Calcium in PDB 4xuo: Structure of the CBM22-1 Xylan-Binding Domain From Paenibacillus Barcinonensis XYN10C

All present enzymatic activity of Structure of the CBM22-1 Xylan-Binding Domain From Paenibacillus Barcinonensis XYN10C:
3.2.1.8;

The structure of Structure of the CBM22-1 Xylan-Binding Domain From Paenibacillus Barcinonensis XYN10C, PDB code: 4xuo was solved by M.A.Sainz-Polo, J.Sanz-Aparicio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.54 / 1.70
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	85.350, 85.350, 108.460, 90.00, 90.00, 120.00
R / Rfree (%)	21.1 / 24.7

The binding sites of Calcium atom in the Structure of the CBM22-1 Xylan-Binding Domain From Paenibacillus Barcinonensis XYN10C (pdb code 4xuo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the CBM22-1 Xylan-Binding Domain From Paenibacillus Barcinonensis XYN10C, PDB code: 4xuo:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of the CBM22-1 Xylan-Binding Domain From Paenibacillus Barcinonensis XYN10C


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the CBM22-1 Xylan-Binding Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1001 b:22.2 occ:1.00 O A:HOH1112 2.3 23.7 1.0 O A:SER15 2.4 22.6 1.0 O A:GLN44 2.4 21.2 1.0 OE2 A:GLU17 2.4 25.6 1.0 O A:GLN41 2.5 23.8 1.0 OD1 A:ASP149 2.5 19.3 1.0 OD2 A:ASP149 2.6 20.5 1.0 CG A:ASP149 2.9 22.5 1.0 CD A:GLU17 3.5 27.5 1.0 C A:SER15 3.6 22.4 1.0 C A:GLN44 3.6 22.7 1.0 C A:GLN41 3.6 27.9 1.0 CG A:GLU17 4.0 26.5 1.0 N A:GLN44 4.1 25.9 1.0 CA A:SER15 4.2 23.0 1.0 N A:GLN41 4.4 26.6 1.0 CA A:GLN44 4.4 25.9 1.0 CB A:ASP149 4.4 20.5 1.0 CA A:GLN41 4.4 28.4 1.0 CB A:SER15 4.5 25.8 1.0 CB A:ALA39 4.5 26.6 1.0 N A:GLY42 4.5 28.8 1.0 CB A:GLN41 4.5 33.0 1.0 CA A:GLY42 4.6 28.3 1.0 OE1 A:GLU17 4.6 27.1 1.0 N A:SER45 4.6 21.7 1.0 N A:PHE16 4.7 22.5 1.0 OE2 A:GLU150 4.7 36.6 1.0 CA A:SER45 4.7 21.7 1.0 C A:GLY42 4.8 26.6 1.0 CB A:PHE16 4.8 21.7 1.0 N A:LYS43 4.8 27.2 1.0 C A:PHE16 5.0 24.1 1.0 N A:GLU150 5.0 21.2 1.0 N A:GLU17 5.0 26.1 1.0 CB A:GLN44 5.0 26.6 1.0

Calcium binding site 2 out of 2 in the Structure of the CBM22-1 Xylan-Binding Domain From Paenibacillus Barcinonensis XYN10C


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the CBM22-1 Xylan-Binding Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1001 b:17.6 occ:1.00 O B:GLN44 2.3 17.2 1.0 OE2 B:GLU17 2.4 19.8 1.0 O B:SER15 2.4 17.1 1.0 O B:GLN41 2.4 18.1 1.0 OD1 B:ASP149 2.5 17.4 1.0 OE2 B:GLU150 2.5 19.2 1.0 OD2 B:ASP149 2.6 16.0 1.0 CG B:ASP149 2.9 17.2 1.0 CD B:GLU17 3.2 21.2 1.0 C B:SER15 3.5 17.6 1.0 OE1 B:GLU17 3.6 21.3 1.0 C B:GLN44 3.6 19.2 1.0 C B:GLN41 3.6 18.9 1.0 CD B:GLU150 3.8 17.2 1.0 CA B:SER15 4.0 17.9 1.0 OE2 A:GLU111 4.1 20.5 1.0 CB B:SER15 4.2 19.0 1.0 CG B:GLU17 4.3 19.3 1.0 CB B:ALA39 4.3 21.1 1.0 N B:GLN44 4.4 19.9 1.0 N B:GLN41 4.4 16.4 1.0 CB B:ASP149 4.4 16.5 1.0 N B:GLY42 4.5 19.3 1.0 CG B:GLU150 4.5 16.6 1.0 N B:SER45 4.5 18.0 1.0 CA B:GLY42 4.5 20.6 1.0 CA B:GLN44 4.5 19.8 1.0 CA B:SER45 4.6 17.1 1.0 CA B:GLN41 4.6 17.2 1.0 N B:PHE16 4.7 17.2 1.0 OE1 B:GLU150 4.7 17.9 1.0 C B:GLY42 4.8 21.5 1.0 N B:GLU150 4.9 16.3 1.0 CB B:PHE16 4.9 17.0 1.0 CG B:GLN41 5.0 16.9 1.0

M.A.Sainz-Polo, B.Gonzalez, M.Menendez, F.I.Pastor, J.Sanz-Aparicio. Exploring Multimodularity in Plant Cell Wall Deconstruction: Structural and Functional Analysis of XYN10C Containing the CBM22-1-CBM22-2 Tandem. J.Biol.Chem. V. 290 17116 2015.
ISSN: ESSN 1083-351X
PubMed: 26001782
DOI: 10.1074/JBC.M115.659300