Calcium in PDB 4yw7: Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
Protein crystallography data
The structure of Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca, PDB code: 4yw7
was solved by
R.Visini,
X.Jin,
G.Michaud,
M.Bergmann,
E.Gillon,
A.Imberty,
A.Stocker,
T.Darbre,
R.Pieters,
J.-L.Reymond,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
16.03 /
1.82
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
49.570,
89.310,
100.010,
90.04,
89.83,
79.61
|
|
R / Rfree (%)
|
17.9 /
22.1
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
(pdb code 4yw7). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca, PDB code: 4yw7:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 4yw7
Go back to
Calcium Binding Sites List in 4yw7
Calcium binding site 1 out
of 16 in the Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca900
b:15.6
occ:1.00
|
O
|
A:THR104
|
2.3
|
14.5
|
1.0
|
|
O
|
A:TYR36
|
2.3
|
16.8
|
1.0
|
|
OD1
|
A:ASN108
|
2.4
|
14.9
|
1.0
|
|
O4
|
A:GAL901
|
2.4
|
17.6
|
1.0
|
|
OD1
|
A:ASN107
|
2.4
|
18.0
|
1.0
|
|
O3
|
A:GAL901
|
2.4
|
15.5
|
1.0
|
|
OD2
|
A:ASP100
|
2.5
|
14.8
|
1.0
|
|
C4
|
A:GAL901
|
3.3
|
19.0
|
1.0
|
|
C3
|
A:GAL901
|
3.3
|
17.1
|
1.0
|
|
C
|
A:TYR36
|
3.3
|
17.4
|
1.0
|
|
C
|
A:THR104
|
3.4
|
17.2
|
1.0
|
|
CG
|
A:ASN108
|
3.5
|
13.0
|
1.0
|
|
OG1
|
A:THR104
|
3.5
|
19.2
|
1.0
|
|
CG
|
A:ASN107
|
3.5
|
19.1
|
1.0
|
|
CG
|
A:ASP100
|
3.5
|
15.5
|
1.0
|
|
CB
|
A:THR104
|
3.9
|
21.8
|
1.0
|
|
OD1
|
A:ASP100
|
3.9
|
14.7
|
1.0
|
|
ND2
|
A:ASN107
|
3.9
|
19.3
|
1.0
|
|
ND2
|
A:ASN108
|
3.9
|
12.7
|
1.0
|
|
C2
|
A:GAL901
|
3.9
|
16.9
|
1.0
|
|
CA
|
A:TYR36
|
4.0
|
14.7
|
1.0
|
|
CB
|
A:TYR36
|
4.2
|
14.4
|
1.0
|
|
CA
|
A:THR104
|
4.3
|
19.1
|
1.0
|
|
N
|
A:TYR105
|
4.3
|
16.1
|
1.0
|
|
N
|
A:GLY37
|
4.4
|
17.2
|
1.0
|
|
CA
|
A:TYR105
|
4.4
|
15.7
|
1.0
|
|
N
|
A:ASN108
|
4.6
|
19.1
|
1.0
|
|
O2
|
A:GAL901
|
4.6
|
19.2
|
1.0
|
|
CA
|
A:GLY37
|
4.6
|
15.2
|
1.0
|
|
C5
|
A:GAL901
|
4.7
|
18.8
|
1.0
|
|
C
|
A:ASN107
|
4.7
|
18.2
|
1.0
|
|
C
|
A:TYR105
|
4.7
|
16.5
|
1.0
|
|
CB
|
A:ASN108
|
4.8
|
14.3
|
1.0
|
|
N
|
A:ASN107
|
4.8
|
19.1
|
1.0
|
|
CB
|
A:ASN107
|
4.8
|
18.0
|
1.0
|
|
CB
|
A:ASP100
|
4.9
|
10.9
|
1.0
|
|
CA
|
A:ASN108
|
4.9
|
11.9
|
1.0
|
|
O
|
A:TYR105
|
5.0
|
16.3
|
1.0
|
|
Calcium binding site 2 out
of 16 in 4yw7
Go back to
Calcium Binding Sites List in 4yw7
Calcium binding site 2 out
of 16 in the Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca201
b:19.0
occ:1.00
|
O
|
B:THR104
|
2.3
|
19.2
|
1.0
|
|
OD1
|
B:ASN108
|
2.4
|
15.4
|
1.0
|
|
O
|
B:TYR36
|
2.4
|
17.6
|
1.0
|
|
OD1
|
B:ASN107
|
2.5
|
18.9
|
1.0
|
|
OD2
|
B:ASP100
|
2.5
|
14.6
|
1.0
|
|
O4
|
B:GAL202
|
2.5
|
18.0
|
1.0
|
|
O3
|
B:GAL202
|
2.5
|
16.5
|
1.0
|
|
C
|
B:TYR36
|
3.4
|
16.5
|
1.0
|
|
C4
|
B:GAL202
|
3.4
|
16.1
|
1.0
|
|
C3
|
B:GAL202
|
3.4
|
18.9
|
1.0
|
|
CG
|
B:ASN108
|
3.4
|
19.4
|
1.0
|
|
C
|
B:THR104
|
3.5
|
21.4
|
1.0
|
|
CG
|
B:ASN107
|
3.5
|
20.3
|
1.0
|
|
CG
|
B:ASP100
|
3.5
|
16.9
|
1.0
|
|
OG1
|
B:THR104
|
3.6
|
20.1
|
1.0
|
|
ND2
|
B:ASN108
|
3.8
|
15.8
|
1.0
|
|
OD1
|
B:ASP100
|
3.9
|
16.1
|
1.0
|
|
ND2
|
B:ASN107
|
3.9
|
20.1
|
1.0
|
|
CA
|
B:TYR36
|
4.0
|
18.6
|
1.0
|
|
CB
|
B:THR104
|
4.0
|
20.5
|
1.0
|
|
C2
|
B:GAL202
|
4.0
|
19.0
|
1.0
|
|
CB
|
B:TYR36
|
4.1
|
17.5
|
1.0
|
|
CA
|
B:THR104
|
4.3
|
19.6
|
1.0
|
|
N
|
B:TYR105
|
4.3
|
20.9
|
1.0
|
|
CA
|
B:TYR105
|
4.4
|
19.2
|
1.0
|
|
N
|
B:GLY37
|
4.4
|
17.5
|
1.0
|
|
N
|
B:ASN108
|
4.6
|
16.6
|
1.0
|
|
O2
|
B:GAL202
|
4.7
|
22.1
|
1.0
|
|
C
|
B:TYR105
|
4.7
|
23.3
|
1.0
|
|
N
|
B:ASN107
|
4.7
|
18.6
|
1.0
|
|
CA
|
B:GLY37
|
4.7
|
17.4
|
1.0
|
|
CB
|
B:ASN108
|
4.8
|
18.5
|
1.0
|
|
O
|
B:HOH375
|
4.8
|
21.7
|
1.0
|
|
C
|
B:ASN107
|
4.8
|
17.7
|
1.0
|
|
C5
|
B:GAL202
|
4.8
|
15.1
|
1.0
|
|
CB
|
B:ASP100
|
4.8
|
15.2
|
1.0
|
|
CB
|
B:ASN107
|
4.8
|
17.4
|
1.0
|
|
CA
|
B:ASN108
|
4.9
|
19.6
|
1.0
|
|
Calcium binding site 3 out
of 16 in 4yw7
Go back to
Calcium Binding Sites List in 4yw7
Calcium binding site 3 out
of 16 in the Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca202
b:15.0
occ:1.00
|
O
|
C:TYR36
|
2.3
|
16.1
|
1.0
|
|
O
|
C:THR104
|
2.3
|
17.5
|
1.0
|
|
O58
|
C:4J0201
|
2.4
|
13.2
|
1.0
|
|
OD1
|
C:ASN108
|
2.4
|
16.5
|
1.0
|
|
OD1
|
C:ASN107
|
2.5
|
14.4
|
1.0
|
|
O57
|
C:4J0201
|
2.5
|
14.5
|
1.0
|
|
OD2
|
C:ASP100
|
2.5
|
11.6
|
1.0
|
|
H58
|
C:4J0201
|
2.6
|
15.9
|
1.0
|
|
H57
|
C:4J0201
|
3.1
|
17.4
|
1.0
|
|
C55
|
C:4J0201
|
3.3
|
20.3
|
1.0
|
|
C59
|
C:4J0201
|
3.3
|
17.0
|
1.0
|
|
H62
|
C:4J0201
|
3.4
|
19.2
|
1.0
|
|
C
|
C:TYR36
|
3.4
|
13.4
|
1.0
|
|
C
|
C:THR104
|
3.4
|
15.9
|
1.0
|
|
H55
|
C:4J0201
|
3.5
|
24.4
|
1.0
|
|
CG
|
C:ASN108
|
3.5
|
13.7
|
1.0
|
|
CG
|
C:ASN107
|
3.5
|
14.1
|
1.0
|
|
CG
|
C:ASP100
|
3.6
|
14.5
|
1.0
|
|
OG1
|
C:THR104
|
3.8
|
15.1
|
1.0
|
|
C62
|
C:4J0201
|
3.9
|
16.0
|
1.0
|
|
OD1
|
C:ASP100
|
3.9
|
12.9
|
1.0
|
|
ND2
|
C:ASN107
|
3.9
|
14.1
|
1.0
|
|
CB
|
C:THR104
|
4.0
|
16.6
|
1.0
|
|
ND2
|
C:ASN108
|
4.0
|
10.4
|
1.0
|
|
CA
|
C:TYR36
|
4.0
|
13.0
|
1.0
|
|
CB
|
C:TYR36
|
4.1
|
18.2
|
1.0
|
|
H63
|
C:4J0201
|
4.2
|
18.4
|
1.0
|
|
H59
|
C:4J0201
|
4.2
|
20.4
|
1.0
|
|
N
|
C:TYR105
|
4.3
|
14.6
|
1.0
|
|
CA
|
C:TYR105
|
4.3
|
17.9
|
1.0
|
|
CA
|
C:THR104
|
4.3
|
15.3
|
1.0
|
|
N
|
C:GLY37
|
4.4
|
13.2
|
1.0
|
|
O
|
C:HOH325
|
4.5
|
16.2
|
1.0
|
|
N
|
C:ASN108
|
4.6
|
12.3
|
1.0
|
|
O63
|
C:4J0201
|
4.6
|
15.4
|
1.0
|
|
C
|
C:TYR105
|
4.7
|
15.8
|
1.0
|
|
CA
|
C:GLY37
|
4.7
|
13.8
|
1.0
|
|
C56
|
C:4J0201
|
4.7
|
21.9
|
1.0
|
|
N
|
C:ASN107
|
4.7
|
13.7
|
1.0
|
|
C
|
C:ASN107
|
4.8
|
13.1
|
1.0
|
|
CB
|
C:ASN108
|
4.8
|
15.5
|
1.0
|
|
CB
|
C:ASN107
|
4.8
|
12.5
|
1.0
|
|
CB
|
C:ASP100
|
4.9
|
13.1
|
1.0
|
|
CD2
|
C:TYR36
|
4.9
|
17.5
|
1.0
|
|
CA
|
C:ASN108
|
5.0
|
12.7
|
1.0
|
|
Calcium binding site 4 out
of 16 in 4yw7
Go back to
Calcium Binding Sites List in 4yw7
Calcium binding site 4 out
of 16 in the Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca201
b:17.0
occ:1.00
|
O
|
D:TYR36
|
2.2
|
16.6
|
1.0
|
|
O
|
D:THR104
|
2.4
|
18.4
|
1.0
|
|
O4
|
D:GAL202
|
2.4
|
20.1
|
1.0
|
|
O3
|
D:GAL202
|
2.4
|
18.4
|
1.0
|
|
OD1
|
D:ASN107
|
2.4
|
18.4
|
1.0
|
|
OD2
|
D:ASP100
|
2.5
|
15.0
|
1.0
|
|
OD1
|
D:ASN108
|
2.5
|
17.6
|
1.0
|
|
C4
|
D:GAL202
|
3.3
|
19.3
|
1.0
|
|
C
|
D:TYR36
|
3.3
|
17.6
|
1.0
|
|
C3
|
D:GAL202
|
3.3
|
16.5
|
1.0
|
|
OG1
|
D:THR104
|
3.4
|
17.8
|
1.0
|
|
CG
|
D:ASN107
|
3.5
|
20.8
|
1.0
|
|
C
|
D:THR104
|
3.5
|
17.9
|
1.0
|
|
CG
|
D:ASP100
|
3.5
|
18.5
|
1.0
|
|
CG
|
D:ASN108
|
3.6
|
16.9
|
1.0
|
|
ND2
|
D:ASN107
|
3.8
|
24.8
|
1.0
|
|
OD1
|
D:ASP100
|
3.9
|
18.0
|
1.0
|
|
C2
|
D:GAL202
|
3.9
|
23.3
|
1.0
|
|
CB
|
D:THR104
|
3.9
|
21.6
|
1.0
|
|
CA
|
D:TYR36
|
4.0
|
15.7
|
1.0
|
|
ND2
|
D:ASN108
|
4.1
|
17.8
|
1.0
|
|
CB
|
D:TYR36
|
4.2
|
18.1
|
1.0
|
|
N
|
D:GLY37
|
4.3
|
19.4
|
1.0
|
|
CA
|
D:THR104
|
4.4
|
20.3
|
1.0
|
|
N
|
D:TYR105
|
4.4
|
19.1
|
1.0
|
|
CA
|
D:TYR105
|
4.5
|
20.1
|
1.0
|
|
O2
|
D:GAL202
|
4.5
|
19.8
|
1.0
|
|
CA
|
D:GLY37
|
4.6
|
22.9
|
1.0
|
|
O
|
D:HOH354
|
4.6
|
23.2
|
1.0
|
|
N
|
D:ASN108
|
4.6
|
19.0
|
1.0
|
|
C5
|
D:GAL202
|
4.7
|
20.9
|
1.0
|
|
C
|
D:ASN107
|
4.8
|
19.4
|
1.0
|
|
CB
|
D:ASN107
|
4.8
|
21.1
|
1.0
|
|
C
|
D:TYR105
|
4.8
|
19.5
|
1.0
|
|
CB
|
D:ASP100
|
4.8
|
14.9
|
1.0
|
|
N
|
D:ASN107
|
4.9
|
14.5
|
1.0
|
|
CB
|
D:ASN108
|
4.9
|
15.6
|
1.0
|
|
CA
|
D:ASN108
|
5.0
|
18.9
|
1.0
|
|
Calcium binding site 5 out
of 16 in 4yw7
Go back to
Calcium Binding Sites List in 4yw7
Calcium binding site 5 out
of 16 in the Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca900
b:15.8
occ:1.00
|
O
|
E:THR104
|
2.3
|
15.3
|
1.0
|
|
O
|
E:TYR36
|
2.3
|
15.1
|
1.0
|
|
O3
|
E:GAL901
|
2.3
|
15.3
|
1.0
|
|
OD1
|
E:ASN107
|
2.4
|
16.9
|
1.0
|
|
OD1
|
E:ASN108
|
2.5
|
14.5
|
1.0
|
|
O4
|
E:GAL901
|
2.5
|
19.9
|
1.0
|
|
OD2
|
E:ASP100
|
2.6
|
16.6
|
1.0
|
|
C3
|
E:GAL901
|
3.3
|
20.3
|
1.0
|
|
C4
|
E:GAL901
|
3.3
|
18.4
|
1.0
|
|
C
|
E:TYR36
|
3.3
|
16.9
|
1.0
|
|
C
|
E:THR104
|
3.4
|
19.9
|
1.0
|
|
CG
|
E:ASN107
|
3.5
|
15.1
|
1.0
|
|
OG1
|
E:THR104
|
3.5
|
21.8
|
1.0
|
|
CG
|
E:ASP100
|
3.6
|
16.3
|
1.0
|
|
CG
|
E:ASN108
|
3.6
|
17.5
|
1.0
|
|
OD1
|
E:ASP100
|
3.8
|
15.2
|
1.0
|
|
CB
|
E:THR104
|
3.9
|
17.9
|
1.0
|
|
ND2
|
E:ASN107
|
3.9
|
17.6
|
1.0
|
|
C2
|
E:GAL901
|
3.9
|
23.3
|
1.0
|
|
CA
|
E:TYR36
|
3.9
|
18.0
|
1.0
|
|
ND2
|
E:ASN108
|
4.1
|
16.1
|
1.0
|
|
CB
|
E:TYR36
|
4.1
|
18.6
|
1.0
|
|
CA
|
E:THR104
|
4.3
|
18.2
|
1.0
|
|
N
|
E:TYR105
|
4.3
|
18.8
|
1.0
|
|
CA
|
E:TYR105
|
4.4
|
21.7
|
1.0
|
|
N
|
E:GLY37
|
4.4
|
17.2
|
1.0
|
|
O2
|
E:GAL901
|
4.5
|
23.2
|
1.0
|
|
N
|
E:ASN108
|
4.5
|
15.2
|
1.0
|
|
O
|
E:HOH1069
|
4.7
|
21.8
|
1.0
|
|
CA
|
E:GLY37
|
4.7
|
18.1
|
1.0
|
|
C5
|
E:GAL901
|
4.7
|
18.9
|
1.0
|
|
C
|
E:TYR105
|
4.8
|
17.5
|
1.0
|
|
C
|
E:ASN107
|
4.8
|
17.7
|
1.0
|
|
N
|
E:ASN107
|
4.8
|
15.9
|
1.0
|
|
CB
|
E:ASN107
|
4.8
|
18.2
|
1.0
|
|
CB
|
E:ASN108
|
4.8
|
14.2
|
1.0
|
|
CB
|
E:ASP100
|
4.9
|
14.9
|
1.0
|
|
CA
|
E:ASN108
|
5.0
|
15.8
|
1.0
|
|
Calcium binding site 6 out
of 16 in 4yw7
Go back to
Calcium Binding Sites List in 4yw7
Calcium binding site 6 out
of 16 in the Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca900
b:14.8
occ:1.00
|
O
|
F:THR104
|
2.3
|
14.8
|
1.0
|
|
O
|
F:TYR36
|
2.3
|
15.6
|
1.0
|
|
O4
|
F:GAL901
|
2.4
|
18.6
|
1.0
|
|
OD1
|
F:ASN107
|
2.4
|
18.2
|
1.0
|
|
OD1
|
F:ASN108
|
2.4
|
15.8
|
1.0
|
|
O3
|
F:GAL901
|
2.4
|
15.5
|
1.0
|
|
OD2
|
F:ASP100
|
2.5
|
13.8
|
1.0
|
|
C4
|
F:GAL901
|
3.3
|
21.7
|
1.0
|
|
C
|
F:TYR36
|
3.3
|
15.7
|
1.0
|
|
C3
|
F:GAL901
|
3.3
|
15.8
|
1.0
|
|
C
|
F:THR104
|
3.4
|
19.7
|
1.0
|
|
CG
|
F:ASN107
|
3.4
|
20.9
|
1.0
|
|
CG
|
F:ASN108
|
3.5
|
15.2
|
1.0
|
|
OG1
|
F:THR104
|
3.5
|
16.0
|
1.0
|
|
CG
|
F:ASP100
|
3.5
|
17.4
|
1.0
|
|
ND2
|
F:ASN107
|
3.8
|
17.3
|
1.0
|
|
OD1
|
F:ASP100
|
3.8
|
15.6
|
1.0
|
|
CB
|
F:THR104
|
3.9
|
23.2
|
1.0
|
|
C2
|
F:GAL901
|
3.9
|
20.9
|
1.0
|
|
ND2
|
F:ASN108
|
3.9
|
14.3
|
1.0
|
|
CA
|
F:TYR36
|
4.0
|
15.4
|
1.0
|
|
CB
|
F:TYR36
|
4.2
|
14.4
|
1.0
|
|
CA
|
F:THR104
|
4.3
|
19.4
|
1.0
|
|
N
|
F:TYR105
|
4.3
|
16.5
|
1.0
|
|
N
|
F:GLY37
|
4.3
|
14.6
|
1.0
|
|
CA
|
F:TYR105
|
4.3
|
16.1
|
1.0
|
|
N
|
F:ASN108
|
4.6
|
21.6
|
1.0
|
|
O2
|
F:GAL901
|
4.6
|
21.1
|
1.0
|
|
CA
|
F:GLY37
|
4.6
|
14.1
|
1.0
|
|
C5
|
F:GAL901
|
4.7
|
19.4
|
1.0
|
|
C
|
F:ASN107
|
4.7
|
16.6
|
1.0
|
|
C
|
F:TYR105
|
4.8
|
18.0
|
1.0
|
|
CB
|
F:ASN107
|
4.8
|
19.0
|
1.0
|
|
N
|
F:ASN107
|
4.8
|
16.1
|
1.0
|
|
CB
|
F:ASN108
|
4.8
|
13.8
|
1.0
|
|
CB
|
F:ASP100
|
4.9
|
11.9
|
1.0
|
|
CA
|
F:ASN108
|
5.0
|
13.3
|
1.0
|
|
Calcium binding site 7 out
of 16 in 4yw7
Go back to
Calcium Binding Sites List in 4yw7
Calcium binding site 7 out
of 16 in the Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca900
b:16.1
occ:1.00
|
O
|
G:TYR36
|
2.3
|
18.3
|
1.0
|
|
O
|
G:THR104
|
2.4
|
15.4
|
1.0
|
|
OD1
|
G:ASN108
|
2.4
|
15.7
|
1.0
|
|
O3
|
G:GAL901
|
2.4
|
16.4
|
1.0
|
|
O4
|
G:GAL901
|
2.4
|
15.5
|
1.0
|
|
OD2
|
G:ASP100
|
2.5
|
13.7
|
1.0
|
|
OD1
|
G:ASN107
|
2.6
|
16.4
|
1.0
|
|
C4
|
G:GAL901
|
3.3
|
18.3
|
1.0
|
|
C
|
G:TYR36
|
3.3
|
17.0
|
1.0
|
|
C3
|
G:GAL901
|
3.3
|
17.7
|
1.0
|
|
C
|
G:THR104
|
3.5
|
15.6
|
1.0
|
|
CG
|
G:ASN108
|
3.5
|
15.2
|
1.0
|
|
CG
|
G:ASP100
|
3.5
|
14.0
|
1.0
|
|
OG1
|
G:THR104
|
3.5
|
16.4
|
1.0
|
|
CG
|
G:ASN107
|
3.6
|
15.3
|
1.0
|
|
OD1
|
G:ASP100
|
3.9
|
13.0
|
1.0
|
|
CA
|
G:TYR36
|
3.9
|
14.1
|
1.0
|
|
ND2
|
G:ASN108
|
4.0
|
13.7
|
1.0
|
|
C2
|
G:GAL901
|
4.0
|
18.6
|
1.0
|
|
ND2
|
G:ASN107
|
4.0
|
11.8
|
1.0
|
|
CB
|
G:THR104
|
4.1
|
15.9
|
1.0
|
|
CB
|
G:TYR36
|
4.1
|
16.9
|
1.0
|
|
CA
|
G:TYR105
|
4.2
|
15.2
|
1.0
|
|
N
|
G:TYR105
|
4.3
|
14.4
|
1.0
|
|
N
|
G:GLY37
|
4.4
|
16.2
|
1.0
|
|
CA
|
G:THR104
|
4.4
|
16.9
|
1.0
|
|
N
|
G:ASN108
|
4.5
|
14.1
|
1.0
|
|
C
|
G:TYR105
|
4.6
|
14.4
|
1.0
|
|
O2
|
G:GAL901
|
4.6
|
21.0
|
1.0
|
|
O
|
G:HOH1056
|
4.7
|
15.8
|
1.0
|
|
C5
|
G:GAL901
|
4.7
|
20.0
|
1.0
|
|
CA
|
G:GLY37
|
4.7
|
18.2
|
1.0
|
|
N
|
G:ASN107
|
4.7
|
12.1
|
1.0
|
|
C
|
G:ASN107
|
4.8
|
17.0
|
1.0
|
|
CB
|
G:ASN108
|
4.8
|
14.9
|
1.0
|
|
CB
|
G:ASP100
|
4.8
|
12.9
|
1.0
|
|
CD2
|
G:TYR36
|
4.9
|
17.6
|
1.0
|
|
CB
|
G:ASN107
|
4.9
|
15.7
|
1.0
|
|
CA
|
G:ASN108
|
4.9
|
15.0
|
1.0
|
|
O
|
G:TYR105
|
5.0
|
13.6
|
1.0
|
|
Calcium binding site 8 out
of 16 in 4yw7
Go back to
Calcium Binding Sites List in 4yw7
Calcium binding site 8 out
of 16 in the Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca900
b:15.3
occ:1.00
|
O
|
H:THR104
|
2.3
|
13.3
|
1.0
|
|
O
|
H:TYR36
|
2.3
|
15.5
|
1.0
|
|
O3
|
H:GAL901
|
2.4
|
14.7
|
1.0
|
|
OD1
|
H:ASN108
|
2.4
|
14.4
|
1.0
|
|
OD1
|
H:ASN107
|
2.5
|
17.5
|
1.0
|
|
OD2
|
H:ASP100
|
2.5
|
10.6
|
1.0
|
|
O4
|
H:GAL901
|
2.5
|
14.8
|
1.0
|
|
C
|
H:TYR36
|
3.3
|
15.9
|
1.0
|
|
C4
|
H:GAL901
|
3.3
|
16.8
|
1.0
|
|
C3
|
H:GAL901
|
3.4
|
17.2
|
1.0
|
|
C
|
H:THR104
|
3.4
|
17.5
|
1.0
|
|
CG
|
H:ASN108
|
3.5
|
15.6
|
1.0
|
|
CG
|
H:ASN107
|
3.5
|
17.5
|
1.0
|
|
CG
|
H:ASP100
|
3.6
|
16.9
|
1.0
|
|
OG1
|
H:THR104
|
3.7
|
14.0
|
1.0
|
|
CA
|
H:TYR36
|
3.9
|
13.2
|
1.0
|
|
OD1
|
H:ASP100
|
3.9
|
13.7
|
1.0
|
|
ND2
|
H:ASN107
|
4.0
|
17.3
|
1.0
|
|
ND2
|
H:ASN108
|
4.0
|
13.2
|
1.0
|
|
C2
|
H:GAL901
|
4.0
|
17.0
|
1.0
|
|
CB
|
H:TYR36
|
4.1
|
15.2
|
1.0
|
|
CB
|
H:THR104
|
4.1
|
15.8
|
1.0
|
|
CA
|
H:TYR105
|
4.3
|
16.1
|
1.0
|
|
N
|
H:TYR105
|
4.3
|
14.3
|
1.0
|
|
N
|
H:GLY37
|
4.4
|
17.8
|
1.0
|
|
CA
|
H:THR104
|
4.4
|
15.2
|
1.0
|
|
N
|
H:ASN108
|
4.5
|
16.9
|
1.0
|
|
O2
|
H:GAL901
|
4.6
|
18.5
|
1.0
|
|
C
|
H:TYR105
|
4.6
|
13.5
|
1.0
|
|
CA
|
H:GLY37
|
4.7
|
19.4
|
1.0
|
|
N
|
H:ASN107
|
4.7
|
14.1
|
1.0
|
|
O
|
H:HOH1065
|
4.7
|
16.7
|
1.0
|
|
C
|
H:ASN107
|
4.7
|
17.6
|
1.0
|
|
C5
|
H:GAL901
|
4.7
|
16.6
|
1.0
|
|
CB
|
H:ASN108
|
4.8
|
16.3
|
1.0
|
|
CB
|
H:ASN107
|
4.8
|
15.8
|
1.0
|
|
CB
|
H:ASP100
|
4.9
|
14.7
|
1.0
|
|
O
|
H:HOH1101
|
4.9
|
19.7
|
1.0
|
|
CD2
|
H:TYR36
|
4.9
|
18.5
|
1.0
|
|
CA
|
H:ASN108
|
4.9
|
14.5
|
1.0
|
|
CA
|
H:ASN107
|
5.0
|
14.5
|
1.0
|
|
Calcium binding site 9 out
of 16 in 4yw7
Go back to
Calcium Binding Sites List in 4yw7
Calcium binding site 9 out
of 16 in the Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca201
b:18.0
occ:1.00
|
H73
|
I:4J0202
|
1.6
|
25.4
|
1.0
|
|
O
|
I:TYR36
|
2.3
|
17.0
|
1.0
|
|
O
|
I:THR104
|
2.4
|
19.9
|
1.0
|
|
O77
|
I:4J0202
|
2.4
|
16.8
|
1.0
|
|
OD1
|
I:ASN108
|
2.4
|
18.4
|
1.0
|
|
OD1
|
I:ASN107
|
2.5
|
18.7
|
1.0
|
|
OD2
|
I:ASP100
|
2.6
|
15.6
|
1.0
|
|
O73
|
I:4J0202
|
2.6
|
21.2
|
1.0
|
|
H77
|
I:4J0202
|
3.1
|
20.1
|
1.0
|
|
C
|
I:TYR36
|
3.3
|
18.2
|
1.0
|
|
C71
|
I:4J0202
|
3.3
|
19.2
|
1.0
|
|
C70
|
I:4J0202
|
3.4
|
20.8
|
1.0
|
|
H72
|
I:4J0202
|
3.4
|
28.9
|
1.0
|
|
C
|
I:THR104
|
3.4
|
21.7
|
1.0
|
|
OG1
|
I:THR104
|
3.5
|
22.1
|
1.0
|
|
CG
|
I:ASN107
|
3.5
|
16.1
|
1.0
|
|
CG
|
I:ASN108
|
3.5
|
19.2
|
1.0
|
|
H70
|
I:4J0202
|
3.5
|
25.0
|
1.0
|
|
CG
|
I:ASP100
|
3.6
|
16.3
|
1.0
|
|
CB
|
I:THR104
|
3.8
|
26.4
|
1.0
|
|
OD1
|
I:ASP100
|
3.9
|
15.7
|
1.0
|
|
C72
|
I:4J0202
|
3.9
|
24.1
|
1.0
|
|
ND2
|
I:ASN107
|
3.9
|
16.9
|
1.0
|
|
CA
|
I:TYR36
|
3.9
|
14.3
|
1.0
|
|
ND2
|
I:ASN108
|
4.0
|
16.1
|
1.0
|
|
CB
|
I:TYR36
|
4.1
|
17.5
|
1.0
|
|
H76
|
I:4J0202
|
4.2
|
28.2
|
1.0
|
|
CA
|
I:THR104
|
4.3
|
23.1
|
1.0
|
|
H71
|
I:4J0202
|
4.3
|
23.0
|
1.0
|
|
N
|
I:TYR105
|
4.4
|
17.9
|
1.0
|
|
N
|
I:GLY37
|
4.4
|
18.9
|
1.0
|
|
CA
|
I:TYR105
|
4.5
|
20.5
|
1.0
|
|
O
|
I:HOH1139
|
4.6
|
26.6
|
1.0
|
|
N
|
I:ASN108
|
4.6
|
20.0
|
1.0
|
|
O76
|
I:4J0202
|
4.6
|
23.5
|
1.0
|
|
CA
|
I:GLY37
|
4.7
|
20.1
|
1.0
|
|
C66
|
I:4J0202
|
4.8
|
22.5
|
1.0
|
|
C
|
I:ASN107
|
4.8
|
18.3
|
1.0
|
|
CB
|
I:ASN108
|
4.8
|
17.3
|
1.0
|
|
C
|
I:TYR105
|
4.8
|
21.4
|
1.0
|
|
N
|
I:ASN107
|
4.8
|
19.4
|
1.0
|
|
CB
|
I:ASN107
|
4.8
|
22.0
|
1.0
|
|
CB
|
I:ASP100
|
4.9
|
12.5
|
1.0
|
|
CA
|
I:ASN108
|
4.9
|
17.0
|
1.0
|
|
CD2
|
I:TYR36
|
5.0
|
16.4
|
1.0
|
|
Calcium binding site 10 out
of 16 in 4yw7
Go back to
Calcium Binding Sites List in 4yw7
Calcium binding site 10 out
of 16 in the Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Structural Insight Into Divalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca900
b:19.1
occ:1.00
|
O
|
J:THR104
|
2.4
|
18.5
|
1.0
|
|
O
|
J:TYR36
|
2.4
|
17.1
|
1.0
|
|
OD1
|
J:ASN108
|
2.4
|
17.5
|
1.0
|
|
O4
|
J:GAL901
|
2.4
|
15.7
|
1.0
|
|
OD2
|
J:ASP100
|
2.5
|
16.3
|
1.0
|
|
OD1
|
J:ASN107
|
2.5
|
20.4
|
1.0
|
|
O3
|
J:GAL901
|
2.5
|
16.8
|
1.0
|
|
C4
|
J:GAL901
|
3.3
|
21.1
|
1.0
|
|
C
|
J:TYR36
|
3.4
|
15.4
|
1.0
|
|
C3
|
J:GAL901
|
3.4
|
18.5
|
1.0
|
|
CG
|
J:ASN108
|
3.5
|
19.7
|
1.0
|
|
CG
|
J:ASN107
|
3.5
|
21.2
|
1.0
|
|
CG
|
J:ASP100
|
3.5
|
17.1
|
1.0
|
|
C
|
J:THR104
|
3.5
|
16.7
|
1.0
|
|
OG1
|
J:THR104
|
3.6
|
18.3
|
1.0
|
|
OD1
|
J:ASP100
|
3.8
|
13.7
|
1.0
|
|
ND2
|
J:ASN107
|
3.9
|
18.9
|
1.0
|
|
ND2
|
J:ASN108
|
3.9
|
14.2
|
1.0
|
|
CB
|
J:THR104
|
3.9
|
19.5
|
1.0
|
|
CA
|
J:TYR36
|
3.9
|
15.7
|
1.0
|
|
C2
|
J:GAL901
|
4.0
|
21.6
|
1.0
|
|
CB
|
J:TYR36
|
4.1
|
17.5
|
1.0
|
|
CA
|
J:THR104
|
4.4
|
20.7
|
1.0
|
|
N
|
J:GLY37
|
4.4
|
19.2
|
1.0
|
|
N
|
J:TYR105
|
4.4
|
18.6
|
1.0
|
|
CA
|
J:TYR105
|
4.5
|
22.0
|
1.0
|
|
N
|
J:ASN108
|
4.6
|
17.6
|
1.0
|
|
O
|
J:HOH1073
|
4.6
|
20.8
|
1.0
|
|
O2
|
J:GAL901
|
4.7
|
23.0
|
1.0
|
|
C5
|
J:GAL901
|
4.7
|
14.7
|
1.0
|
|
CA
|
J:GLY37
|
4.7
|
21.4
|
1.0
|
|
CB
|
J:ASN108
|
4.8
|
17.1
|
1.0
|
|
C
|
J:TYR105
|
4.8
|
21.2
|
1.0
|
|
N
|
J:ASN107
|
4.8
|
18.0
|
1.0
|
|
C
|
J:ASN107
|
4.8
|
17.7
|
1.0
|
|
CB
|
J:ASP100
|
4.8
|
14.2
|
1.0
|
|
CB
|
J:ASN107
|
4.8
|
20.7
|
1.0
|
|
CA
|
J:ASN108
|
4.9
|
15.2
|
1.0
|
|
Reference:
R.Visini,
X.Jin,
M.Bergmann,
G.Michaud,
F.Pertici,
O.Fu,
A.Pukin,
T.R.Branson,
D.M.Thies-Weesie,
J.Kemmink,
E.Gillon,
A.Imberty,
A.Stocker,
T.Darbre,
R.J.Pieters,
J.L.Reymond.
Structural Insight Into Multivalent Galactoside Binding to Pseudomonas Aeruginosa Lectin Leca. Acs Chem.Biol. V. 10 2455 2015.
ISSN: ESSN 1554-8937
PubMed: 26295304
DOI: 10.1021/ACSCHEMBIO.5B00302
Page generated: Wed Jul 9 03:22:48 2025
|
