Calcium in PDB 4xed: Pkd Domain of M14-Like Peptidase From Thermoplasmatales Archaeon Scgc Ab-540-F20

The structure of Pkd Domain of M14-Like Peptidase From Thermoplasmatales Archaeon Scgc Ab-540-F20, PDB code: 4xed was solved by K.Michalska, G.Joachimiak, M.Endres, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.90 / 1.23
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	46.186, 48.869, 78.509, 90.00, 90.00, 90.00
R / Rfree (%)	13.8 / 16.9

The binding sites of Calcium atom in the Pkd Domain of M14-Like Peptidase From Thermoplasmatales Archaeon Scgc Ab-540-F20 (pdb code 4xed). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Pkd Domain of M14-Like Peptidase From Thermoplasmatales Archaeon Scgc Ab-540-F20, PDB code: 4xed:

Calcium binding site 1 out of 1 in the Pkd Domain of M14-Like Peptidase From Thermoplasmatales Archaeon Scgc Ab-540-F20


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Pkd Domain of M14-Like Peptidase From Thermoplasmatales Archaeon Scgc Ab-540-F20 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca101 b:8.4 occ:1.00 O A:ASP2 2.3 9.5 1.0 OD2 A:ASP33 2.3 12.0 1.0 OD2 A:ASP79 2.4 9.7 1.0 OD2 A:ASP29 2.4 8.8 1.0 OD1 A:ASN1 2.4 10.9 1.0 OD1 A:ASN31 2.5 10.1 1.0 OD1 A:ASP29 2.6 9.8 1.0 CG A:ASP29 2.9 7.5 1.0 CG A:ASN1 3.4 11.0 1.0 CG A:ASP33 3.4 12.0 1.0 CG A:ASP79 3.5 8.7 1.0 CG A:ASN31 3.5 9.7 1.0 C A:ASP2 3.5 10.1 1.0 ND2 A:ASN1 3.8 11.4 1.0 CB A:ASP79 3.8 7.3 1.0 N A:ASP2 3.9 11.5 1.0 CB A:ASN31 3.9 9.9 1.0 CB A:ASP33 4.1 10.1 1.0 O A:HOH307 4.2 31.9 1.0 CA A:ASP2 4.3 11.2 1.0 OD1 A:ASP33 4.4 14.9 1.0 O A:HOH292 4.4 13.7 1.0 CB A:ASP29 4.4 7.0 1.0 OD1 A:ASP79 4.5 8.3 1.0 N A:PRO3 4.5 9.9 1.0 N A:ASN31 4.6 9.7 1.0 CA A:PRO3 4.6 9.8 1.0 ND2 A:ASN31 4.7 13.5 1.0 CB A:ASN1 4.7 13.6 1.0 C A:PRO3 4.7 9.2 1.0 C A:ASN1 4.7 12.9 1.0 CB A:ASP2 4.8 14.3 1.0 CA A:ASN31 4.9 9.7 1.0 CD A:PRO30 4.9 9.5 1.0 CA A:ASN1 4.9 14.0 1.0 N A:PRO4 5.0 8.9 1.0

K.Michalska, G.Joachimiak, M.Endres, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg). Pkd Domain of M14-Like Peptidase From Thermoplasmatales Archaeon Scgc Ab-540-F20 To Be Published.