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Calcium in PDB 4yl9: Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2

Protein crystallography data

The structure of Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2, PDB code: 4yl9 was solved by L.Liu, J.Y.Chen, C.H.Yun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.88 / 2.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 65.733, 39.108, 119.674, 90.00, 91.64, 90.00
R / Rfree (%) 23.3 / 25.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2 (pdb code 4yl9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2, PDB code: 4yl9:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 4yl9

Go back to Calcium Binding Sites List in 4yl9
Calcium binding site 1 out of 4 in the Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca201

b:90.0
occ:1.00
OE2 B:GLU68 2.4 77.9 1.0
O B:HOH309 2.7 67.2 1.0
CD B:GLU68 3.2 71.9 1.0
OE1 B:GLU68 3.2 70.3 1.0
CG B:GLU68 4.6 62.6 1.0

Calcium binding site 2 out of 4 in 4yl9

Go back to Calcium Binding Sites List in 4yl9
Calcium binding site 2 out of 4 in the Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca202

b:88.3
occ:1.00
OE1 B:GLU8 2.6 78.2 0.6
O B:HOH337 3.0 69.7 1.0
CD B:GLU8 3.4 78.1 0.6
OE2 B:GLU8 3.5 82.6 0.6
CD1 B:ILE5 4.4 74.5 1.0
CG B:GLU8 4.9 72.5 0.6

Calcium binding site 3 out of 4 in 4yl9

Go back to Calcium Binding Sites List in 4yl9
Calcium binding site 3 out of 4 in the Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca202

b:0.0
occ:1.00
O D:HOH326 2.5 65.8 1.0
OE1 D:GLU19 3.2 75.1 1.0
CD D:GLU19 3.5 73.8 1.0
OE1 D:GLU22 3.7 59.9 1.0
CG D:GLU19 3.9 62.5 1.0
OE2 D:GLU19 4.2 80.7 1.0
CA D:CA201 4.3 99.2 1.0
CD D:GLU22 4.9 53.4 1.0

Calcium binding site 4 out of 4 in 4yl9

Go back to Calcium Binding Sites List in 4yl9
Calcium binding site 4 out of 4 in the Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Wild-Type of HSP14.1 From Sulfolobus Solfatataricus P2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca201

b:99.2
occ:1.00
OE2 D:GLU19 2.3 80.7 1.0
OE2 D:GLU15 2.5 73.6 1.0
OE1 D:GLU19 2.6 75.1 1.0
CD D:GLU19 2.8 73.8 1.0
CD D:GLU15 3.3 69.3 1.0
CG D:GLU15 3.8 64.8 1.0
OE1 D:GLU15 4.2 72.3 1.0
CG D:GLU19 4.3 62.5 1.0
CA C:CA202 4.3 0.0 1.0
O D:HOH326 4.5 65.8 1.0

Reference:

L.Liu, J.Y.Chen, B.Yang, F.H.Wang, Y.H.Wang, C.H.Yun. Active-State Structures of A Small Heat-Shock Protein Revealed A Molecular Switch For Chaperone Function Structure V. 23 2066 2015.
ISSN: ISSN 0969-2126
PubMed: 26439766
DOI: 10.1016/J.STR.2015.08.015
Page generated: Sun Jul 14 15:02:24 2024

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