Calcium in PDB 4wkz: Complex of Autonomous Scag Cohesin Cohg and X-Doc Domains

Protein crystallography data

The structure of Complex of Autonomous Scag Cohesin Cohg and X-Doc Domains, PDB code: 4wkz was solved by M.Voronov-Goldman, R.Lamed, E.A.Bayer, O.Yaniv, L.J.W.Shimon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 105.89 / 1.79
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 74.029, 211.781, 36.666, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 22.3

Calcium Binding Sites:

The binding sites of Calcium atom in the Complex of Autonomous Scag Cohesin Cohg and X-Doc Domains (pdb code 4wkz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Complex of Autonomous Scag Cohesin Cohg and X-Doc Domains, PDB code: 4wkz:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4wkz

Go back to Calcium Binding Sites List in 4wkz
Calcium binding site 1 out of 2 in the Complex of Autonomous Scag Cohesin Cohg and X-Doc Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Complex of Autonomous Scag Cohesin Cohg and X-Doc Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:16.9
occ:1.00
OD1 A:ASP177 2.3 17.2 1.0
OD1 A:ASP201 2.4 16.2 1.0
O A:HOH502 2.4 17.1 1.0
OD2 A:ASP181 2.4 20.4 1.0
O A:LYS179 2.5 17.3 1.0
O A:LEU196 2.5 15.5 1.0
OD2 A:ASP201 2.5 17.5 1.0
CG A:ASP201 2.8 14.8 1.0
CG A:ASP181 3.4 26.4 1.0
CG A:ASP177 3.5 21.4 1.0
C A:LYS179 3.6 19.2 1.0
OD1 A:ASP181 3.6 22.1 1.0
C A:LEU196 3.7 17.8 1.0
O A:HOH438 4.0 15.9 1.0
N A:LYS179 4.2 17.9 1.0
CA A:LYS179 4.2 18.6 1.0
CB A:LYS179 4.2 21.9 1.0
OD2 A:ASP177 4.3 19.4 1.0
CB A:ASP201 4.3 14.5 1.0
CA A:ILE197 4.4 19.3 1.0
CA A:ASP177 4.4 17.9 1.0
N A:ILE197 4.5 18.1 1.0
OD1 A:ASP198 4.5 20.9 1.0
CB A:ASP177 4.5 16.5 1.0
C A:ASP177 4.6 16.8 1.0
N A:VAL180 4.7 19.8 1.0
CA A:LEU196 4.7 16.2 1.0
N A:ASP198 4.8 15.5 1.0
CB A:ASP181 4.8 25.1 1.0
CB A:LEU196 4.8 18.3 1.0
CG A:LYS179 4.8 26.4 1.0
CA A:VAL180 4.8 23.1 1.0
CG1 A:ILE197 4.9 21.6 1.0
N A:VAL178 4.9 19.2 1.0
C A:VAL180 5.0 22.7 1.0
CG A:LEU196 5.0 20.1 1.0
N A:ASP181 5.0 22.9 1.0

Calcium binding site 2 out of 2 in 4wkz

Go back to Calcium Binding Sites List in 4wkz
Calcium binding site 2 out of 2 in the Complex of Autonomous Scag Cohesin Cohg and X-Doc Domains


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Complex of Autonomous Scag Cohesin Cohg and X-Doc Domains within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:15.1
occ:1.00
O A:ILE126 2.2 21.2 1.0
OD1 A:ASP120 2.2 13.0 1.0
O A:HOH468 2.3 14.6 1.0
OD1 A:ASN124 2.3 16.5 1.0
OD1 A:ASP122 2.4 17.7 1.0
OD2 A:ASP131 2.4 13.3 1.0
OD1 A:ASP131 2.5 15.5 1.0
CG A:ASP131 2.8 13.1 1.0
CG A:ASP122 3.3 16.7 1.0
CG A:ASN124 3.3 14.5 1.0
CG A:ASP120 3.4 13.3 1.0
C A:ILE126 3.5 20.7 1.0
OD2 A:ASP122 3.7 21.8 1.0
ND2 A:ASN124 3.8 15.7 1.0
CA A:ASP120 4.1 15.2 1.0
N A:ILE126 4.2 17.6 1.0
N A:ASN124 4.2 14.1 1.0
N A:ASP122 4.2 12.8 1.0
CB A:ASP131 4.3 13.8 1.0
CB A:ASP120 4.3 16.6 1.0
OD2 A:ASP120 4.3 16.2 1.0
CA A:ILE126 4.3 20.4 1.0
N A:VAL127 4.4 17.5 1.0
CA A:VAL127 4.4 18.6 1.0
OD1 A:ASP128 4.4 21.5 1.0
CB A:ASN124 4.5 16.2 1.0
C A:ASP120 4.5 15.8 1.0
CB A:ASP122 4.5 14.4 1.0
N A:LEU123 4.5 13.8 1.0
N A:ASP128 4.6 17.4 1.0
CB A:ILE126 4.6 24.2 1.0
CA A:ASP122 4.6 13.2 1.0
C A:ASP122 4.7 12.2 1.0
CA A:ASN124 4.7 14.9 1.0
N A:THR121 4.8 15.4 1.0
N A:ASN125 4.8 16.8 1.0
C A:ASN124 4.9 16.5 1.0
O A:ASP120 4.9 14.8 1.0
CG A:ASP128 4.9 19.8 1.0
C A:VAL127 5.0 19.1 1.0

Reference:

M.Voronov-Goldman, R.Lamed, E.A.Bayer, O.Yaniv, L.J.W.Shimon. Complex of Autonomous Scag Cohesin Cohg and X-Doc Domains To Be Published.
Page generated: Sat Dec 12 05:11:02 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy