Calcium in PDB 4yzo: Crystal Structure Analysis of Thiolase-Like Protein, ST0096 From Sulfolobus Tokodaii

The structure of Crystal Structure Analysis of Thiolase-Like Protein, ST0096 From Sulfolobus Tokodaii, PDB code: 4yzo was solved by B.Padmanabhan, R.Manjula, S.Yokoyama, Y.Bessho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.99 / 1.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	152.763, 80.863, 137.512, 90.00, 110.80, 90.00
R / Rfree (%)	16.2 / 19.4

The binding sites of Calcium atom in the Crystal Structure Analysis of Thiolase-Like Protein, ST0096 From Sulfolobus Tokodaii (pdb code 4yzo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure Analysis of Thiolase-Like Protein, ST0096 From Sulfolobus Tokodaii, PDB code: 4yzo:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure Analysis of Thiolase-Like Protein, ST0096 From Sulfolobus Tokodaii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure Analysis of Thiolase-Like Protein, ST0096 From Sulfolobus Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca404 b:26.4 occ:1.00 O C:HOH536 2.5 31.4 1.0 N C:ASN211 3.1 13.9 1.0 O C:HOH771 3.1 28.1 1.0 N C:VAL2 3.4 12.6 1.0 CA C:ARG210 3.6 12.8 1.0 CB C:ARG210 3.7 11.6 1.0 CG C:ASN211 3.8 17.5 1.0 CG1 C:VAL2 3.8 12.2 1.0 CG C:ARG210 3.8 11.5 1.0 CA C:VAL2 3.9 12.2 1.0 C C:ARG210 3.9 13.4 1.0 OD1 C:ASN211 3.9 16.0 1.0 CB C:ASN211 4.0 15.8 1.0 CA C:ASN211 4.1 15.8 1.0 ND2 C:ASN211 4.3 21.1 1.0 CG C:GLU91 4.4 15.9 1.0 CB C:VAL2 4.5 11.9 1.0 CD C:ARG210 4.5 11.9 1.0 OE2 C:GLU91 4.7 24.2 1.0 N C:ARG210 5.0 12.5 1.0

Calcium binding site 2 out of 2 in the Crystal Structure Analysis of Thiolase-Like Protein, ST0096 From Sulfolobus Tokodaii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure Analysis of Thiolase-Like Protein, ST0096 From Sulfolobus Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca402 b:39.3 occ:1.00 N D:GLY359 3.1 18.0 1.0 OG D:SER76 3.1 16.0 1.0 N D:SER76 3.2 15.1 1.0 OG1 D:THR75 3.2 18.3 1.0 O D:HOH586 3.3 39.6 1.0 CB D:SER76 3.4 16.4 1.0 CB D:THR75 3.5 17.3 1.0 CA D:GLY359 3.7 18.9 1.0 CA D:SER76 3.9 15.5 1.0 C D:ALA358 4.1 18.6 1.0 CA D:ALA358 4.2 16.6 1.0 C D:THR75 4.3 16.1 1.0 O D:HOH592 4.3 20.3 1.0 CD1 D:LEU131 4.3 31.3 1.0 CA D:THR75 4.5 15.9 1.0 CG2 D:THR75 4.7 17.3 1.0 O D:HOH733 4.7 19.9 1.0 O D:HOH748 4.8 25.3 1.0 C D:GLY359 4.9 19.0 1.0 CB D:ALA358 4.9 16.9 1.0 O D:MSE357 4.9 16.8 1.0

B.Padmanabhan, R.Manjula, S.Yokoyama, Y.Bessho. Crystal Structure Analysis of Thiolase-Like Protein, ST0096 From Sulfolobus Tokodaii To Be Published.