Atomistry » Calcium » PDB 4wa3-4wn0 » 4wa4
Atomistry »
  Calcium »
    PDB 4wa3-4wn0 »
      4wa4 »

Calcium in PDB 4wa4: The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals in Complex with Oseltamivir Carboxylate

Protein crystallography data

The structure of The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals in Complex with Oseltamivir Carboxylate, PDB code: 4wa4 was solved by H.Yang, J.M.Villanueva, L.V.Gubareva, J.Stevens, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.98 / 1.95
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 90.666, 90.666, 108.354, 90.00, 90.00, 90.00
R / Rfree (%) 13.9 / 16.7

Calcium Binding Sites:

The binding sites of Calcium atom in the The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals in Complex with Oseltamivir Carboxylate (pdb code 4wa4). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals in Complex with Oseltamivir Carboxylate, PDB code: 4wa4:

Calcium binding site 1 out of 1 in 4wa4

Go back to Calcium Binding Sites List in 4wa4
Calcium binding site 1 out of 1 in the The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals in Complex with Oseltamivir Carboxylate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals in Complex with Oseltamivir Carboxylate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:16.7
occ:1.00
OD2 A:ASP322 2.3 16.8 1.0
O A:HOH714 2.3 16.3 1.0
O A:GLY296 2.4 19.8 1.0
O A:TYR344 2.4 14.3 1.0
O A:ASP292 2.4 14.1 1.0
O A:HOH713 2.5 18.5 1.0
CG A:ASP322 3.5 18.2 1.0
C A:TYR344 3.5 15.7 1.0
C A:ASP292 3.6 13.9 1.0
C A:GLY296 3.6 18.3 1.0
CA A:GLY345 3.8 15.2 1.0
O A:HOH743 4.1 15.9 1.0
O A:GLY343 4.1 17.2 1.0
N A:GLY345 4.1 16.1 1.0
O A:GLN342 4.2 21.2 1.0
CA A:ASN293 4.3 15.4 1.0
CB A:ASP322 4.3 17.4 1.0
C A:GLY343 4.3 20.1 1.0
N A:ASN293 4.4 14.4 1.0
OD1 A:ASP322 4.4 15.6 1.0
N A:GLY296 4.5 18.9 1.0
N A:THR297 4.5 16.6 1.0
N A:TYR344 4.6 18.6 1.0
CA A:THR297 4.6 16.8 1.0
CA A:GLY296 4.6 18.1 1.0
OD1 A:ASP292 4.6 16.1 1.0
CA A:ASP292 4.6 13.6 1.0
CA A:TYR344 4.7 19.9 1.0
C A:ASN293 4.7 15.8 1.0
CB A:ASP292 4.8 15.4 1.0
O A:PRO324 4.8 17.6 1.0
N A:ASP292 4.8 14.3 1.0
N A:TRP294 4.9 15.5 1.0

Reference:

H.Yang, H.T.Nguyen, P.J.Carney, Z.Guo, J.C.Chang, J.Jones, C.T.Davis, J.M.Villanueva, L.V.Gubareva, J.Stevens. Structural and Functional Analysis of Surface Proteins From An A(H3N8) Influenza Virus Isolated From New England Harbor Seals. J.Virol. 2014.
ISSN: ESSN 1098-5514
PubMed: 25540377
DOI: 10.1128/JVI.02723-14
Page generated: Sat Dec 12 05:10:17 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy