9 13.5 1.0 CA B:ALA804 4.9 24.8 1.0 CA B:PRO807 4.9 34.8 1.0 CG B:GLU811 5.0 14.9 1.0

Calcium binding site 6 out of 16 in the Structure of Surface Layer Protein Sbsc, Domains 6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Surface Layer Protein Sbsc, Domains 6-7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2001 b:16.1 occ:1.00 O B:VAL709 2.3 14.7 1.0 OE2 B:GLU702 2.3 19.7 1.0 OD1 B:ASN707 2.4 16.7 1.0 OD1 B:ASP705 2.4 20.9 1.0 O B:HOH3167 2.4 17.4 1.0 OE2 B:GLU737 2.5 17.2 1.0 OE1 B:GLU737 2.5 14.1 1.0 CD B:GLU737 2.8 13.3 1.0 CD B:GLU702 3.3 23.3 1.0 CG B:ASN707 3.4 17.6 1.0 C B:VAL709 3.4 11.9 1.0 CG B:ASP705 3.6 27.9 1.0 CG B:GLU702 3.8 21.0 1.0 ND2 B:ASN707 3.8 16.4 1.0 N B:VAL709 4.0 13.6 1.0 CA B:ASP705 4.1 30.7 1.0 CA B:VAL709 4.2 11.4 1.0 CB B:ASP705 4.2 24.3 1.0 N B:THR706 4.2 20.6 1.0 O B:HOH3159 4.3 15.7 1.0 CG B:GLU737 4.3 15.1 1.0 N B:ASN707 4.4 19.1 1.0 CB B:VAL709 4.4 12.4 1.0 OE1 B:GLU702 4.4 28.9 1.0 N B:ILE710 4.5 13.4 1.0 OD2 B:ASP705 4.5 24.9 1.0 CA B:ILE710 4.7 11.4 1.0 CB B:ASN707 4.7 22.2 1.0 CG1 B:ILE710 4.7 18.5 1.0 C B:ASP705 4.7 29.1 1.0 O B:HOH3225 4.8 21.3 1.0 N B:GLY708 4.8 15.0 1.0 CA B:ASN707 4.9 19.2 1.0

Calcium binding site 7 out of 16 in the Structure of Surface Layer Protein Sbsc, Domains 6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Surface Layer Protein Sbsc, Domains 6-7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2002 b:12.7 occ:1.00 OD1 B:ASN674 2.3 9.7 1.0 O B:SER666 2.3 11.6 1.0 O B:HOH3061 2.4 17.2 1.0 O B:ASP664 2.4 10.6 1.0 OE2 B:GLU669 2.4 11.4 1.0 O B:HOH3066 2.4 12.2 1.0 OE1 B:GLU669 2.6 10.5 1.0 CD B:GLU669 2.8 12.7 1.0 CG B:ASN674 3.3 12.7 1.0 C B:SER666 3.5 10.9 1.0 C B:ASP664 3.6 10.0 1.0 ND2 B:ASN674 3.7 14.3 1.0 N B:SER666 4.0 9.9 1.0 O B:HOH3062 4.1 14.6 1.0 C B:LYS665 4.2 13.7 1.0 CA B:SER666 4.3 14.8 1.0 CG B:GLU669 4.3 11.5 1.0 CA B:LYS665 4.4 12.7 1.0 CB B:ASP664 4.4 9.8 1.0 N B:LYS665 4.4 8.5 1.0 N B:ALA667 4.5 17.1 1.0 O B:HOH3072 4.5 14.1 1.0 CA B:ASP664 4.5 10.0 1.0 CA B:ALA667 4.6 15.2 1.0 O B:HOH3070 4.6 22.7 1.0 CB B:ASN674 4.6 12.1 1.0 O B:ASN673 4.7 10.8 1.0 O B:LYS665 4.7 12.5 1.0 CB B:SER666 4.8 14.1 1.0 O A:HOH3030 4.8 24.8 1.0 C B:ALA667 4.8 14.9 1.0 N B:ASN673 4.9 8.6 1.0 CG B:ASP664 4.9 12.1 1.0 C B:ASN673 4.9 11.9 1.0 CA B:ASN674 5.0 10.2 1.0 N B:THR668 5.0 15.5 1.0 OD1 B:ASP664 5.0 10.3 1.0

Calcium binding site 8 out of 16 in the Structure of Surface Layer Protein Sbsc, Domains 6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Surface Layer Protein Sbsc, Domains 6-7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2003 b:14.0 occ:1.00 OD2 B:ASP659 2.3 9.8 1.0 OD1 B:ASN673 2.3 10.3 1.0 OD1 B:ASP660 2.4 12.1 1.0 O B:LYS662 2.5 8.7 1.0 O B:ASP675 2.5 9.0 1.0 O B:HOH3050 2.5 15.5 1.0 O B:HOH3082 2.5 14.4 1.0 CG B:ASP659 3.4 12.4 1.0 CG B:ASP660 3.5 14.9 1.0 CG B:ASN673 3.5 11.8 1.0 C B:LYS662 3.6 7.2 1.0 C B:ASP675 3.7 10.7 1.0 N B:LYS662 3.9 10.5 1.0 CB B:ASP659 3.9 11.8 1.0 OD2 B:ASP660 4.0 12.4 1.0 ND2 B:ASN673 4.1 13.0 1.0 N B:ASP660 4.1 11.1 1.0 CA B:LYS662 4.3 8.8 1.0 OD1 B:ASP675 4.3 14.1 1.0 O B:HOH3426 4.4 30.3 1.0 N B:ASP675 4.4 8.7 1.0 N B:GLY661 4.5 10.7 1.0 OD1 B:ASP659 4.5 11.7 1.0 N B:VAL676 4.5 8.6 1.0 CA B:VAL676 4.6 8.8 1.0 C B:ASN673 4.6 11.9 1.0 CB B:ASP660 4.6 15.3 1.0 O B:ASN673 4.7 10.8 1.0 CA B:ASP675 4.7 10.5 1.0 CB B:ASN673 4.7 10.9 1.0 CA B:ASN673 4.7 12.1 1.0 N B:ILE663 4.7 6.9 1.0 O B:HOH3053 4.8 30.2 1.0 CA B:ASP660 4.8 13.9 1.0 CG2 B:VAL676 4.8 8.8 1.0 CB B:LYS662 4.8 11.0 1.0 C B:ASP660 4.9 13.8 1.0 C B:GLY661 5.0 11.2 1.0

Calcium binding site 9 out of 16 in the Structure of Surface Layer Protein Sbsc, Domains 6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of Surface Layer Protein Sbsc, Domains 6-7 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca2000 b:22.9 occ:1.00 O C:VAL709 2.3 17.4 1.0 OE2 C:GLU702 2.3 22.0 1.0 OE2 C:GLU737 2.4 17.9 1.0 O C:HOH3116 2.4 20.8 1.0 OD1 C:ASP705 2.4 19.2 1.0 OD1 C:ASN707 2.5 21.2 1.0 OE1 C:GLU737 2.6 19.1 1.0 CD C:GLU737 2.8 17.2 1.0 CD C:GLU702 3.3 24.0 1.0 C C:VAL709 3.5 18.7 1.0 CG C:ASN707 3.5 20.9 1.0 CG C:ASP705 3.6 23.6 1.0 CG C:GLU702 3.7 23.9 1.0 ND2 C:ASN707 4.0 21.4 1.0 N C:VAL709 4.0 16.6 1.0 CB C:ASP705 4.1 22.0 1.0 CA C:ASP705 4.1 25.4 1.0 CA C:VAL709 4.2 16.0 1.0 O C:HOH3113 4.2 21.0 1.0 N C:THR706 4.2 25.9 1.0 CG C:GLU737 4.3 18.8 1.0 N C:ASN707 4.3 21.4 1.0 CB C:VAL709 4.4 14.7 1.0 OE1 C:GLU702 4.4 26.2 1.0 N C:ILE710 4.5 14.3 1.0 OD2 C:ASP705 4.6 18.8 1.0 CA C:ILE710 4.7 14.1 1.0 CB C:ASN707 4.7 20.8 1.0 O C:HOH3165 4.7 28.0 1.0 N C:GLY708 4.7 22.0 1.0 CG1 C:ILE710 4.7 21.8 1.0 C C:ASP705 4.7 28.4 1.0 CA C:ASN707 4.9 20.8 1.0 C C:ASN707 4.9 19.9 1.0

Calcium binding site 10 out of 16 in the Structure of Surface Layer Protein Sbsc, Domains 6-7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of Surface Layer Protein Sbsc, Domains 6-7 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca2001 b:24.1 occ:1.00 O C:THR806 2.2 31.5 1.0 O C:THR809 2.3 31.4 1.0 OD1 C:ASP802 2.3 23.3 1.0 O C:SER803 2.4 19.8 1.0 OG1 C:THR806 2.4 28.1 1.0 OE1 C:GLU811 2.6 26.6 1.0 C C:THR806 3.3 33.2 1.0 CB C:THR806 3.4 31.6 1.0 CG C:ASP802 3.4 28.2 1.0 CD C:GLU811 3.5 28.0 1.0 C C:SER803 3.5 19.6 1.0 C C:THR809 3.5 36.7 1.0 OE2 C:GLU811 3.6 28.0 1.0 N C:SER803 3.7 18.3 1.0 CA C:THR806 3.7 28.0 1.0 OD2 C:ASP802 3.9 27.4 1.0 N C:THR806 4.0 25.3 1.0 CA C:SER803 4.0 21.0 1.0 CA C:ASN810 4.2 23.6 1.0 N C:ASN810 4.3 29.9 1.0 N C:THR809 4.3 36.8 1.0 N C:GLU811 4.4 14.8 1.0 CB C:SER803 4.4 26.3 1.0 N C:PRO807 4.4 32.4 1.0 OG1 C:THR809 4.5 38.3 1.0 CA C:THR809 4.5 35.7 1.0 C C:ASP802 4.5 23.8 1.0 N C:ALA804 4.6 19.4 1.0 CB C:ASP802 4.7 23.6 1.0 CA C:ASP802 4.7 18.9 1.0 CG2 C:THR806 4.7 26.9 1.0 CA C:PRO807 4.8 32.9 1.0 C C:ASN810 4.8 22.8 1.0 N C:ASN808 4.9 36.4 1.0 OG C:SER803 4.9 26.8 1.0 CG C:GLU811 4.9 26.5 1.0 CA C:ALA804 4.9 18.2 1.0 C C:PRO807 5.0 34.8 1.0

T.Pavkov-Keller, A.Dordic, M.Eder, E.M.Egelseer, K.Davis, D.Mills, U.B.Sleytr, W.Kuehlbrandt, J.Vonck, W.Keller. Structure of Surface Layer Protein Sbsc To Be Published.