Calcium in PDB 4ysm: Calcium-Dependent Protein Kinase From Eimeria Tenella

The structure of Calcium-Dependent Protein Kinase From Eimeria Tenella, PDB code: 4ysm was solved by E.A.Merritt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.84 / 3.19
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	66.669, 109.556, 77.729, 90.00, 92.17, 90.00
R / Rfree (%)	22.8 / 28

The binding sites of Calcium atom in the Calcium-Dependent Protein Kinase From Eimeria Tenella (pdb code 4ysm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Calcium-Dependent Protein Kinase From Eimeria Tenella, PDB code: 4ysm:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in the Calcium-Dependent Protein Kinase From Eimeria Tenella


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Calcium-Dependent Protein Kinase From Eimeria Tenella within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:56.2 occ:1.00 OE1 A:GLU356 2.3 54.3 1.0 O A:GLN351 2.3 58.0 1.0 OD2 A:ASP349 2.3 63.1 1.0 OD1 A:ASN347 2.3 60.1 1.0 OD1 A:ASP345 2.4 59.4 1.0 CD A:GLU356 3.0 55.9 1.0 CG A:ASN347 3.1 60.3 1.0 CG A:ASP349 3.1 64.3 1.0 OE2 A:GLU356 3.1 57.8 1.0 ND2 A:ASN347 3.2 59.8 1.0 OD1 A:ASP349 3.3 61.9 1.0 C A:GLN351 3.4 58.2 1.0 CG A:ASP345 3.5 60.2 1.0 N A:GLN351 4.0 60.2 1.0 CA A:GLN351 4.1 59.0 1.0 OD2 A:ASP345 4.1 58.1 1.0 CB A:GLN351 4.2 59.8 1.0 OD2 A:ASP353 4.3 55.1 1.0 CG A:GLU356 4.3 55.9 1.0 N A:LEU352 4.4 55.8 1.0 CB A:ASN347 4.5 62.3 1.0 CA A:LEU352 4.5 53.8 1.0 CB A:ASP349 4.5 64.6 1.0 N A:ASP349 4.6 63.3 1.0 N A:ASP353 4.6 52.5 1.0 CB A:ASP345 4.6 60.5 1.0 CG A:ASP353 4.8 54.5 1.0 CA A:ASP345 4.8 64.0 1.0 N A:ASN347 4.8 59.3 1.0 C A:LEU352 4.8 53.4 1.0 N A:GLY350 4.9 64.7 1.0 CA A:ASP349 4.9 64.3 1.0 C A:ASN347 5.0 63.4 1.0 N A:GLY348 5.0 63.5 1.0 CA A:ASN347 5.0 61.9 1.0

Calcium binding site 2 out of 8 in the Calcium-Dependent Protein Kinase From Eimeria Tenella


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Calcium-Dependent Protein Kinase From Eimeria Tenella within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:58.8 occ:1.00 OE2 A:GLU400 2.3 59.0 1.0 OD1 A:ASP392 2.3 57.4 1.0 O A:PHE398 2.3 55.3 1.0 OD1 A:ASP394 2.3 59.5 1.0 OE2 A:GLU403 2.3 56.9 1.0 OD1 A:ASN396 2.3 58.5 1.0 OE1 A:GLU403 2.3 58.8 1.0 CD A:GLU403 2.7 54.4 1.0 CG A:ASN396 3.4 57.6 1.0 CG A:ASP392 3.4 59.6 1.0 CG A:ASP394 3.4 59.4 1.0 C A:PHE398 3.5 56.3 1.0 CD A:GLU400 3.5 61.8 1.0 ND2 A:ASN396 3.9 59.6 1.0 N A:ASP394 4.0 55.1 1.0 OE1 A:GLU400 4.1 61.5 1.0 OD2 A:ASP394 4.1 60.6 1.0 OD2 A:ASP392 4.1 63.0 1.0 N A:GLU400 4.1 54.0 1.0 CA A:ASP392 4.1 58.1 1.0 CG A:GLU403 4.2 49.8 1.0 CB A:ASP392 4.3 58.7 1.0 N A:PHE398 4.3 58.0 1.0 CA A:ILE399 4.3 52.9 1.0 C A:ASP392 4.3 58.3 1.0 N A:ILE399 4.3 55.5 1.0 CA A:PHE398 4.4 59.2 1.0 N A:PHE393 4.4 56.9 1.0 CB A:ASP394 4.4 57.5 1.0 N A:LYS395 4.5 57.3 1.0 CA A:ASP394 4.5 55.7 1.0 N A:ASN396 4.5 57.2 1.0 CG A:GLU400 4.6 62.5 1.0 CB A:ASN396 4.6 58.1 1.0 CB A:GLU400 4.6 58.8 1.0 C A:ASP394 4.7 56.5 1.0 C A:ILE399 4.7 53.0 1.0 CB A:PHE398 4.8 63.0 1.0 O A:ASP392 4.9 62.0 1.0

Calcium binding site 3 out of 8 in the Calcium-Dependent Protein Kinase From Eimeria Tenella


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Calcium-Dependent Protein Kinase From Eimeria Tenella within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:83.5 occ:1.00 OD2 A:ASP430 2.3 85.4 1.0 O A:LYS434 2.3 81.6 1.0 OG A:SER432 2.3 75.2 1.0 OE2 A:GLU439 2.3 82.9 1.0 OE1 A:GLU439 2.3 89.5 1.0 OD1 A:ASP428 2.4 77.5 1.0 OD1 A:ASP430 2.4 89.3 1.0 CG A:ASP430 2.6 83.9 1.0 CD A:GLU439 2.6 85.7 1.0 C A:LYS434 3.5 82.4 1.0 CB A:SER432 3.6 76.0 1.0 CG A:ASP428 3.6 73.5 1.0 CB A:ASP430 4.0 80.7 1.0 CG A:GLU439 4.1 82.1 1.0 N A:SER432 4.2 73.7 1.0 N A:LYS434 4.3 78.8 1.0 CA A:ASP428 4.4 69.2 1.0 N A:ASP430 4.4 73.7 1.0 N A:ILE435 4.4 79.0 1.0 N A:SER436 4.4 73.6 1.0 CA A:SER432 4.4 76.2 1.0 CA A:LYS434 4.5 83.2 1.0 CA A:ILE435 4.5 73.7 1.0 OD2 A:ASP428 4.5 73.7 1.0 CB A:ASP428 4.5 71.3 1.0 C A:ASP428 4.6 67.1 1.0 CA A:ASP430 4.7 78.2 1.0 N A:ALA429 4.8 67.0 1.0 OG A:SER436 4.8 72.6 1.0 N A:GLY431 4.9 75.4 1.0 C A:ILE435 4.9 72.3 1.0 C A:ASP430 4.9 78.5 1.0 C A:SER432 5.0 75.8 1.0

Calcium binding site 4 out of 8 in the Calcium-Dependent Protein Kinase From Eimeria Tenella


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Calcium-Dependent Protein Kinase From Eimeria Tenella within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:0.4 occ:1.00 OD1 A:ASN464 2.3 0.6 1.0 OD1 A:ASP466 2.3 0.8 1.0 O A:GLU468 2.3 96.4 1.0 OE1 A:GLU473 2.3 0.6 1.0 OD2 A:ASP462 2.3 99.8 1.0 OE2 A:GLU473 2.3 0.6 1.0 CD A:GLU473 2.6 98.0 1.0 CG A:ASP466 3.0 97.8 1.0 CG A:ASN464 3.1 0.9 1.0 OD2 A:ASP466 3.2 97.1 1.0 C A:GLU468 3.4 92.7 1.0 OD2 A:ASP470 3.5 0.2 1.0 CG A:ASP462 3.6 100.0 1.0 ND2 A:ASN464 3.8 0.1 1.0 CB A:ASN464 3.9 0.5 1.0 CG A:GLU473 4.1 94.3 1.0 N A:ASN464 4.1 0.0 1.0 N A:ASP466 4.2 0.2 1.0 N A:GLU468 4.3 93.6 1.0 CB A:ASP466 4.3 99.8 1.0 N A:VAL469 4.3 91.0 1.0 OD1 A:ASP462 4.3 0.8 1.0 N A:ASN465 4.3 0.9 1.0 CA A:VAL469 4.3 89.9 1.0 CA A:GLU468 4.4 92.7 1.0 N A:ASP470 4.4 94.9 1.0 CA A:ASN464 4.4 0.2 1.0 CG A:ASP470 4.5 0.8 1.0 CA A:ASP462 4.5 98.8 1.0 CB A:ASP462 4.6 99.0 1.0 CA A:ASP466 4.7 99.4 1.0 N A:ARG463 4.8 0.3 1.0 C A:ASP462 4.8 0.2 1.0 C A:VAL469 4.8 92.5 1.0 C A:ASN464 4.8 0.1 1.0 N A:GLY467 4.9 92.4 1.0 CB A:GLU468 5.0 91.2 1.0

Calcium binding site 5 out of 8 in the Calcium-Dependent Protein Kinase From Eimeria Tenella


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Calcium-Dependent Protein Kinase From Eimeria Tenella within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca501 b:54.0 occ:1.00 OD2 B:ASP349 2.3 61.5 1.0 OE1 B:GLU356 2.3 52.3 1.0 O B:GLN351 2.3 56.9 1.0 OD1 B:ASN347 2.3 61.0 1.0 OD1 B:ASP345 2.3 51.8 1.0 CD B:GLU356 3.0 53.5 1.0 CG B:ASN347 3.1 63.0 1.0 CG B:ASP349 3.1 64.2 1.0 OE2 B:GLU356 3.2 55.6 1.0 ND2 B:ASN347 3.3 63.2 1.0 OD1 B:ASP349 3.3 63.6 1.0 C B:GLN351 3.4 56.0 1.0 CG B:ASP345 3.5 54.1 1.0 N B:GLN351 3.9 59.2 1.0 OD2 B:ASP345 4.0 56.2 1.0 CA B:GLN351 4.1 59.5 1.0 CB B:GLN351 4.2 65.6 1.0 CG B:GLU356 4.3 52.3 1.0 OD2 B:ASP353 4.3 55.9 1.0 N B:LEU352 4.4 50.8 1.0 N B:ASP349 4.5 65.2 1.0 CB B:ASP349 4.5 66.3 1.0 CB B:ASN347 4.5 65.2 1.0 CA B:LEU352 4.5 49.1 1.0 CB B:ASP345 4.6 53.4 1.0 N B:ASP353 4.6 49.7 1.0 N B:ASN347 4.8 61.1 1.0 CA B:ASP345 4.8 55.1 1.0 N B:GLY350 4.8 59.9 1.0 C B:LEU352 4.8 49.8 1.0 CA B:ASP349 4.9 65.9 1.0 N B:GLY348 4.9 67.5 1.0 CG B:ASP353 4.9 53.5 1.0 C B:ASN347 4.9 66.8 1.0 C B:ASP349 5.0 63.2 1.0 CA B:ASN347 5.0 65.0 1.0

Calcium binding site 6 out of 8 in the Calcium-Dependent Protein Kinase From Eimeria Tenella


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Calcium-Dependent Protein Kinase From Eimeria Tenella within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca502 b:58.8 occ:1.00 OE2 B:GLU400 2.3 57.2 1.0 O B:PHE398 2.3 52.6 1.0 OD1 B:ASP392 2.3 52.0 1.0 OD1 B:ASP394 2.3 55.0 1.0 OD1 B:ASN396 2.3 59.3 1.0 OE2 B:GLU403 2.3 57.1 1.0 OE1 B:GLU403 2.3 56.8 1.0 CD B:GLU403 2.7 53.4 1.0 CG B:ASN396 3.4 58.9 1.0 CG B:ASP392 3.4 50.4 1.0 CG B:ASP394 3.4 54.1 1.0 C B:PHE398 3.4 51.1 1.0 CD B:GLU400 3.5 58.5 1.0 ND2 B:ASN396 3.8 62.8 1.0 N B:ASP394 4.0 51.9 1.0 OE1 B:GLU400 4.0 59.4 1.0 OD2 B:ASP394 4.1 55.4 1.0 N B:GLU400 4.1 45.6 1.0 OD2 B:ASP392 4.1 49.9 1.0 CA B:ASP392 4.2 50.5 1.0 CG B:GLU403 4.2 49.2 1.0 N B:PHE398 4.3 51.5 1.0 CA B:ILE399 4.3 44.2 1.0 CB B:ASP392 4.3 51.0 1.0 N B:ILE399 4.3 48.3 1.0 C B:ASP392 4.3 51.1 1.0 CA B:PHE398 4.4 53.2 1.0 N B:PHE393 4.4 51.6 1.0 CB B:ASP394 4.4 53.4 1.0 N B:LYS395 4.5 50.8 1.0 CA B:ASP394 4.5 51.7 1.0 N B:ASN396 4.5 54.6 1.0 CG B:GLU400 4.6 57.4 1.0 CB B:ASN396 4.6 57.8 1.0 CB B:GLU400 4.6 52.2 1.0 C B:ILE399 4.7 44.6 1.0 C B:ASP394 4.7 51.0 1.0 CB B:PHE398 4.7 56.2 1.0 O B:ASP392 4.9 51.6 1.0

Calcium binding site 7 out of 8 in the Calcium-Dependent Protein Kinase From Eimeria Tenella


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Calcium-Dependent Protein Kinase From Eimeria Tenella within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca503 b:91.7 occ:1.00 OD2 B:ASP430 2.3 89.5 1.0 OG B:SER432 2.3 87.6 1.0 OD1 B:ASP430 2.3 93.5 1.0 OE2 B:GLU439 2.4 87.5 1.0 OE1 B:GLU439 2.4 90.3 1.0 O B:LYS434 2.5 72.7 1.0 CG B:ASP430 2.6 89.5 1.0 CD B:GLU439 2.7 83.0 1.0 OD1 B:ASP428 2.8 80.0 1.0 CB B:SER432 3.6 86.3 1.0 C B:LYS434 3.7 76.7 1.0 CB B:ASP430 4.0 88.7 1.0 CG B:ASP428 4.0 81.0 1.0 CG B:GLU439 4.1 76.0 1.0 N B:SER432 4.3 81.7 1.0 N B:SER436 4.4 66.8 1.0 N B:ASP430 4.5 85.0 1.0 CA B:SER432 4.5 84.6 1.0 N B:LYS434 4.6 81.2 1.0 N B:ILE435 4.6 73.2 1.0 OG B:SER436 4.6 63.2 1.0 CA B:LYS434 4.6 81.5 1.0 CA B:ILE435 4.6 69.2 1.0 CA B:ASP430 4.7 88.2 1.0 CA B:ASP428 4.8 78.5 1.0 CB B:SER436 4.8 66.2 1.0 OD2 B:ASP428 4.9 81.8 1.0 CB B:ASP428 4.9 79.1 1.0 C B:ASP428 4.9 78.3 1.0 C B:ILE435 5.0 66.6 1.0 C B:ASP430 5.0 91.6 1.0 N B:ALA429 5.0 79.8 1.0

Calcium binding site 8 out of 8 in the Calcium-Dependent Protein Kinase From Eimeria Tenella


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Calcium-Dependent Protein Kinase From Eimeria Tenella within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca504 b:84.1 occ:1.00 OD1 B:ASN464 2.3 96.9 1.0 OD1 B:ASP466 2.3 84.6 1.0 OE1 B:GLU473 2.3 83.5 1.0 O B:GLU468 2.3 77.2 1.0 OD2 B:ASP462 2.3 81.1 1.0 OE2 B:GLU473 2.3 81.1 1.0 CD B:GLU473 2.6 79.9 1.0 CG B:ASP466 3.0 86.5 1.0 CG B:ASN464 3.1 97.8 1.0 OD2 B:ASP466 3.2 85.9 1.0 ND2 B:ASN464 3.3 99.2 1.0 C B:GLU468 3.4 74.3 1.0 OD2 B:ASP470 3.5 87.5 1.0 CG B:ASP462 3.6 81.7 1.0 CG B:GLU473 4.1 77.3 1.0 N B:ASP466 4.2 89.9 1.0 N B:VAL469 4.3 71.4 1.0 N B:GLU468 4.3 79.2 1.0 CB B:ASP466 4.3 89.8 1.0 CA B:VAL469 4.3 71.4 1.0 OD1 B:ASP462 4.3 80.8 1.0 N B:ASP470 4.4 77.6 1.0 CA B:GLU468 4.4 75.6 1.0 N B:ASN465 4.5 88.8 1.0 CG B:ASP470 4.5 88.5 1.0 CA B:ASP462 4.5 81.3 1.0 CB B:ASN464 4.6 98.4 1.0 CB B:ASP462 4.6 81.1 1.0 N B:ASN464 4.7 93.6 1.0 CA B:ASP466 4.7 90.4 1.0 C B:VAL469 4.8 73.5 1.0 CB B:GLU468 5.0 75.3 1.0 N B:GLY467 5.0 88.3 1.0 C B:ASP462 5.0 85.7 1.0 CA B:ASN464 5.0 96.4 1.0

K.K.Ojo, R.Vidadala, D.J.Maly, W.C.Van Voorhis, E.A.Merritt. Cdpk Is A Druggable Target in the Apicomplexan Parasite Eimeria To Be Published.