Atomistry » Calcium » PDB 4uj7-4w9y » 4ux8
Atomistry »
  Calcium »
    PDB 4uj7-4w9y »
      4ux8 »

Calcium in PDB 4ux8: Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association

Enzymatic activity of Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association

All present enzymatic activity of Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association:
2.7.10.1;

Calcium Binding Sites:

The binding sites of Calcium atom in the Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association (pdb code 4ux8). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association, PDB code: 4ux8:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 4ux8

Go back to Calcium Binding Sites List in 4ux8
Calcium binding site 1 out of 6 in the Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1603

b:10.5
occ:1.00
 O A:GLU265 2.3 30.5 1.0
OD1 A:ASP267 2.5 10.1 1.0
OE2 A:GLU178 2.6 40.2 1.0
OD2 A:ASP264 2.7 47.1 1.0
OD1 A:ASP264 2.9 47.1 1.0
CG A:ASP264 3.0 47.1 1.0
C A:GLU265 3.5 30.5 1.0
N A:GLU265 3.6 30.5 1.0
OD1 A:ASP302 3.6 93.3 1.0
CG A:ASP267 3.7 10.1 1.0
CD A:GLU178 3.8 39.3 1.0
CA A:GLU265 4.1 30.5 1.0
N A:ASP267 4.2 48.2 1.0
CG A:ASP302 4.2 93.3 1.0
CB A:ASP267 4.4 10.1 1.0
CB A:ASP264 4.4 47.1 1.0
CB A:ASP302 4.4 93.3 1.0
C A:ASP264 4.6 43.1 1.0
OD2 A:ASP267 4.6 10.1 1.0
N A:ASP266 4.6 34.3 1.0
OE1 A:GLU178 4.6 39.4 1.0
CA A:ASP264 4.6 43.1 1.0
CG A:GLU178 4.8 40.6 1.0
CB A:ARG231 4.8 47.0 1.0
CA A:CA1604 4.8 12.9 1.0
CB A:GLU265 4.8 20.0 1.0
CD A:ARG231 4.8 50.1 1.0
CA A:ASP302 4.8 93.3 1.0
N A:VAL303 4.8 58.3 1.0
CA A:ASP267 4.9 48.2 1.0
CA A:ASP266 4.9 34.3 1.0

Calcium binding site 2 out of 6 in 4ux8

Go back to Calcium Binding Sites List in 4ux8
Calcium binding site 2 out of 6 in the Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1604

b:12.9
occ:1.00
 OD1 A:ASP230 2.0 54.0 1.0
OD2 A:ASP267 2.4 10.1 1.0
CG A:ASP267 2.6 10.1 1.0
CB A:GLU232 2.7 50.5 1.0
CG A:ASP230 2.8 52.0 1.0
N A:GLU232 2.9 49.3 1.0
CB A:ASP267 3.1 10.1 1.0
OE1 A:GLU178 3.2 39.4 1.0
OD1 A:ASP267 3.2 10.1 1.0
OD2 A:ASP230 3.2 57.2 1.0
CA A:GLU232 3.4 49.9 1.0
N A:ARG231 3.8 45.5 1.0
CD A:GLU178 3.8 39.3 1.0
OE2 A:GLU178 3.9 40.2 1.0
C A:ASP230 4.0 45.0 1.0
CB A:ASP230 4.0 47.5 1.0
C A:ARG231 4.1 49.2 1.0
CA A:ASP230 4.2 46.8 1.0
C A:GLU232 4.4 50.2 1.0
CA A:ARG231 4.4 46.9 1.0
N A:GLN233 4.5 49.1 1.0
O A:ASP230 4.6 44.7 1.0
CA A:ASP267 4.6 48.2 1.0
CA A:CA1603 4.8 10.5 1.0
CB A:ARG231 4.9 47.0 1.0

Calcium binding site 3 out of 6 in 4ux8

Go back to Calcium Binding Sites List in 4ux8
Calcium binding site 3 out of 6 in the Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1605

b:10.5
occ:1.00
 OD2 A:ASP302 1.9 93.3 1.0
O A:SER268 2.3 65.3 1.0
NH1 A:ARG360 2.6 0.5 1.0
OD1 A:ASP266 2.6 20.0 1.0
O A:GLY308 2.8 49.4 1.0
OD2 A:ASP300 3.0 92.6 1.0
CG A:ASP302 3.0 93.3 1.0
C A:GLY308 3.2 49.4 1.0
C A:SER268 3.3 65.3 1.0
OG A:SER268 3.3 20.0 1.0
OD1 A:ASP300 3.6 92.6 1.0
CA A:GLY308 3.6 49.4 1.0
CG A:ASP300 3.6 92.6 1.0
CG A:ASP266 3.6 20.0 1.0
CZ A:ARG360 3.7 0.5 1.0
CB A:ASP302 3.8 93.3 1.0
N A:GLU309 4.0 0.8 1.0
CA A:SER268 4.0 65.3 1.0
OD1 A:ASP302 4.0 93.3 1.0
N A:SER268 4.2 65.3 1.0
OD2 A:ASP266 4.2 20.0 1.0
CB A:SER268 4.2 20.0 1.0
N A:ALA269 4.3 45.7 1.0
NH2 A:ARG360 4.3 0.5 1.0
CA A:GLU309 4.4 0.8 1.0
CA A:ASP266 4.4 34.3 1.0
CB A:ASP266 4.5 20.0 1.0
CA A:ALA269 4.6 45.7 1.0
C A:ASP266 4.7 34.3 1.0
NE A:ARG360 4.7 0.5 1.0
CD A:ARG360 4.8 0.5 1.0
O A:ASP266 4.8 34.3 1.0
CB A:ASP300 4.9 92.6 1.0
C A:ALA269 4.9 45.7 1.0
N A:GLY308 5.0 49.4 1.0

Calcium binding site 4 out of 6 in 4ux8

Go back to Calcium Binding Sites List in 4ux8
Calcium binding site 4 out of 6 in the Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1603

b:10.5
occ:1.00
 O B:GLU265 2.3 30.5 1.0
OD1 B:ASP267 2.5 10.1 1.0
OE2 B:GLU178 2.6 40.2 1.0
OD2 B:ASP264 2.7 47.1 1.0
OD1 B:ASP264 2.9 47.1 1.0
CG B:ASP264 3.0 47.1 1.0
C B:GLU265 3.5 30.5 1.0
N B:GLU265 3.6 30.5 1.0
OD1 B:ASP302 3.6 93.3 1.0
CG B:ASP267 3.7 10.1 1.0
CD B:GLU178 3.8 39.3 1.0
CA B:GLU265 4.1 30.5 1.0
N B:ASP267 4.2 48.2 1.0
CG B:ASP302 4.2 93.3 1.0
CB B:ASP267 4.4 10.1 1.0
CB B:ASP264 4.4 47.1 1.0
CB B:ASP302 4.4 93.3 1.0
C B:ASP264 4.6 43.1 1.0
OD2 B:ASP267 4.6 10.1 1.0
N B:ASP266 4.6 34.3 1.0
OE1 B:GLU178 4.6 39.4 1.0
CA B:ASP264 4.6 43.1 1.0
CG B:GLU178 4.8 40.6 1.0
CB B:ARG231 4.8 47.0 1.0
CA B:CA1604 4.8 12.9 1.0
CB B:GLU265 4.8 20.0 1.0
CD B:ARG231 4.8 50.1 1.0
CA B:ASP302 4.8 93.3 1.0
N B:VAL303 4.8 58.3 1.0
CA B:ASP267 4.9 48.2 1.0
CA B:ASP266 4.9 34.3 1.0

Calcium binding site 5 out of 6 in 4ux8

Go back to Calcium Binding Sites List in 4ux8
Calcium binding site 5 out of 6 in the Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1604

b:12.9
occ:1.00
 OD1 B:ASP230 2.0 54.0 1.0
OD2 B:ASP267 2.4 10.1 1.0
CG B:ASP267 2.6 10.1 1.0
CB B:GLU232 2.7 50.5 1.0
CG B:ASP230 2.8 52.0 1.0
N B:GLU232 2.9 49.3 1.0
CB B:ASP267 3.1 10.1 1.0
OE1 B:GLU178 3.2 39.4 1.0
OD1 B:ASP267 3.2 10.1 1.0
OD2 B:ASP230 3.2 57.2 1.0
CA B:GLU232 3.4 49.9 1.0
N B:ARG231 3.8 45.5 1.0
CD B:GLU178 3.8 39.3 1.0
OE2 B:GLU178 3.9 40.2 1.0
C B:ASP230 4.0 45.0 1.0
CB B:ASP230 4.0 47.5 1.0
C B:ARG231 4.1 49.2 1.0
CA B:ASP230 4.2 46.8 1.0
CA B:ARG231 4.4 46.9 1.0
C B:GLU232 4.4 50.2 1.0
N B:GLN233 4.5 49.1 1.0
O B:ASP230 4.6 44.7 1.0
CA B:ASP267 4.6 48.2 1.0
CA B:CA1603 4.8 10.5 1.0
CB B:ARG231 4.9 47.0 1.0

Calcium binding site 6 out of 6 in 4ux8

Go back to Calcium Binding Sites List in 4ux8
Calcium binding site 6 out of 6 in the Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1605

b:10.5
occ:1.00
 OD2 B:ASP302 1.9 93.3 1.0
O B:SER268 2.3 65.3 1.0
NH1 B:ARG360 2.6 0.5 1.0
OD1 B:ASP266 2.6 20.0 1.0
O B:GLY308 2.8 49.4 1.0
OD2 B:ASP300 3.0 92.6 1.0
CG B:ASP302 3.0 93.3 1.0
C B:GLY308 3.2 49.4 1.0
C B:SER268 3.3 65.3 1.0
OG B:SER268 3.3 20.0 1.0
OD1 B:ASP300 3.6 92.6 1.0
CA B:GLY308 3.6 49.4 1.0
CG B:ASP300 3.6 92.6 1.0
CG B:ASP266 3.6 20.0 1.0
CZ B:ARG360 3.7 0.5 1.0
CB B:ASP302 3.8 93.3 1.0
N B:GLU309 4.0 0.8 1.0
CA B:SER268 4.0 65.3 1.0
OD1 B:ASP302 4.0 93.3 1.0
N B:SER268 4.2 65.3 1.0
OD2 B:ASP266 4.2 20.0 1.0
CB B:SER268 4.2 20.0 1.0
N B:ALA269 4.3 45.7 1.0
NH2 B:ARG360 4.3 0.5 1.0
CA B:GLU309 4.4 0.8 1.0
CA B:ASP266 4.4 34.3 1.0
CB B:ASP266 4.5 20.0 1.0
CA B:ALA269 4.6 45.7 1.0
C B:ASP266 4.7 34.3 1.0
NE B:ARG360 4.7 0.5 1.0
CD B:ARG360 4.8 0.5 1.0
O B:ASP266 4.8 34.3 1.0
CB B:ASP300 4.9 92.6 1.0
C B:ALA269 4.9 45.7 1.0
N B:GLY308 5.0 49.4 1.0

Reference:

K.M.Goodman, S.Kjaer, F.Beuron, P.P.Knowles, A.Nawrotek, E.M.Burns, A.G.Purkiss, R.George, M.Santoro, E.P.Morris, N.Q.Mcdonald. Ret Recognition of Gdnf-GFRALPHA1 Ligand By A Composite Binding Site Promotes Membrane-Proximal Self-Association. Cell Rep. V. 8 1894 2014.
ISSN: ISSN 2211-1247
PubMed: 25242331
DOI: 10.1016/J.CELREP.2014.08.040
Page generated: Sun Jul 14 13:51:50 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy