Calcium in PDB 4xup: Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
Enzymatic activity of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
All present enzymatic activity of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C:
3.2.1.8;
Protein crystallography data
The structure of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C, PDB code: 4xup
was solved by
M.A.Sainz-Polo,
J.Sanz-Aparicio,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
118.52 /
2.43
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
84.170,
110.359,
118.522,
90.00,
90.63,
90.00
|
R / Rfree (%)
|
22.7 /
26.5
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
(pdb code 4xup). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C, PDB code: 4xup:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 4xup
Go back to
Calcium Binding Sites List in 4xup
Calcium binding site 1 out
of 10 in the Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1001
b:38.4
occ:1.00
|
O
|
A:HOH1101
|
2.0
|
27.1
|
1.0
|
O
|
A:GLN44
|
2.2
|
31.1
|
1.0
|
O
|
A:GLN41
|
2.3
|
41.1
|
1.0
|
OE2
|
A:GLU17
|
2.4
|
50.4
|
1.0
|
OD2
|
A:ASP149
|
2.5
|
28.5
|
1.0
|
O
|
A:SER15
|
2.5
|
47.0
|
1.0
|
OD1
|
A:ASP149
|
2.5
|
29.4
|
1.0
|
CG
|
A:ASP149
|
2.8
|
29.2
|
1.0
|
C
|
A:GLN44
|
3.4
|
40.8
|
1.0
|
C
|
A:GLN41
|
3.5
|
43.2
|
1.0
|
CD
|
A:GLU17
|
3.6
|
50.0
|
1.0
|
C
|
A:SER15
|
3.6
|
42.2
|
1.0
|
OE2
|
A:GLU150
|
4.0
|
53.3
|
1.0
|
CA
|
A:SER15
|
4.2
|
38.7
|
1.0
|
N
|
A:GLN44
|
4.2
|
44.1
|
1.0
|
CG
|
A:GLU17
|
4.2
|
49.2
|
1.0
|
N
|
A:GLN41
|
4.3
|
43.8
|
1.0
|
CA
|
A:GLN44
|
4.3
|
44.3
|
1.0
|
CB
|
A:ASP149
|
4.3
|
29.6
|
1.0
|
CB
|
A:SER15
|
4.4
|
39.2
|
1.0
|
CA
|
A:GLN41
|
4.4
|
48.8
|
1.0
|
CB
|
A:ALA39
|
4.4
|
42.0
|
1.0
|
N
|
A:SER45
|
4.4
|
38.4
|
1.0
|
N
|
A:GLY42
|
4.5
|
39.8
|
1.0
|
CA
|
A:SER45
|
4.6
|
37.6
|
1.0
|
CB
|
A:GLN41
|
4.6
|
56.9
|
1.0
|
OE1
|
A:GLU17
|
4.6
|
49.4
|
1.0
|
CA
|
A:GLY42
|
4.6
|
41.4
|
1.0
|
N
|
A:PHE16
|
4.7
|
40.2
|
1.0
|
C
|
A:GLY42
|
4.8
|
40.6
|
1.0
|
N
|
A:GLU150
|
4.9
|
29.6
|
1.0
|
CB
|
A:SER45
|
5.0
|
35.0
|
1.0
|
CD
|
A:GLU150
|
5.0
|
49.0
|
1.0
|
N
|
A:TYR40
|
5.0
|
42.9
|
1.0
|
N
|
A:LYS43
|
5.0
|
40.6
|
1.0
|
|
Calcium binding site 2 out
of 10 in 4xup
Go back to
Calcium Binding Sites List in 4xup
Calcium binding site 2 out
of 10 in the Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1002
b:55.7
occ:1.00
|
O
|
A:ARG206
|
2.2
|
51.2
|
1.0
|
OE2
|
A:GLU179
|
2.3
|
62.4
|
1.0
|
O
|
A:ASP177
|
2.4
|
58.2
|
1.0
|
OD2
|
A:ASP325
|
2.4
|
51.0
|
1.0
|
OD1
|
A:ASP325
|
2.5
|
44.3
|
1.0
|
OG
|
A:SER204
|
2.7
|
61.8
|
1.0
|
CG
|
A:ASP325
|
2.8
|
47.8
|
1.0
|
C
|
A:ARG206
|
3.4
|
50.6
|
1.0
|
CB
|
A:SER204
|
3.5
|
67.2
|
1.0
|
CD
|
A:GLU179
|
3.5
|
65.7
|
1.0
|
C
|
A:ASP177
|
3.6
|
55.1
|
1.0
|
OD1
|
A:ASP326
|
4.0
|
45.0
|
1.0
|
CG
|
A:GLU179
|
4.2
|
67.0
|
1.0
|
CA
|
A:ASP177
|
4.2
|
53.9
|
1.0
|
N
|
A:ARG206
|
4.2
|
61.8
|
1.0
|
CA
|
A:ARG206
|
4.2
|
53.6
|
1.0
|
CB
|
A:ASP325
|
4.3
|
48.6
|
1.0
|
N
|
A:SER207
|
4.4
|
47.2
|
1.0
|
CB
|
A:ASP177
|
4.4
|
55.6
|
1.0
|
OE1
|
A:GLU179
|
4.4
|
57.0
|
1.0
|
CA
|
A:SER207
|
4.6
|
44.8
|
1.0
|
N
|
A:PHE178
|
4.7
|
50.2
|
1.0
|
N
|
A:HIS202
|
4.7
|
69.5
|
1.0
|
CB
|
A:ARG206
|
4.7
|
52.0
|
1.0
|
O
|
A:HIS202
|
4.8
|
71.4
|
1.0
|
CB
|
A:PHE178
|
4.8
|
46.7
|
1.0
|
CA
|
A:SER204
|
4.8
|
66.4
|
1.0
|
CA
|
A:GLY201
|
4.9
|
59.8
|
1.0
|
CG
|
A:ASP326
|
4.9
|
46.4
|
1.0
|
N
|
A:ASP326
|
4.9
|
43.1
|
1.0
|
N
|
A:GLU179
|
4.9
|
61.7
|
1.0
|
C
|
A:SER204
|
5.0
|
60.1
|
1.0
|
|
Calcium binding site 3 out
of 10 in 4xup
Go back to
Calcium Binding Sites List in 4xup
Calcium binding site 3 out
of 10 in the Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca401
b:42.9
occ:1.00
|
O
|
B:SER15
|
2.2
|
36.2
|
1.0
|
O
|
B:GLN44
|
2.4
|
39.3
|
1.0
|
OE2
|
B:GLU17
|
2.4
|
49.5
|
1.0
|
OD1
|
B:ASP149
|
2.4
|
34.3
|
1.0
|
O
|
B:GLN41
|
2.5
|
51.2
|
1.0
|
OD2
|
B:ASP149
|
2.6
|
36.9
|
1.0
|
O
|
B:HOH501
|
2.9
|
45.9
|
1.0
|
CG
|
B:ASP149
|
2.9
|
35.2
|
1.0
|
C
|
B:SER15
|
3.3
|
37.7
|
1.0
|
CD
|
B:GLU17
|
3.5
|
50.2
|
1.0
|
C
|
B:GLN44
|
3.6
|
38.4
|
1.0
|
C
|
B:GLN41
|
3.6
|
60.4
|
1.0
|
OE2
|
B:GLU150
|
3.8
|
54.1
|
1.0
|
CA
|
B:SER15
|
3.9
|
37.6
|
1.0
|
CG
|
B:GLU17
|
4.0
|
49.4
|
1.0
|
CB
|
B:SER15
|
4.1
|
39.9
|
1.0
|
N
|
B:GLN44
|
4.4
|
44.4
|
1.0
|
N
|
B:GLN41
|
4.4
|
53.4
|
1.0
|
CB
|
B:ASP149
|
4.4
|
32.8
|
1.0
|
CA
|
B:GLN41
|
4.4
|
62.6
|
1.0
|
CA
|
B:GLN44
|
4.5
|
43.4
|
1.0
|
N
|
B:PHE16
|
4.5
|
39.8
|
1.0
|
N
|
B:SER45
|
4.5
|
41.4
|
1.0
|
N
|
B:GLY42
|
4.5
|
61.0
|
1.0
|
CB
|
B:GLN41
|
4.6
|
72.5
|
1.0
|
OE1
|
B:GLU17
|
4.6
|
50.7
|
1.0
|
CA
|
B:GLY42
|
4.7
|
59.4
|
1.0
|
CB
|
B:ALA39
|
4.7
|
41.0
|
1.0
|
CA
|
B:SER45
|
4.7
|
41.7
|
1.0
|
CD
|
B:GLU150
|
4.8
|
54.3
|
1.0
|
N
|
B:GLU150
|
4.8
|
33.6
|
1.0
|
C
|
B:PHE16
|
4.9
|
44.6
|
1.0
|
CG
|
B:GLU150
|
4.9
|
48.8
|
1.0
|
OG
|
B:SER15
|
4.9
|
43.2
|
1.0
|
N
|
B:GLU17
|
5.0
|
47.0
|
1.0
|
CB
|
B:PHE16
|
5.0
|
38.6
|
1.0
|
C
|
B:GLY42
|
5.0
|
56.8
|
1.0
|
|
Calcium binding site 4 out
of 10 in 4xup
Go back to
Calcium Binding Sites List in 4xup
Calcium binding site 4 out
of 10 in the Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca402
b:42.5
occ:1.00
|
O
|
B:ARG206
|
1.9
|
33.6
|
1.0
|
O
|
B:HOH502
|
2.2
|
23.0
|
1.0
|
OE2
|
B:GLU179
|
2.2
|
42.0
|
1.0
|
O
|
B:ASP177
|
2.4
|
40.6
|
1.0
|
OD2
|
B:ASP325
|
2.5
|
40.8
|
1.0
|
OD1
|
B:ASP325
|
2.6
|
43.1
|
1.0
|
OG
|
B:SER204
|
2.8
|
46.0
|
1.0
|
CG
|
B:ASP325
|
2.9
|
41.0
|
1.0
|
C
|
B:ARG206
|
3.1
|
39.9
|
1.0
|
CD
|
B:GLU179
|
3.4
|
39.5
|
1.0
|
CB
|
B:SER204
|
3.5
|
41.0
|
1.0
|
C
|
B:ASP177
|
3.6
|
38.5
|
1.0
|
N
|
B:ARG206
|
3.9
|
38.4
|
1.0
|
CA
|
B:ARG206
|
3.9
|
42.5
|
1.0
|
N
|
B:SER207
|
4.1
|
40.3
|
1.0
|
CG
|
B:GLU179
|
4.2
|
37.4
|
1.0
|
CA
|
B:ASP177
|
4.3
|
41.1
|
1.0
|
OD1
|
B:ASP326
|
4.3
|
47.4
|
1.0
|
CB
|
B:ASP325
|
4.3
|
38.4
|
1.0
|
OE1
|
B:GLU179
|
4.4
|
41.9
|
1.0
|
CA
|
B:SER207
|
4.4
|
38.3
|
1.0
|
CB
|
B:ARG206
|
4.4
|
48.6
|
1.0
|
CB
|
B:ASP177
|
4.6
|
42.0
|
1.0
|
CB
|
B:PHE178
|
4.6
|
36.0
|
1.0
|
N
|
B:PHE178
|
4.6
|
34.6
|
1.0
|
CA
|
B:GLY201
|
4.7
|
38.8
|
1.0
|
N
|
B:GLU179
|
4.8
|
33.6
|
1.0
|
N
|
B:HIS202
|
4.8
|
39.1
|
1.0
|
CB
|
B:SER207
|
4.8
|
39.4
|
1.0
|
CA
|
B:SER204
|
4.8
|
37.8
|
1.0
|
C
|
B:PHE178
|
4.8
|
35.7
|
1.0
|
C
|
B:SER204
|
4.9
|
38.4
|
1.0
|
CA
|
B:PHE178
|
4.9
|
36.4
|
1.0
|
N
|
B:ASN205
|
4.9
|
39.9
|
1.0
|
CD2
|
B:PHE178
|
4.9
|
40.2
|
1.0
|
O
|
B:HIS202
|
5.0
|
38.5
|
1.0
|
|
Calcium binding site 5 out
of 10 in 4xup
Go back to
Calcium Binding Sites List in 4xup
Calcium binding site 5 out
of 10 in the Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca401
b:43.5
occ:1.00
|
O
|
C:HOH501
|
2.1
|
55.8
|
1.0
|
O
|
C:GLN44
|
2.2
|
61.1
|
1.0
|
O
|
C:GLN41
|
2.4
|
54.8
|
1.0
|
OE2
|
C:GLU17
|
2.4
|
50.5
|
1.0
|
O
|
C:SER15
|
2.4
|
32.0
|
1.0
|
OD1
|
C:ASP149
|
2.5
|
37.0
|
1.0
|
OD2
|
C:ASP149
|
2.5
|
40.2
|
1.0
|
CG
|
C:ASP149
|
2.9
|
36.2
|
1.0
|
C
|
C:GLN44
|
3.5
|
54.6
|
1.0
|
C
|
C:SER15
|
3.5
|
38.8
|
1.0
|
CD
|
C:GLU17
|
3.5
|
52.1
|
1.0
|
C
|
C:GLN41
|
3.5
|
59.4
|
1.0
|
OE2
|
C:GLU150
|
4.0
|
60.3
|
1.0
|
CA
|
C:SER15
|
4.1
|
42.2
|
1.0
|
CG
|
C:GLU17
|
4.1
|
50.3
|
1.0
|
N
|
C:GLN44
|
4.2
|
64.5
|
1.0
|
CB
|
C:SER15
|
4.3
|
42.9
|
1.0
|
N
|
C:GLN41
|
4.3
|
55.8
|
1.0
|
CA
|
C:GLN44
|
4.3
|
58.6
|
1.0
|
CB
|
C:ASP149
|
4.4
|
37.8
|
1.0
|
N
|
C:SER45
|
4.4
|
50.2
|
1.0
|
CA
|
C:GLN41
|
4.4
|
55.5
|
1.0
|
N
|
C:GLY42
|
4.5
|
62.1
|
1.0
|
CB
|
C:ALA39
|
4.5
|
71.0
|
1.0
|
OE1
|
C:GLU17
|
4.5
|
58.4
|
1.0
|
CA
|
C:GLY42
|
4.6
|
58.8
|
1.0
|
CA
|
C:SER45
|
4.6
|
46.8
|
1.0
|
N
|
C:PHE16
|
4.7
|
40.1
|
1.0
|
C
|
C:GLY42
|
4.8
|
61.2
|
1.0
|
N
|
C:GLU150
|
4.9
|
37.2
|
1.0
|
CD
|
C:GLU150
|
4.9
|
52.6
|
1.0
|
C
|
C:PHE16
|
5.0
|
50.6
|
1.0
|
CB
|
C:GLN41
|
5.0
|
58.3
|
1.0
|
N
|
C:LYS43
|
5.0
|
66.5
|
1.0
|
|
Calcium binding site 6 out
of 10 in 4xup
Go back to
Calcium Binding Sites List in 4xup
Calcium binding site 6 out
of 10 in the Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca401
b:37.0
occ:1.00
|
O
|
D:HOH501
|
1.7
|
31.1
|
1.0
|
OE2
|
D:GLU17
|
1.9
|
48.5
|
1.0
|
O
|
D:GLN44
|
2.0
|
33.0
|
1.0
|
OD2
|
D:ASP149
|
2.4
|
26.2
|
1.0
|
O
|
D:GLN41
|
2.4
|
31.4
|
1.0
|
OD1
|
D:ASP149
|
2.4
|
24.7
|
1.0
|
O
|
D:SER15
|
2.5
|
23.8
|
1.0
|
CG
|
D:ASP149
|
2.7
|
23.3
|
1.0
|
CD
|
D:GLU17
|
3.1
|
42.5
|
1.0
|
C
|
D:GLN44
|
3.2
|
30.9
|
1.0
|
C
|
D:GLN41
|
3.6
|
28.7
|
1.0
|
OE2
|
D:GLU150
|
3.6
|
27.6
|
1.0
|
C
|
D:SER15
|
3.6
|
23.7
|
1.0
|
OE1
|
D:GLU17
|
3.8
|
41.8
|
1.0
|
N
|
D:GLN44
|
4.1
|
33.5
|
1.0
|
N
|
D:SER45
|
4.2
|
30.4
|
1.0
|
CA
|
D:GLN44
|
4.2
|
35.2
|
1.0
|
CB
|
D:ASP149
|
4.2
|
23.7
|
1.0
|
OE2
|
A:GLU111
|
4.2
|
37.7
|
1.0
|
CG
|
D:GLU17
|
4.2
|
39.1
|
1.0
|
CA
|
D:SER15
|
4.3
|
22.1
|
1.0
|
CB
|
D:ALA39
|
4.3
|
31.4
|
1.0
|
N
|
D:GLN41
|
4.3
|
28.7
|
1.0
|
CA
|
D:SER45
|
4.3
|
30.3
|
1.0
|
CA
|
D:GLN41
|
4.4
|
28.8
|
1.0
|
CB
|
D:SER15
|
4.5
|
22.5
|
1.0
|
N
|
D:GLY42
|
4.5
|
31.0
|
1.0
|
CB
|
D:GLN41
|
4.6
|
29.9
|
1.0
|
CD
|
D:GLU150
|
4.7
|
29.4
|
1.0
|
CA
|
D:GLY42
|
4.7
|
29.7
|
1.0
|
N
|
D:PHE16
|
4.8
|
24.1
|
1.0
|
CB
|
D:SER45
|
4.8
|
28.9
|
1.0
|
C
|
D:GLY42
|
4.8
|
32.0
|
1.0
|
N
|
D:GLU150
|
4.9
|
24.2
|
1.0
|
CB
|
D:GLN44
|
4.9
|
36.3
|
1.0
|
N
|
D:TYR40
|
4.9
|
30.5
|
1.0
|
CG
|
D:GLU150
|
5.0
|
28.7
|
1.0
|
CB
|
D:PHE16
|
5.0
|
23.5
|
1.0
|
|
Calcium binding site 7 out
of 10 in 4xup
Go back to
Calcium Binding Sites List in 4xup
Calcium binding site 7 out
of 10 in the Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca402
b:40.2
occ:1.00
|
O
|
D:ARG206
|
2.0
|
43.2
|
1.0
|
O
|
D:HOH502
|
2.1
|
29.2
|
1.0
|
OE1
|
D:GLU179
|
2.1
|
59.4
|
1.0
|
OD2
|
D:ASP325
|
2.5
|
47.8
|
1.0
|
O
|
D:ASP177
|
2.5
|
42.8
|
1.0
|
OG
|
D:SER204
|
2.6
|
38.4
|
1.0
|
OD1
|
D:ASP325
|
2.6
|
41.6
|
1.0
|
CG
|
D:ASP325
|
2.9
|
43.3
|
1.0
|
C
|
D:ARG206
|
3.2
|
49.7
|
1.0
|
CD
|
D:GLU179
|
3.3
|
48.9
|
1.0
|
CB
|
D:SER204
|
3.4
|
36.3
|
1.0
|
C
|
D:ASP177
|
3.7
|
41.5
|
1.0
|
N
|
D:ARG206
|
3.9
|
47.1
|
1.0
|
CA
|
D:ARG206
|
4.0
|
51.8
|
1.0
|
OE2
|
D:GLU179
|
4.0
|
48.5
|
1.0
|
CG
|
D:GLU179
|
4.2
|
50.9
|
1.0
|
OD1
|
D:ASP326
|
4.2
|
58.9
|
1.0
|
N
|
D:SER207
|
4.2
|
46.1
|
1.0
|
CA
|
D:ASP177
|
4.3
|
43.5
|
1.0
|
CB
|
D:ASP325
|
4.4
|
40.5
|
1.0
|
CB
|
D:ARG206
|
4.5
|
57.2
|
1.0
|
CB
|
D:ASP177
|
4.5
|
46.5
|
1.0
|
CA
|
D:SER207
|
4.5
|
45.2
|
1.0
|
N
|
D:HIS202
|
4.7
|
32.4
|
1.0
|
CA
|
D:SER204
|
4.7
|
35.3
|
1.0
|
CA
|
D:GLY201
|
4.7
|
36.9
|
1.0
|
C
|
D:SER204
|
4.7
|
38.0
|
1.0
|
N
|
D:PHE178
|
4.7
|
42.0
|
1.0
|
O
|
D:HIS202
|
4.8
|
36.2
|
1.0
|
CB
|
D:PHE178
|
4.8
|
47.8
|
1.0
|
N
|
D:ASN205
|
4.8
|
41.2
|
1.0
|
N
|
D:GLU179
|
4.8
|
45.6
|
1.0
|
CB
|
D:SER207
|
4.9
|
43.2
|
1.0
|
C
|
D:PHE178
|
5.0
|
46.2
|
1.0
|
|
Calcium binding site 8 out
of 10 in 4xup
Go back to
Calcium Binding Sites List in 4xup
Calcium binding site 8 out
of 10 in the Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca401
b:26.5
occ:1.00
|
O
|
E:GLN44
|
2.3
|
30.8
|
1.0
|
O
|
E:SER15
|
2.3
|
24.9
|
1.0
|
OE2
|
E:GLU17
|
2.3
|
27.4
|
1.0
|
O
|
E:GLN41
|
2.4
|
38.2
|
1.0
|
OD1
|
E:ASP149
|
2.5
|
18.4
|
1.0
|
OG
|
E:SER15
|
2.6
|
21.8
|
1.0
|
OD2
|
E:ASP149
|
2.6
|
18.3
|
1.0
|
CG
|
E:ASP149
|
2.9
|
18.7
|
1.0
|
C
|
E:SER15
|
3.4
|
25.0
|
1.0
|
C
|
E:GLN44
|
3.5
|
29.1
|
1.0
|
CD
|
E:GLU17
|
3.5
|
33.5
|
1.0
|
C
|
E:GLN41
|
3.5
|
33.9
|
1.0
|
CB
|
E:SER15
|
3.8
|
23.0
|
1.0
|
CA
|
E:SER15
|
3.9
|
23.4
|
1.0
|
CG
|
E:GLU17
|
4.0
|
33.4
|
1.0
|
N
|
E:GLN44
|
4.2
|
30.6
|
1.0
|
CA
|
E:GLN44
|
4.3
|
30.0
|
1.0
|
CB
|
E:ASP149
|
4.4
|
20.5
|
1.0
|
CA
|
E:GLN41
|
4.4
|
32.5
|
1.0
|
N
|
E:GLN41
|
4.4
|
31.8
|
1.0
|
N
|
E:GLY42
|
4.4
|
31.9
|
1.0
|
N
|
E:SER45
|
4.5
|
26.8
|
1.0
|
OE1
|
E:GLU17
|
4.5
|
36.0
|
1.0
|
CB
|
E:GLN41
|
4.5
|
35.6
|
1.0
|
N
|
E:PHE16
|
4.6
|
24.6
|
1.0
|
CB
|
E:ALA39
|
4.6
|
37.6
|
1.0
|
CA
|
E:GLY42
|
4.6
|
32.4
|
1.0
|
CA
|
E:SER45
|
4.6
|
26.7
|
1.0
|
C
|
E:GLY42
|
4.8
|
34.7
|
1.0
|
N
|
E:GLU150
|
4.8
|
23.7
|
1.0
|
C
|
E:PHE16
|
4.9
|
28.6
|
1.0
|
CB
|
E:PHE16
|
5.0
|
25.7
|
1.0
|
CB
|
E:GLN44
|
5.0
|
32.2
|
1.0
|
N
|
E:LYS43
|
5.0
|
35.4
|
1.0
|
|
Calcium binding site 9 out
of 10 in 4xup
Go back to
Calcium Binding Sites List in 4xup
Calcium binding site 9 out
of 10 in the Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca401
b:36.6
occ:1.00
|
O
|
F:GLN44
|
2.2
|
38.1
|
1.0
|
O
|
F:HOH501
|
2.3
|
34.2
|
1.0
|
O
|
F:SER15
|
2.3
|
33.9
|
1.0
|
OE2
|
F:GLU17
|
2.3
|
47.9
|
1.0
|
O
|
F:GLN41
|
2.4
|
33.5
|
1.0
|
OD1
|
F:ASP149
|
2.5
|
42.7
|
1.0
|
OD2
|
F:ASP149
|
2.6
|
32.5
|
1.0
|
CG
|
F:ASP149
|
2.9
|
40.3
|
1.0
|
C
|
F:SER15
|
3.4
|
34.4
|
1.0
|
C
|
F:GLN44
|
3.5
|
39.1
|
1.0
|
CD
|
F:GLU17
|
3.5
|
47.4
|
1.0
|
C
|
F:GLN41
|
3.6
|
44.0
|
1.0
|
OE2
|
F:GLU150
|
4.0
|
61.5
|
1.0
|
CA
|
F:SER15
|
4.0
|
37.3
|
1.0
|
CG
|
F:GLU17
|
4.0
|
45.1
|
1.0
|
CB
|
F:SER15
|
4.2
|
38.9
|
1.0
|
N
|
F:GLN44
|
4.2
|
40.4
|
1.0
|
CA
|
F:GLN44
|
4.3
|
39.1
|
1.0
|
N
|
F:GLN41
|
4.4
|
58.3
|
1.0
|
CB
|
F:ASP149
|
4.4
|
39.2
|
1.0
|
N
|
F:SER45
|
4.4
|
34.8
|
1.0
|
CA
|
F:GLN41
|
4.5
|
53.3
|
1.0
|
OE1
|
F:GLU17
|
4.5
|
52.8
|
1.0
|
N
|
F:GLY42
|
4.5
|
41.6
|
1.0
|
N
|
F:PHE16
|
4.6
|
33.4
|
1.0
|
CB
|
F:ALA39
|
4.6
|
44.4
|
1.0
|
CA
|
F:SER45
|
4.6
|
35.3
|
1.0
|
CB
|
F:GLN41
|
4.6
|
56.1
|
1.0
|
CA
|
F:GLY42
|
4.6
|
43.6
|
1.0
|
C
|
F:PHE16
|
4.9
|
33.0
|
1.0
|
C
|
F:GLY42
|
4.9
|
45.0
|
1.0
|
N
|
F:GLU150
|
4.9
|
43.1
|
1.0
|
N
|
F:GLU17
|
4.9
|
36.3
|
1.0
|
CB
|
F:PHE16
|
4.9
|
35.2
|
1.0
|
CD
|
F:GLU150
|
5.0
|
56.6
|
1.0
|
CB
|
F:GLN44
|
5.0
|
39.6
|
1.0
|
|
Calcium binding site 10 out
of 10 in 4xup
Go back to
Calcium Binding Sites List in 4xup
Calcium binding site 10 out
of 10 in the Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Structure of the N-Terminal CBM22-1-CBM22-2 Tandem Domain From Paenibacillus Barcinonensis XYN10C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca402
b:50.4
occ:1.00
|
OE2
|
F:GLU179
|
2.3
|
60.9
|
1.0
|
O
|
F:ASP177
|
2.4
|
48.1
|
1.0
|
O
|
F:ARG206
|
2.4
|
66.7
|
1.0
|
OD1
|
F:ASP325
|
2.4
|
58.9
|
1.0
|
OD2
|
F:ASP325
|
2.5
|
57.2
|
1.0
|
OG
|
F:SER204
|
2.7
|
52.8
|
1.0
|
CG
|
F:ASP325
|
2.8
|
56.5
|
1.0
|
CB
|
F:SER204
|
3.4
|
58.4
|
1.0
|
CD
|
F:GLU179
|
3.5
|
60.5
|
1.0
|
C
|
F:ASP177
|
3.5
|
46.6
|
1.0
|
C
|
F:ARG206
|
3.6
|
65.1
|
1.0
|
OD1
|
F:ASP326
|
3.8
|
59.4
|
1.0
|
CA
|
F:ASP177
|
4.1
|
49.1
|
1.0
|
CG
|
F:GLU179
|
4.1
|
61.0
|
1.0
|
CB
|
F:ASP177
|
4.2
|
53.2
|
1.0
|
N
|
F:ARG206
|
4.3
|
66.7
|
1.0
|
CB
|
F:ASP325
|
4.3
|
57.9
|
1.0
|
CA
|
F:ARG206
|
4.4
|
66.3
|
1.0
|
OE1
|
F:GLU179
|
4.5
|
58.1
|
1.0
|
N
|
F:SER207
|
4.6
|
58.1
|
1.0
|
N
|
F:PHE178
|
4.6
|
49.3
|
1.0
|
O
|
F:HIS202
|
4.7
|
65.4
|
1.0
|
CG
|
F:ASP326
|
4.7
|
59.4
|
1.0
|
N
|
F:HIS202
|
4.8
|
54.0
|
1.0
|
CA
|
F:SER204
|
4.8
|
57.2
|
1.0
|
CA
|
F:SER207
|
4.8
|
54.7
|
1.0
|
N
|
F:ASP326
|
4.8
|
50.5
|
1.0
|
CB
|
F:ARG206
|
4.9
|
67.2
|
1.0
|
N
|
F:GLU179
|
4.9
|
65.0
|
1.0
|
CB
|
F:PHE178
|
4.9
|
47.7
|
1.0
|
|
Reference:
M.A.Sainz-Polo,
B.Gonzalez,
M.Menendez,
F.I.Pastor,
J.Sanz-Aparicio.
Exploring Multimodularity in Plant Cell Wall Deconstruction: Structural and Functional Analysis of XYN10C Containing the CBM22-1-CBM22-2 Tandem. J.Biol.Chem. V. 290 17116 2015.
ISSN: ESSN 1083-351X
PubMed: 26001782
DOI: 10.1074/JBC.M115.659300
Page generated: Sun Jul 14 14:40:53 2024
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