Calcium in PDB 4yru: Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
Protein crystallography data
The structure of Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus, PDB code: 4yru
was solved by
S.Pandalaneni,
V.Karrupiah,
O.Mayans,
J.P.Derrick,
L.Y.Lian,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
66.59 /
2.80
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
72.680,
88.800,
100.670,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
24.7 /
29.1
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
(pdb code 4yru). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the
Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus, PDB code: 4yru:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 12 in 4yru
Go back to
Calcium Binding Sites List in 4yru
Calcium binding site 1 out
of 12 in the Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca201
b:63.6
occ:1.00
|
OE1
|
A:GLU81
|
2.4
|
0.9
|
1.0
|
|
OD1
|
A:ASP73
|
2.4
|
46.8
|
1.0
|
|
OD1
|
A:ASN75
|
2.4
|
73.0
|
1.0
|
|
O
|
A:ARG79
|
2.5
|
75.4
|
1.0
|
|
OD1
|
A:ASP77
|
2.5
|
64.7
|
1.0
|
|
OE1
|
A:GLU84
|
2.5
|
59.5
|
1.0
|
|
OE2
|
A:GLU84
|
2.6
|
62.1
|
1.0
|
|
OD2
|
A:ASP77
|
2.8
|
68.7
|
1.0
|
|
CD
|
A:GLU84
|
2.8
|
61.4
|
1.0
|
|
CG
|
A:ASP77
|
2.9
|
66.0
|
1.0
|
|
CD
|
A:GLU81
|
3.2
|
0.9
|
1.0
|
|
CG
|
A:ASN75
|
3.2
|
70.5
|
1.0
|
|
OE2
|
A:GLU81
|
3.3
|
0.2
|
1.0
|
|
ND2
|
A:ASN75
|
3.4
|
71.8
|
1.0
|
|
CG
|
A:ASP73
|
3.5
|
48.5
|
1.0
|
|
C
|
A:ARG79
|
3.6
|
71.9
|
1.0
|
|
CG
|
A:GLU84
|
4.2
|
60.8
|
1.0
|
|
OD2
|
A:ASP73
|
4.2
|
50.5
|
1.0
|
|
N
|
A:GLU81
|
4.3
|
71.4
|
1.0
|
|
CB
|
A:ASP77
|
4.3
|
65.9
|
1.0
|
|
N
|
A:ARG79
|
4.4
|
60.8
|
1.0
|
|
N
|
A:ASP77
|
4.4
|
63.2
|
1.0
|
|
CA
|
A:ARG79
|
4.4
|
67.0
|
1.0
|
|
N
|
A:ILE80
|
4.5
|
71.3
|
1.0
|
|
CB
|
A:ASP73
|
4.5
|
45.9
|
1.0
|
|
CA
|
A:ILE80
|
4.5
|
48.3
|
1.0
|
|
CA
|
A:ASP73
|
4.6
|
49.7
|
1.0
|
|
CG
|
A:GLU81
|
4.6
|
97.4
|
1.0
|
|
CB
|
A:ARG79
|
4.6
|
75.3
|
1.0
|
|
CB
|
A:ASN75
|
4.6
|
65.4
|
1.0
|
|
N
|
A:ASN75
|
4.7
|
58.5
|
1.0
|
|
N
|
A:LYS76
|
4.8
|
56.4
|
1.0
|
|
CA
|
A:ASP77
|
4.9
|
65.4
|
1.0
|
|
C
|
A:ASP73
|
4.9
|
54.0
|
1.0
|
|
C
|
A:ILE80
|
4.9
|
65.7
|
1.0
|
|
N
|
A:GLU74
|
5.0
|
56.1
|
1.0
|
|
CB
|
A:GLU81
|
5.0
|
87.7
|
1.0
|
|
Calcium binding site 2 out
of 12 in 4yru
Go back to
Calcium Binding Sites List in 4yru
Calcium binding site 2 out
of 12 in the Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:34.2
occ:1.00
|
OE1
|
A:GLU120
|
2.4
|
42.6
|
1.0
|
|
OD1
|
A:ASP111
|
2.4
|
55.7
|
1.0
|
|
OD1
|
A:ASP113
|
2.4
|
58.6
|
1.0
|
|
O
|
A:TYR115
|
2.5
|
61.5
|
1.0
|
|
OE2
|
A:GLU120
|
2.6
|
46.1
|
1.0
|
|
OD1
|
A:ASP109
|
2.7
|
33.7
|
1.0
|
|
CD
|
A:GLU120
|
2.8
|
46.1
|
1.0
|
|
CG
|
A:ASP113
|
3.3
|
56.1
|
1.0
|
|
CG
|
A:ASP111
|
3.4
|
53.2
|
1.0
|
|
C
|
A:TYR115
|
3.5
|
46.9
|
1.0
|
|
OD2
|
A:ASP113
|
3.5
|
54.6
|
1.0
|
|
OD2
|
A:ASP111
|
3.7
|
55.3
|
1.0
|
|
CG
|
A:ASP109
|
3.8
|
37.3
|
1.0
|
|
CA
|
A:TYR115
|
4.3
|
44.2
|
1.0
|
|
CG2
|
A:THR117
|
4.3
|
57.0
|
1.0
|
|
N
|
A:TYR115
|
4.3
|
40.1
|
1.0
|
|
CG
|
A:GLU120
|
4.3
|
34.6
|
1.0
|
|
N
|
A:ILE116
|
4.4
|
40.3
|
1.0
|
|
CA
|
A:ASP109
|
4.4
|
35.1
|
1.0
|
|
CB
|
A:TYR115
|
4.4
|
48.8
|
1.0
|
|
CA
|
A:ILE116
|
4.4
|
37.7
|
1.0
|
|
N
|
A:THR117
|
4.4
|
46.8
|
1.0
|
|
N
|
A:ASP111
|
4.5
|
51.3
|
1.0
|
|
N
|
A:LEU110
|
4.6
|
46.2
|
1.0
|
|
N
|
A:ASP113
|
4.6
|
47.3
|
1.0
|
|
CB
|
A:ASP109
|
4.6
|
31.2
|
1.0
|
|
CB
|
A:ASP113
|
4.6
|
52.5
|
1.0
|
|
OD2
|
A:ASP109
|
4.7
|
37.7
|
1.0
|
|
CB
|
A:ASP111
|
4.7
|
55.8
|
1.0
|
|
C
|
A:ASP109
|
4.7
|
42.2
|
1.0
|
|
N
|
A:ASN112
|
4.9
|
44.0
|
1.0
|
|
C
|
A:ILE116
|
4.9
|
41.9
|
1.0
|
|
OG1
|
A:THR117
|
4.9
|
73.4
|
1.0
|
|
Calcium binding site 3 out
of 12 in 4yru
Go back to
Calcium Binding Sites List in 4yru
Calcium binding site 3 out
of 12 in the Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca203
b:34.8
occ:1.00
|
OD1
|
A:ASN159
|
2.4
|
39.5
|
1.0
|
|
OE1
|
A:GLU168
|
2.4
|
38.6
|
1.0
|
|
OD1
|
A:ASP161
|
2.4
|
39.8
|
1.0
|
|
O
|
A:LYS163
|
2.5
|
47.9
|
1.0
|
|
OE2
|
A:GLU168
|
2.5
|
35.3
|
1.0
|
|
OD1
|
A:ASP157
|
2.5
|
43.5
|
1.0
|
|
CD
|
A:GLU168
|
2.8
|
33.8
|
1.0
|
|
OD2
|
A:ASP161
|
3.0
|
40.6
|
1.0
|
|
CG
|
A:ASP161
|
3.0
|
41.2
|
1.0
|
|
CG
|
A:ASN159
|
3.3
|
40.9
|
1.0
|
|
ND2
|
A:ASN159
|
3.6
|
41.9
|
1.0
|
|
C
|
A:LYS163
|
3.6
|
35.2
|
1.0
|
|
CG
|
A:ASP157
|
3.7
|
44.8
|
1.0
|
|
CG
|
A:GLU168
|
4.3
|
32.5
|
1.0
|
|
OD2
|
A:ASP157
|
4.4
|
48.4
|
1.0
|
|
CB
|
A:ASP161
|
4.4
|
47.7
|
1.0
|
|
N
|
A:LYS163
|
4.4
|
38.8
|
1.0
|
|
N
|
A:ASP161
|
4.5
|
43.7
|
1.0
|
|
CA
|
A:LYS163
|
4.5
|
37.0
|
1.0
|
|
N
|
A:LEU164
|
4.5
|
33.6
|
1.0
|
|
CA
|
A:LEU164
|
4.5
|
32.2
|
1.0
|
|
CA
|
A:ASP157
|
4.7
|
45.4
|
1.0
|
|
CB
|
A:ASN159
|
4.7
|
48.7
|
1.0
|
|
CB
|
A:LYS163
|
4.7
|
37.9
|
1.0
|
|
CB
|
A:ASP157
|
4.8
|
37.4
|
1.0
|
|
N
|
A:ASN159
|
4.8
|
40.5
|
1.0
|
|
N
|
A:THR165
|
4.8
|
31.7
|
1.0
|
|
CG2
|
A:THR165
|
4.9
|
33.9
|
1.0
|
|
CA
|
A:ASP161
|
4.9
|
44.7
|
1.0
|
|
N
|
A:ALA160
|
4.9
|
47.3
|
1.0
|
|
Calcium binding site 4 out
of 12 in 4yru
Go back to
Calcium Binding Sites List in 4yru
Calcium binding site 4 out
of 12 in the Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca201
b:53.7
occ:1.00
|
OE1
|
B:GLU81
|
2.4
|
89.6
|
1.0
|
|
OD1
|
B:ASP73
|
2.4
|
45.5
|
1.0
|
|
OD1
|
B:ASP77
|
2.4
|
63.5
|
1.0
|
|
O
|
B:ARG79
|
2.4
|
60.5
|
1.0
|
|
OD1
|
B:ASN75
|
2.5
|
53.1
|
1.0
|
|
OE1
|
B:GLU84
|
2.5
|
50.9
|
1.0
|
|
OE2
|
B:GLU84
|
2.6
|
53.6
|
1.0
|
|
CD
|
B:GLU84
|
2.8
|
52.0
|
1.0
|
|
OD2
|
B:ASP77
|
2.9
|
60.3
|
1.0
|
|
CG
|
B:ASP77
|
3.0
|
58.1
|
1.0
|
|
CD
|
B:GLU81
|
3.1
|
89.9
|
1.0
|
|
OE2
|
B:GLU81
|
3.2
|
92.9
|
1.0
|
|
CG
|
B:ASN75
|
3.4
|
53.5
|
1.0
|
|
CG
|
B:ASP73
|
3.5
|
51.4
|
1.0
|
|
C
|
B:ARG79
|
3.5
|
58.1
|
1.0
|
|
ND2
|
B:ASN75
|
3.7
|
57.3
|
1.0
|
|
CG
|
B:GLU84
|
4.2
|
57.0
|
1.0
|
|
OD2
|
B:ASP73
|
4.3
|
51.9
|
1.0
|
|
N
|
B:GLU81
|
4.3
|
61.0
|
1.0
|
|
N
|
B:ARG79
|
4.3
|
63.9
|
1.0
|
|
CA
|
B:ARG79
|
4.3
|
62.2
|
1.0
|
|
CB
|
B:ASP73
|
4.4
|
51.1
|
1.0
|
|
CA
|
B:ASP73
|
4.4
|
55.5
|
1.0
|
|
CB
|
B:ASP77
|
4.4
|
57.8
|
1.0
|
|
N
|
B:ILE80
|
4.5
|
58.7
|
1.0
|
|
N
|
B:ASP77
|
4.5
|
57.1
|
1.0
|
|
CG
|
B:GLU81
|
4.5
|
84.3
|
1.0
|
|
CB
|
B:ARG79
|
4.5
|
67.6
|
1.0
|
|
CA
|
B:ILE80
|
4.5
|
38.5
|
1.0
|
|
N
|
B:ASN75
|
4.7
|
53.6
|
1.0
|
|
CB
|
B:ASN75
|
4.8
|
55.8
|
1.0
|
|
C
|
B:ASP73
|
4.8
|
53.1
|
1.0
|
|
N
|
B:GLU74
|
4.9
|
53.9
|
1.0
|
|
N
|
B:LYS76
|
4.9
|
49.4
|
1.0
|
|
C
|
B:ILE80
|
4.9
|
62.4
|
1.0
|
|
CA
|
B:ASP77
|
4.9
|
55.8
|
1.0
|
|
CB
|
B:GLU81
|
5.0
|
75.5
|
1.0
|
|
Calcium binding site 5 out
of 12 in 4yru
Go back to
Calcium Binding Sites List in 4yru
Calcium binding site 5 out
of 12 in the Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca202
b:44.0
occ:1.00
|
OD1
|
B:ASP111
|
2.4
|
54.7
|
1.0
|
|
O
|
B:TYR115
|
2.4
|
56.9
|
1.0
|
|
OE1
|
B:GLU120
|
2.4
|
56.3
|
1.0
|
|
OD1
|
B:ASP113
|
2.4
|
51.9
|
1.0
|
|
OD1
|
B:ASP109
|
2.7
|
53.3
|
1.0
|
|
OE2
|
B:GLU120
|
2.8
|
54.9
|
1.0
|
|
CD
|
B:GLU120
|
3.0
|
53.4
|
1.0
|
|
CG
|
B:ASP113
|
3.3
|
54.8
|
1.0
|
|
CG
|
B:ASP111
|
3.3
|
54.3
|
1.0
|
|
C
|
B:TYR115
|
3.4
|
51.9
|
1.0
|
|
OD2
|
B:ASP113
|
3.6
|
47.8
|
1.0
|
|
OD2
|
B:ASP111
|
3.6
|
46.7
|
1.0
|
|
CG
|
B:ASP109
|
3.9
|
53.6
|
1.0
|
|
CA
|
B:TYR115
|
4.2
|
49.7
|
1.0
|
|
N
|
B:TYR115
|
4.3
|
50.5
|
1.0
|
|
N
|
B:ILE116
|
4.3
|
49.1
|
1.0
|
|
CB
|
B:TYR115
|
4.4
|
52.9
|
1.0
|
|
CG2
|
B:THR117
|
4.4
|
60.7
|
1.0
|
|
CA
|
B:ILE116
|
4.4
|
51.0
|
1.0
|
|
CA
|
B:ASP109
|
4.4
|
45.7
|
1.0
|
|
CG
|
B:GLU120
|
4.4
|
54.0
|
1.0
|
|
N
|
B:THR117
|
4.5
|
44.0
|
1.0
|
|
N
|
B:ASP111
|
4.5
|
47.0
|
1.0
|
|
N
|
B:ASP113
|
4.6
|
61.0
|
1.0
|
|
CB
|
B:ASP113
|
4.6
|
47.3
|
1.0
|
|
CB
|
B:ASP111
|
4.7
|
51.0
|
1.0
|
|
CB
|
B:ASP109
|
4.7
|
38.3
|
1.0
|
|
N
|
B:LEU110
|
4.7
|
48.3
|
1.0
|
|
OD2
|
B:ASP109
|
4.7
|
54.5
|
1.0
|
|
C
|
B:ASP109
|
4.8
|
48.9
|
1.0
|
|
N
|
B:ASN112
|
4.8
|
49.4
|
1.0
|
|
C
|
B:ILE116
|
4.9
|
52.7
|
1.0
|
|
Calcium binding site 6 out
of 12 in 4yru
Go back to
Calcium Binding Sites List in 4yru
Calcium binding site 6 out
of 12 in the Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca203
b:46.0
occ:1.00
|
OD1
|
B:ASN159
|
2.4
|
67.0
|
1.0
|
|
O
|
B:LYS163
|
2.4
|
56.5
|
1.0
|
|
OE1
|
B:GLU168
|
2.4
|
53.0
|
1.0
|
|
OD1
|
B:ASP157
|
2.5
|
51.7
|
1.0
|
|
OD1
|
B:ASP161
|
2.5
|
62.0
|
1.0
|
|
OE2
|
B:GLU168
|
2.6
|
65.4
|
1.0
|
|
CD
|
B:GLU168
|
2.9
|
48.0
|
1.0
|
|
OD2
|
B:ASP161
|
3.1
|
55.0
|
1.0
|
|
CG
|
B:ASP161
|
3.1
|
55.3
|
1.0
|
|
CG
|
B:ASN159
|
3.4
|
68.8
|
1.0
|
|
C
|
B:LYS163
|
3.6
|
47.8
|
1.0
|
|
CG
|
B:ASP157
|
3.7
|
57.6
|
1.0
|
|
ND2
|
B:ASN159
|
3.7
|
68.6
|
1.0
|
|
CG
|
B:GLU168
|
4.4
|
46.5
|
1.0
|
|
OD2
|
B:ASP157
|
4.4
|
60.0
|
1.0
|
|
CA
|
B:LEU164
|
4.4
|
44.5
|
1.0
|
|
N
|
B:LEU164
|
4.4
|
45.7
|
1.0
|
|
N
|
B:LYS163
|
4.5
|
54.2
|
1.0
|
|
CA
|
B:LYS163
|
4.5
|
49.1
|
1.0
|
|
CB
|
B:ASP161
|
4.5
|
58.4
|
1.0
|
|
N
|
B:ASP161
|
4.6
|
57.8
|
1.0
|
|
CA
|
B:ASP157
|
4.6
|
68.0
|
1.0
|
|
N
|
B:ASN159
|
4.7
|
56.1
|
1.0
|
|
N
|
B:THR165
|
4.7
|
44.2
|
1.0
|
|
CB
|
B:ASN159
|
4.7
|
58.3
|
1.0
|
|
CB
|
B:ASP157
|
4.8
|
50.9
|
1.0
|
|
N
|
B:LYS158
|
4.8
|
55.2
|
1.0
|
|
CB
|
B:LYS163
|
4.8
|
52.6
|
1.0
|
|
CG2
|
B:THR165
|
4.8
|
47.1
|
1.0
|
|
CD2
|
B:LEU164
|
4.9
|
45.1
|
1.0
|
|
N
|
B:ALA160
|
5.0
|
58.0
|
1.0
|
|
C
|
B:ASP157
|
5.0
|
52.1
|
1.0
|
|
Calcium binding site 7 out
of 12 in 4yru
Go back to
Calcium Binding Sites List in 4yru
Calcium binding site 7 out
of 12 in the Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca201
b:41.0
occ:1.00
|
OD1
|
C:ASN75
|
2.4
|
51.6
|
1.0
|
|
O
|
C:ARG79
|
2.4
|
33.8
|
1.0
|
|
OE1
|
C:GLU84
|
2.4
|
36.2
|
1.0
|
|
OE2
|
C:GLU84
|
2.5
|
33.1
|
1.0
|
|
OD1
|
C:ASP73
|
2.5
|
49.8
|
1.0
|
|
OD1
|
C:ASP77
|
2.5
|
60.6
|
1.0
|
|
OE1
|
C:GLU81
|
2.6
|
54.1
|
1.0
|
|
CD
|
C:GLU84
|
2.8
|
32.6
|
1.0
|
|
OD2
|
C:ASP77
|
3.1
|
60.4
|
1.0
|
|
CG
|
C:ASP77
|
3.1
|
58.2
|
1.0
|
|
CG
|
C:ASN75
|
3.4
|
52.3
|
1.0
|
|
CG
|
C:ASP73
|
3.6
|
44.3
|
1.0
|
|
CD
|
C:GLU81
|
3.6
|
55.7
|
1.0
|
|
C
|
C:ARG79
|
3.6
|
38.3
|
1.0
|
|
ND2
|
C:ASN75
|
3.8
|
51.2
|
1.0
|
|
OE2
|
C:GLU81
|
4.0
|
54.9
|
1.0
|
|
CA
|
C:ASP73
|
4.1
|
39.5
|
1.0
|
|
CG
|
C:GLU84
|
4.2
|
32.2
|
1.0
|
|
CB
|
C:ASP73
|
4.3
|
39.9
|
1.0
|
|
N
|
C:GLU81
|
4.3
|
39.9
|
1.0
|
|
CA
|
C:ILE80
|
4.4
|
42.0
|
1.0
|
|
N
|
C:ASP77
|
4.4
|
51.0
|
1.0
|
|
N
|
C:ILE80
|
4.5
|
40.7
|
1.0
|
|
N
|
C:ARG79
|
4.5
|
43.9
|
1.0
|
|
CB
|
C:ASP77
|
4.5
|
55.3
|
1.0
|
|
OD2
|
C:ASP73
|
4.5
|
40.4
|
1.0
|
|
N
|
C:GLU74
|
4.6
|
37.6
|
1.0
|
|
C
|
C:ASP73
|
4.6
|
37.0
|
1.0
|
|
N
|
C:ASN75
|
4.6
|
60.8
|
1.0
|
|
CA
|
C:ARG79
|
4.6
|
41.4
|
1.0
|
|
CB
|
C:ASN75
|
4.7
|
54.6
|
1.0
|
|
N
|
C:LYS76
|
4.7
|
49.4
|
1.0
|
|
C
|
C:ILE80
|
4.9
|
41.9
|
1.0
|
|
CG
|
C:GLU81
|
4.9
|
35.7
|
1.0
|
|
CA
|
C:ASP77
|
5.0
|
50.4
|
1.0
|
|
Calcium binding site 8 out
of 12 in 4yru
Go back to
Calcium Binding Sites List in 4yru
Calcium binding site 8 out
of 12 in the Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca202
b:54.8
occ:1.00
|
OE2
|
C:GLU120
|
2.4
|
38.4
|
1.0
|
|
OD1
|
C:ASP113
|
2.4
|
63.8
|
1.0
|
|
OD1
|
C:ASP111
|
2.5
|
39.4
|
1.0
|
|
OD1
|
C:ASP109
|
2.5
|
49.3
|
1.0
|
|
OE1
|
C:GLU120
|
2.5
|
38.8
|
1.0
|
|
O
|
C:TYR115
|
2.6
|
42.2
|
1.0
|
|
CD
|
C:GLU120
|
2.8
|
38.5
|
1.0
|
|
OD2
|
C:ASP113
|
2.9
|
65.2
|
1.0
|
|
CG
|
C:ASP113
|
2.9
|
59.8
|
1.0
|
|
CG
|
C:ASP111
|
3.4
|
40.1
|
1.0
|
|
C
|
C:TYR115
|
3.5
|
45.7
|
1.0
|
|
CG
|
C:ASP109
|
3.6
|
45.3
|
1.0
|
|
OD2
|
C:ASP111
|
3.7
|
41.5
|
1.0
|
|
CA
|
C:TYR115
|
4.2
|
48.9
|
1.0
|
|
N
|
C:TYR115
|
4.2
|
56.6
|
1.0
|
|
CB
|
C:TYR115
|
4.2
|
49.9
|
1.0
|
|
CG
|
C:GLU120
|
4.3
|
43.3
|
1.0
|
|
CB
|
C:ASP113
|
4.3
|
56.2
|
1.0
|
|
OD2
|
C:ASP109
|
4.3
|
50.6
|
1.0
|
|
N
|
C:ASP113
|
4.4
|
49.8
|
1.0
|
|
CG2
|
C:THR117
|
4.4
|
47.8
|
1.0
|
|
CA
|
C:ASP109
|
4.4
|
43.5
|
1.0
|
|
N
|
C:ILE116
|
4.5
|
39.9
|
1.0
|
|
CB
|
C:ASP109
|
4.5
|
42.8
|
1.0
|
|
CA
|
C:ILE116
|
4.6
|
47.5
|
1.0
|
|
N
|
C:ASP111
|
4.6
|
37.1
|
1.0
|
|
N
|
C:THR117
|
4.7
|
40.7
|
1.0
|
|
N
|
C:LEU110
|
4.8
|
35.4
|
1.0
|
|
CB
|
C:ASP111
|
4.8
|
42.7
|
1.0
|
|
C
|
C:ASP109
|
4.8
|
45.1
|
1.0
|
|
CA
|
C:ASP113
|
4.8
|
49.6
|
1.0
|
|
N
|
C:ASN112
|
4.8
|
42.5
|
1.0
|
|
Calcium binding site 9 out
of 12 in 4yru
Go back to
Calcium Binding Sites List in 4yru
Calcium binding site 9 out
of 12 in the Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca203
b:71.1
occ:1.00
|
OD1
|
C:ASN159
|
2.4
|
64.3
|
1.0
|
|
OD1
|
C:ASP161
|
2.4
|
73.5
|
1.0
|
|
OE1
|
C:GLU168
|
2.5
|
60.9
|
1.0
|
|
OE2
|
C:GLU168
|
2.5
|
63.0
|
1.0
|
|
O
|
C:LYS163
|
2.7
|
47.9
|
1.0
|
|
CD
|
C:GLU168
|
2.8
|
58.9
|
1.0
|
|
OD2
|
C:ASP161
|
2.8
|
74.3
|
1.0
|
|
OD1
|
C:ASP157
|
2.9
|
49.3
|
1.0
|
|
CG
|
C:ASP161
|
2.9
|
71.5
|
1.0
|
|
CG
|
C:ASN159
|
3.2
|
64.1
|
1.0
|
|
ND2
|
C:ASN159
|
3.4
|
66.8
|
1.0
|
|
C
|
C:LYS163
|
3.8
|
54.3
|
1.0
|
|
CG
|
C:ASP157
|
4.1
|
49.5
|
1.0
|
|
CG
|
C:GLU168
|
4.3
|
52.5
|
1.0
|
|
CB
|
C:ASP161
|
4.4
|
72.5
|
1.0
|
|
CG2
|
C:THR165
|
4.4
|
48.0
|
1.0
|
|
CA
|
C:LYS163
|
4.6
|
59.8
|
1.0
|
|
N
|
C:LEU164
|
4.6
|
51.1
|
1.0
|
|
CB
|
C:ASN159
|
4.6
|
62.0
|
1.0
|
|
N
|
C:THR165
|
4.6
|
42.6
|
1.0
|
|
CA
|
C:LEU164
|
4.6
|
42.6
|
1.0
|
|
N
|
C:LYS163
|
4.7
|
69.2
|
1.0
|
|
OD2
|
C:ASP157
|
4.7
|
50.3
|
1.0
|
|
N
|
C:ASP161
|
4.7
|
63.2
|
1.0
|
|
CB
|
C:LYS163
|
4.7
|
64.1
|
1.0
|
|
N
|
C:ASN159
|
4.9
|
61.5
|
1.0
|
|
Calcium binding site 10 out
of 12 in 4yru
Go back to
Calcium Binding Sites List in 4yru
Calcium binding site 10 out
of 12 in the Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of C-Terminally Truncated Neuronal Calcium Sensor (Ncs-1) From Rattus Norvegicus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca201
b:47.0
occ:1.00
|
O
|
D:ARG79
|
2.3
|
46.4
|
1.0
|
|
OD1
|
D:ASN75
|
2.4
|
50.4
|
1.0
|
|
OE1
|
D:GLU84
|
2.4
|
35.5
|
1.0
|
|
OE1
|
D:GLU81
|
2.5
|
49.6
|
1.0
|
|
OD1
|
D:ASP77
|
2.5
|
52.2
|
1.0
|
|
OD1
|
D:ASP73
|
2.5
|
59.1
|
1.0
|
|
OE2
|
D:GLU84
|
2.6
|
36.2
|
1.0
|
|
CD
|
D:GLU84
|
2.8
|
35.6
|
1.0
|
|
OD2
|
D:ASP77
|
3.0
|
54.5
|
1.0
|
|
CG
|
D:ASP77
|
3.1
|
53.5
|
1.0
|
|
CG
|
D:ASN75
|
3.4
|
48.4
|
1.0
|
|
CD
|
D:GLU81
|
3.5
|
47.3
|
1.0
|
|
C
|
D:ARG79
|
3.5
|
46.7
|
1.0
|
|
CG
|
D:ASP73
|
3.6
|
45.6
|
1.0
|
|
ND2
|
D:ASN75
|
3.7
|
54.1
|
1.0
|
|
OE2
|
D:GLU81
|
3.8
|
46.8
|
1.0
|
|
CA
|
D:ASP73
|
4.2
|
39.3
|
1.0
|
|
N
|
D:GLU81
|
4.2
|
46.4
|
1.0
|
|
CG
|
D:GLU84
|
4.2
|
35.0
|
1.0
|
|
CB
|
D:ASP73
|
4.3
|
40.4
|
1.0
|
|
CA
|
D:ILE80
|
4.3
|
45.0
|
1.0
|
|
N
|
D:ILE80
|
4.4
|
44.6
|
1.0
|
|
N
|
D:ARG79
|
4.4
|
38.8
|
1.0
|
|
N
|
D:ASP77
|
4.4
|
40.4
|
1.0
|
|
OD2
|
D:ASP73
|
4.4
|
43.1
|
1.0
|
|
CB
|
D:ASP77
|
4.5
|
42.3
|
1.0
|
|
CA
|
D:ARG79
|
4.5
|
38.4
|
1.0
|
|
N
|
D:ASN75
|
4.6
|
48.1
|
1.0
|
|
C
|
D:ASP73
|
4.7
|
40.8
|
1.0
|
|
CB
|
D:ASN75
|
4.7
|
45.8
|
1.0
|
|
N
|
D:GLU74
|
4.7
|
42.5
|
1.0
|
|
N
|
D:LYS76
|
4.8
|
58.7
|
1.0
|
|
CG
|
D:GLU81
|
4.8
|
44.5
|
1.0
|
|
C
|
D:ILE80
|
4.8
|
36.1
|
1.0
|
|
CA
|
D:ASP77
|
4.9
|
41.9
|
1.0
|
|
CB
|
D:ARG79
|
4.9
|
53.2
|
1.0
|
|
Reference:
S.Pandalaneni,
V.Karrupiah,
O.Mayans,
J.P.Derrick,
L.Y.Lian.
Structures of Neuronal Calcium Sensor-1 Complexes with the D2 Dopamine Receptor and Gpcr Kinase 1 (GRK1) Peptides Shows Different Modes of Interactions To Be Published.
Page generated: Sat Dec 12 05:13:50 2020
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