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Calcium in PDB 4wb2: Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin
Protein crystallography data
The structure of Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin, PDB code: 4wb2
was solved by
L.Yatime,
C.Maasch,
K.Hoehlig,
S.Klussmann,
A.Vater,
G.R.Andersen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 35.88 / 1.80 |
| Space group | P 21 21 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 46.470, 282.254, 45.899, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 16.7 / 19.3 |
Other elements in 4wb2:
The structure of Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin
(pdb code 4wb2). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin, PDB code: 4wb2:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Calcium where determined in the Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin, PDB code: 4wb2:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;
Calcium binding site 1 out of 6 in 4wb2
Go back to
Calcium Binding Sites List in 4wb2
Calcium binding site 1 out
of 6 in the Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin within 5.0Å range:
|
Calcium binding site 2 out of 6 in 4wb2
Go back to
Calcium Binding Sites List in 4wb2
Calcium binding site 2 out
of 6 in the Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin within 5.0Å range:
|
Calcium binding site 3 out of 6 in 4wb2
Go back to
Calcium Binding Sites List in 4wb2
Calcium binding site 3 out
of 6 in the Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin within 5.0Å range:
|
Calcium binding site 4 out of 6 in 4wb2
Go back to
Calcium Binding Sites List in 4wb2
Calcium binding site 4 out
of 6 in the Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin within 5.0Å range:
|
Calcium binding site 5 out of 6 in 4wb2
Go back to
Calcium Binding Sites List in 4wb2
Calcium binding site 5 out
of 6 in the Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin within 5.0Å range:
|
Calcium binding site 6 out of 6 in 4wb2
Go back to
Calcium Binding Sites List in 4wb2
Calcium binding site 6 out
of 6 in the Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of the Mirror-Image L-Rna/L-Dna Aptamer Nox-D20 in Complex with Mouse C5A Complement Anaphylatoxin within 5.0Å range:
|
Reference:
L.Yatime,
C.Maasch,
K.Hoehlig,
S.Klussmann,
G.R.Andersen,
A.Vater.
Structural Basis For the Targeting of Complement Anaphylatoxin C5A Using A Mixed L-Rna/L-Dna Aptamer. Nat Commun V. 6 6481 2015.
ISSN: ESSN 2041-1723
PubMed: 25901944
DOI: 10.1038/NCOMMS7481
Page generated: Sun Jul 14 14:03:33 2024
ISSN: ESSN 2041-1723
PubMed: 25901944
DOI: 10.1038/NCOMMS7481
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