Calcium in PDB 4w4q: Glucose Isomerase Structure Determined By Serial Femtosecond Crystallography at Sacla

All present enzymatic activity of Glucose Isomerase Structure Determined By Serial Femtosecond Crystallography at Sacla:
5.3.1.5;

The structure of Glucose Isomerase Structure Determined By Serial Femtosecond Crystallography at Sacla, PDB code: 4w4q was solved by E.Nango, T.Tanaka, M.Sugahara, M.Suzuki, S.Iwata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.98 / 2.00
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	94.000, 100.000, 103.000, 90.00, 90.00, 90.00
R / Rfree (%)	15.9 / 19.6

The binding sites of Calcium atom in the Glucose Isomerase Structure Determined By Serial Femtosecond Crystallography at Sacla (pdb code 4w4q). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Glucose Isomerase Structure Determined By Serial Femtosecond Crystallography at Sacla, PDB code: 4w4q:

Calcium binding site 1 out of 1 in the Glucose Isomerase Structure Determined By Serial Femtosecond Crystallography at Sacla


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Glucose Isomerase Structure Determined By Serial Femtosecond Crystallography at Sacla within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:11.9 occ:1.00 OE2 A:GLU217 2.1 16.0 1.0 O A:HOH663 2.2 21.0 1.0 OD1 A:ASP257 2.2 18.8 1.0 OD1 A:ASP255 2.3 15.6 1.0 OD2 A:ASP255 2.3 18.1 1.0 NE2 A:HIS220 2.4 14.4 1.0 CG A:ASP255 2.6 18.1 1.0 CD A:GLU217 3.0 14.7 1.0 CG A:ASP257 3.1 19.7 1.0 CD2 A:HIS220 3.2 14.1 1.0 OE1 A:GLU217 3.3 15.0 1.0 OD2 A:ASP257 3.4 19.9 1.0 CE1 A:HIS220 3.4 16.4 1.0 O A:HOH695 3.9 19.5 1.0 O A:HOH658 3.9 17.3 1.0 ND2 A:ASN247 3.9 14.6 1.0 CB A:ASP255 4.1 16.6 1.0 O A:HOH744 4.2 32.8 1.0 CG A:HIS220 4.3 14.3 1.0 CG A:GLU217 4.4 15.3 1.0 ND1 A:HIS220 4.4 13.9 1.0 CB A:ASP257 4.5 16.9 1.0 N A:ASP257 4.9 15.6 1.0 CE A:LYS183 4.9 16.5 1.0 CA A:ASP257 4.9 16.9 1.0 O A:HOH687 4.9 22.9 1.0 OD2 A:ASP287 4.9 18.0 1.0 NZ A:LYS183 5.0 18.1 1.0

M.Sugahara, E.Mizohata, E.Nango, M.Suzuki, T.Tanaka, T.Masuda, R.Tanaka, T.Shimamura, Y.Tanaka, S.Suno, K.Ihara, D.Pan, K.Kakinouchi, S.Sugiyama, M.Murata, T.Inoue, K.Tono, C.Song, J.Park, T.Kameshima, T.Hatsui, Y.Joti, M.Yabashi, S.Iwata. Grease Matrix As A Versatile Carrier of Proteins For Serial Crystallography Nat.Methods 2014.
ISSN: ESSN 1548-7105
DOI: 10.1038/NMETH.3172