Calcium in PDB 4yeb: Structural Characterization of A Synaptic Adhesion Complex

The structure of Structural Characterization of A Synaptic Adhesion Complex, PDB code: 4yeb was solved by F.M.Ranaivoson, Q.Liu, F.Martini, F.Bergami, S.Von Daake, S.Li, D.Lee, B.Demeler, W.A.Hendrickson, D.Comoletti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.43 / 3.19
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	121.934, 121.934, 83.970, 90.00, 90.00, 120.00
R / Rfree (%)	25.7 / 33.6

The binding sites of Calcium atom in the Structural Characterization of A Synaptic Adhesion Complex (pdb code 4yeb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structural Characterization of A Synaptic Adhesion Complex, PDB code: 4yeb:

Calcium binding site 1 out of 1 in the Structural Characterization of A Synaptic Adhesion Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural Characterization of A Synaptic Adhesion Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:0.1 occ:1.00 O A:VAL435 2.2 0.6 1.0 OD1 A:ASP436 3.0 0.4 1.0 CB A:PHE382 3.3 0.8 1.0 C A:VAL435 3.3 0.8 1.0 O A:ALA381 3.3 0.7 1.0 CA A:ASP436 3.4 0.8 1.0 CA A:PHE382 3.7 0.4 1.0 N A:ASP436 3.8 0.3 1.0 CG A:ASP436 3.8 0.7 1.0 OD2 A:ASP332 4.0 0.9 1.0 N A:TYR437 4.0 0.2 1.0 CB A:ASP436 4.1 0.8 1.0 C A:ASP436 4.2 0.1 1.0 C A:ALA381 4.3 0.1 1.0 O A:LEU333 4.4 0.4 1.0 OD1 A:ASP332 4.4 0.4 1.0 N A:PHE382 4.5 0.4 1.0 CG A:ASP332 4.5 0.2 1.0 CG A:PHE382 4.6 0.0 1.0 CA A:VAL435 4.6 0.4 1.0 OD1 A:ASN380 4.7 0.5 1.0 CB A:ALA334 4.8 0.8 1.0 OD2 A:ASP436 4.9 0.9 1.0 C A:PHE382 4.9 0.6 1.0 CD1 A:ILE343 4.9 0.2 1.0 N A:MET383 4.9 0.8 1.0 CB A:VAL435 5.0 0.7 1.0

F.M.Ranaivoson, Q.Liu, F.Martini, F.Bergami, S.Von Daake, S.Li, D.Lee, B.Demeler, W.A.Hendrickson, D.Comoletti. Structural and Mechanistic Insights Into the LATROPHILIN3-FLRT3 Complex That Mediates Glutamatergic Synapse Development. Structure V. 23 1665 2015.
ISSN: ISSN 0969-2126
PubMed: 26235031
DOI: 10.1016/J.STR.2015.06.022