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Calcium in PDB 4wr2: Crystal Structure of A Putative Pyrimidine-Specific Ribonucleoside Hydrolase (Riha) Protein From Shewanella Loihica Pv-4 (SHEW_0697, Target Psi-029635) with Divalent Cation and Peg 400 Bound at the Active Site

Protein crystallography data

The structure of Crystal Structure of A Putative Pyrimidine-Specific Ribonucleoside Hydrolase (Riha) Protein From Shewanella Loihica Pv-4 (SHEW_0697, Target Psi-029635) with Divalent Cation and Peg 400 Bound at the Active Site, PDB code: 4wr2 was solved by D.M.Himmel, R.Bhosle, R.Toro, B.Hillerich, A.Gizzi, S.Garforth, A.Kar, M.K.Chan, J.Lafluer, H.Patel, B.Matikainen, S.Chamala, S.Lim, A.Celikgil, G.Villegas, B.Evans, J.Love, A.Fiser, R.D.Seidel, J.B.Bonanno, S.C.Almo, New York Structural Genomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.77 / 1.70
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 60.078, 115.047, 141.640, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 17.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Pyrimidine-Specific Ribonucleoside Hydrolase (Riha) Protein From Shewanella Loihica Pv-4 (SHEW_0697, Target Psi-029635) with Divalent Cation and Peg 400 Bound at the Active Site (pdb code 4wr2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Putative Pyrimidine-Specific Ribonucleoside Hydrolase (Riha) Protein From Shewanella Loihica Pv-4 (SHEW_0697, Target Psi-029635) with Divalent Cation and Peg 400 Bound at the Active Site, PDB code: 4wr2:

Calcium binding site 1 out of 1 in 4wr2

Go back to Calcium Binding Sites List in 4wr2
Calcium binding site 1 out of 1 in the Crystal Structure of A Putative Pyrimidine-Specific Ribonucleoside Hydrolase (Riha) Protein From Shewanella Loihica Pv-4 (SHEW_0697, Target Psi-029635) with Divalent Cation and Peg 400 Bound at the Active Site


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Pyrimidine-Specific Ribonucleoside Hydrolase (Riha) Protein From Shewanella Loihica Pv-4 (SHEW_0697, Target Psi-029635) with Divalent Cation and Peg 400 Bound at the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:32.2
occ:0.77
O A:SER170 2.3 20.7 1.0
OD1 A:ASP56 2.5 40.2 1.0
OD2 A:ASP287 2.5 26.5 1.0
OD1 A:ASP61 2.6 26.2 1.0
O A:HOH598 2.6 25.1 1.0
OD2 A:ASP61 2.6 23.8 1.0
O A:HOH747 2.6 33.0 1.0
CG A:ASP61 2.9 24.3 1.0
O A:HOH678 2.9 39.9 1.0
C A:SER170 3.4 23.1 1.0
CG A:ASP287 3.5 31.4 1.0
CG A:ASP56 3.6 37.2 1.0
OD1 A:ASP287 3.7 33.5 1.0
OD2 A:ASP56 4.0 25.0 1.0
N A:GLY171 4.2 20.7 1.0
CA A:GLY171 4.2 18.5 1.0
CB A:SER170 4.2 23.3 1.0
OG A:SER170 4.3 23.9 1.0
CB A:ASP61 4.3 26.2 1.0
CA A:SER170 4.4 21.3 1.0
O A:ASP56 4.5 22.5 1.0
O A:HOH708 4.5 44.6 1.0
OD1 A:ASN212 4.6 23.6 1.0
ND2 A:ASN212 4.6 24.4 1.0
N A:ASP56 4.6 21.3 1.0
N A:ASP61 4.7 25.3 1.0
C A:ASP56 4.8 23.5 1.0
CB A:ASP56 4.9 33.5 1.0
CB A:ASP287 4.9 23.8 1.0
CA A:ASP61 4.9 25.5 1.0

Reference:

D.M.Himmel, R.Bhosle, R.Toro, B.Hillerich, A.Gizzi, S.Garforth, A.Kar, M.K.Chan, J.Lafluer, H.Patel, B.Matikainen, S.Chamala, S.Lim, A.Celikgil, G.Villegas, B.Evans, J.Love, A.Fiser, R.D.Seidel, J.B.Bonanno, S.C.Almo. Crystal Structure of A Putative Pyrimidine-Specific Ribonucleoside Hydrolase (Riha) Protein From Shewanella Loihica Pv-4 (SHEW_0697, Target Psi-029635) with Divalent Cation and Peg 400 Bound at the Active Site To Be Published.
Page generated: Sun Jul 14 14:21:20 2024

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