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Calcium in PDB 4z7o: Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide

Protein crystallography data

The structure of Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide, PDB code: 4z7o was solved by F.Y.Lin, J.Zhu, T.A.Springer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.03 / 2.85
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 259.918, 144.524, 104.650, 90.00, 90.00, 90.00
R / Rfree (%) 22.3 / 25.7

Other elements in 4z7o:

The structure of Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide also contains other interesting chemical elements:

Manganese (Mn) 6 atoms
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide (pdb code 4z7o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide, PDB code: 4z7o:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 4z7o

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Calcium binding site 1 out of 8 in the Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:77.9
occ:1.00
OD1 A:ASP245 2.3 78.0 1.0
O A:THR250 2.3 93.2 1.0
OG1 A:THR250 2.3 81.3 1.0
OE2 A:GLU243 2.3 81.5 1.0
O A:ASP247 2.3 80.9 1.0
OE1 A:GLU243 2.3 80.9 1.0
OE1 A:GLU252 2.4 86.8 1.0
OE2 A:GLU252 2.4 78.3 1.0
CD A:GLU243 2.6 80.0 1.0
CD A:GLU252 2.7 81.3 1.0
C A:THR250 3.0 89.8 1.0
CG A:ASP245 3.2 78.6 1.0
OD2 A:ASP245 3.3 79.2 1.0
CB A:THR250 3.4 88.9 1.0
H A:THR250 3.5 0.1 1.0
C A:ASP247 3.6 83.6 1.0
CA A:THR250 3.6 92.7 1.0
HB A:THR250 3.7 0.7 1.0
HA A:THR251 3.7 91.4 1.0
HB3 A:ASP247 3.8 0.1 1.0
HA A:GLU243 3.8 92.6 1.0
N A:THR251 3.9 79.9 1.0
N A:THR250 3.9 96.7 1.0
H A:ASP245 3.9 92.6 1.0
HA A:LEU248 4.0 99.8 1.0
CG A:GLU243 4.1 78.2 1.0
H A:GLU252 4.2 82.4 1.0
CG A:GLU252 4.2 77.6 1.0
H A:PHE244 4.2 87.6 1.0
CA A:THR251 4.2 76.2 1.0
H A:ASP247 4.4 0.0 1.0
CA A:ASP247 4.4 92.2 1.0
N A:GLU252 4.5 68.7 1.0
N A:ASP247 4.5 88.3 1.0
HG3 A:GLU243 4.5 93.8 1.0
HA A:THR250 4.5 0.2 1.0
CB A:ASP247 4.5 0.1 1.0
O A:HOH719 4.5 72.5 1.0
N A:LEU248 4.5 84.8 1.0
CB A:ASP245 4.5 78.9 1.0
H A:THR251 4.6 95.9 1.0
HG3 A:GLU252 4.6 93.1 1.0
C A:THR251 4.6 73.7 1.0
HG2 A:GLU252 4.6 93.1 1.0
CA A:LEU248 4.6 83.2 1.0
CA A:GLU243 4.6 77.2 1.0
HG2 A:GLU243 4.6 93.8 1.0
N A:ASP245 4.7 77.1 1.0
CG2 A:THR250 4.7 94.5 1.0
HB2 A:GLU243 4.7 90.2 1.0
HG23 A:THR250 4.8 0.3 1.0
CB A:GLU243 4.8 75.2 1.0
C A:LEU248 4.8 82.4 1.0
HB3 A:ASP245 4.8 94.7 1.0
N A:PHE244 4.9 73.0 1.0
HB2 A:GLU252 4.9 86.9 1.0
H A:GLY246 4.9 98.7 1.0
HG21 A:THR250 4.9 0.3 1.0

Calcium binding site 2 out of 8 in 4z7o

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Calcium binding site 2 out of 8 in the Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca503

b:80.7
occ:1.00
O A:ARG303 2.2 66.0 1.0
O A:HOH611 2.2 79.5 1.0
OD1 A:ASN299 2.3 67.9 1.0
OD2 A:ASP305 2.3 67.0 1.0
OD1 A:ASP297 2.4 68.1 1.0
OD1 A:ASP305 2.4 66.0 1.0
OD1 A:ASP301 2.4 72.8 1.0
CG A:ASP305 2.6 59.9 1.0
CG A:ASN299 3.3 69.3 1.0
HD21 A:ASN299 3.3 95.2 1.0
CG A:ASP301 3.3 75.9 1.0
HB2 A:ARG303 3.3 97.4 1.0
C A:ARG303 3.4 67.5 1.0
HA A:ASP297 3.4 79.0 1.0
H A:ASN299 3.5 78.3 1.0
CG A:ASP297 3.5 70.3 1.0
OD2 A:ASP301 3.5 76.1 1.0
H A:ARG303 3.7 88.8 1.0
ND2 A:ASN299 3.7 79.4 1.0
H A:ASP301 3.9 92.3 1.0
H A:VAL298 3.9 72.1 1.0
HD22 A:LEU332 4.0 75.2 1.0
CA A:ARG303 4.1 71.9 1.0
CB A:ASP305 4.1 56.8 1.0
CB A:ARG303 4.1 81.2 1.0
H A:GLN333 4.1 77.4 1.0
N A:ARG303 4.1 74.0 1.0
N A:ASP305 4.1 58.3 1.0
CA A:ASP297 4.1 65.8 1.0
H A:ASP305 4.2 70.0 1.0
CB A:ASP297 4.2 69.6 1.0
C A:HIS304 4.2 60.6 1.0
HB2 A:ASP297 4.3 83.6 1.0
HB3 A:GLN333 4.3 80.4 1.0
N A:ASN299 4.4 65.2 1.0
N A:VAL298 4.4 60.1 1.0
HB3 A:ARG303 4.4 97.4 1.0
N A:HIS304 4.4 66.0 1.0
OD2 A:ASP297 4.5 75.3 1.0
HB2 A:ASP305 4.5 68.1 1.0
HD23 A:LEU332 4.5 75.2 1.0
HD22 A:ASN299 4.5 95.2 1.0
HA A:HIS304 4.5 75.0 1.0
CA A:ASP305 4.6 56.7 1.0
O A:HIS304 4.6 61.7 1.0
HG22 A:VAL298 4.6 69.8 1.0
HB3 A:ASP305 4.6 68.1 1.0
C A:ASP297 4.6 65.0 1.0
CB A:ASN299 4.6 69.7 1.0
HA A:ASP305 4.6 68.0 1.0
N A:ASP301 4.7 76.9 1.0
CA A:HIS304 4.7 62.5 1.0
CB A:ASP301 4.7 80.2 1.0
CD2 A:LEU332 4.7 62.7 1.0
H A:GLY300 4.8 85.8 1.0
HA A:LEU332 4.8 74.0 1.0
HB3 A:LEU332 4.8 77.1 1.0
N A:GLN333 4.8 64.5 1.0
CA A:ASN299 4.9 68.9 1.0
HA A:ARG303 5.0 86.2 1.0

Calcium binding site 3 out of 8 in 4z7o

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Calcium binding site 3 out of 8 in the Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca504

b:57.7
occ:1.00
O A:HOH656 2.2 34.3 1.0
O A:TYR371 2.3 68.6 1.0
OD1 A:ASP365 2.3 68.7 1.0
OD1 A:ASP373 2.4 64.6 1.0
OD1 A:ASP369 2.4 71.8 1.0
OD2 A:ASP373 2.4 71.0 1.0
OD1 A:ASP367 2.4 67.5 1.0
CG A:ASP373 2.7 63.2 1.0
HA A:ASP365 3.4 78.7 1.0
CG A:ASP369 3.4 73.6 1.0
C A:TYR371 3.4 69.8 1.0
H A:ASP367 3.5 78.3 1.0
H A:LEU366 3.5 80.5 1.0
CG A:ASP365 3.5 69.7 1.0
H A:ASP369 3.6 94.4 1.0
CG A:ASP367 3.6 68.2 1.0
H A:TYR371 3.6 89.0 1.0
HD22 A:LEU393 3.6 79.5 1.0
H A:GLY394 3.7 81.1 1.0
HB2 A:TYR371 3.7 87.7 1.0
OD2 A:ASP369 4.0 74.1 1.0
N A:LEU366 4.1 67.1 1.0
OD2 A:ASP367 4.1 69.6 1.0
H A:ARG368 4.1 83.5 1.0
CA A:ASP365 4.2 65.6 1.0
HA A:ASN372 4.2 79.7 1.0
HB3 A:LEU393 4.2 78.2 1.0
CB A:ASP373 4.2 61.2 1.0
N A:ASP367 4.2 65.2 1.0
N A:TYR371 4.2 74.1 1.0
CA A:TYR371 4.2 72.7 1.0
OD2 A:ASP365 4.3 81.3 1.0
C A:ASN372 4.4 64.8 1.0
N A:ASP369 4.4 78.7 1.0
CB A:TYR371 4.4 73.1 1.0
N A:ASN372 4.4 68.9 1.0
CB A:ASP365 4.5 68.2 1.0
N A:GLY394 4.5 67.6 1.0
C A:ASP365 4.5 64.6 1.0
N A:ASP373 4.5 62.9 1.0
CD2 A:LEU393 4.5 66.3 1.0
HD23 A:LEU393 4.6 79.5 1.0
CA A:ASN372 4.6 66.4 1.0
N A:ARG368 4.6 69.6 1.0
CB A:ASP369 4.6 77.0 1.0
HA A:LEU393 4.6 76.6 1.0
HB2 A:ASP373 4.6 73.4 1.0
HB3 A:LEU366 4.6 82.1 1.0
HB3 A:ASP373 4.6 73.4 1.0
HB3 A:ASP369 4.7 92.4 1.0
H A:ASP373 4.7 75.4 1.0
O A:ASN372 4.7 65.6 1.0
H A:GLY370 4.7 91.8 1.0
CB A:ASP367 4.8 67.6 1.0
HB3 A:TYR371 4.8 87.7 1.0
CA A:ASP367 4.9 67.1 1.0
HA3 A:GLY394 4.9 81.9 1.0
CA A:ASP373 4.9 61.5 1.0
HB2 A:ASP365 4.9 81.8 1.0
CA A:ASP369 5.0 76.9 1.0
C A:ASP367 5.0 69.5 1.0
O A:GLY364 5.0 62.2 1.0
CB A:LEU393 5.0 65.1 1.0
CA A:LEU366 5.0 63.0 1.0

Calcium binding site 4 out of 8 in 4z7o

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Calcium binding site 4 out of 8 in the Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca505

b:66.5
occ:1.00
O A:TYR432 2.2 62.4 1.0
OD1 A:ASP426 2.3 63.9 1.0
OD1 A:ASP434 2.3 67.3 1.0
OD2 A:ASP434 2.3 67.8 1.0
OD1 A:ASP428 2.3 63.1 1.0
OD1 A:ASN430 2.3 64.7 1.0
O A:HOH619 2.4 42.0 1.0
CG A:ASP434 2.6 65.5 1.0
CG A:ASP428 3.3 63.0 1.0
HA A:ASP426 3.3 79.2 1.0
H A:TYR432 3.4 79.7 1.0
CG A:ASP426 3.4 65.0 1.0
C A:TYR432 3.4 63.0 1.0
CG A:ASN430 3.5 65.8 1.0
H A:ASP428 3.5 75.2 1.0
H A:ASN430 3.6 81.6 1.0
OD2 A:ASP428 3.6 65.7 1.0
HB2 A:TYR432 3.7 77.3 1.0
H A:ALA450 3.7 61.4 1.0
H A:ILE427 3.8 73.4 1.0
HD21 A:ASN430 3.9 78.7 1.0
CA A:ASP426 4.0 66.0 1.0
HB3 A:ALA450 4.0 64.9 1.0
N A:TYR432 4.1 66.4 1.0
CB A:ASP434 4.1 63.1 1.0
ND2 A:ASN430 4.1 65.6 1.0
CA A:TYR432 4.1 64.9 1.0
CB A:ASP426 4.1 69.7 1.0
O A:ALA450 4.2 59.0 1.0
N A:ILE427 4.2 61.1 1.0
HG2 A:ARG449 4.3 68.6 1.0
H A:ASP429 4.3 79.5 1.0
OD2 A:ASP426 4.3 67.0 1.0
HA A:PRO433 4.3 72.9 1.0
HB2 A:ASP426 4.3 83.6 1.0
N A:ASP428 4.3 62.7 1.0
CB A:TYR432 4.4 64.4 1.0
C A:PRO433 4.4 59.1 1.0
N A:PRO433 4.4 62.3 1.0
N A:ASN430 4.4 68.0 1.0
HG22 A:ILE427 4.4 70.8 1.0
N A:ASP434 4.4 62.3 1.0
C A:ASP426 4.4 65.0 1.0
HB2 A:ASP434 4.5 75.7 1.0
N A:ALA450 4.5 51.2 1.0
CB A:ASP428 4.6 63.3 1.0
CA A:PRO433 4.6 60.7 1.0
CB A:ASN430 4.6 67.6 1.0
HB3 A:ASP434 4.6 75.7 1.0
HB3 A:ASN430 4.6 81.2 1.0
H A:ASP434 4.7 74.8 1.0
HA A:ARG449 4.7 65.1 1.0
H A:GLY431 4.7 96.7 1.0
N A:ASP429 4.7 66.3 1.0
O A:PRO433 4.7 58.9 1.0
HB3 A:TYR432 4.7 77.3 1.0
CA A:ASP434 4.7 61.4 1.0
HA A:ASP434 4.8 73.6 1.0
HB3 A:ASP428 4.9 76.0 1.0
CA A:ASP428 4.9 64.0 1.0
CA A:ASN430 4.9 69.0 1.0
CB A:ALA450 4.9 54.1 1.0
N A:GLY431 4.9 80.6 1.0
HD22 A:ASN430 5.0 78.7 1.0
HB3 A:ARG449 5.0 70.5 1.0

Calcium binding site 5 out of 8 in 4z7o

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Calcium binding site 5 out of 8 in the Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca503

b:0.7
occ:1.00
OD1 C:ASP245 2.3 0.6 1.0
OG1 C:THR250 2.3 0.9 1.0
OE2 C:GLU243 2.3 0.1 1.0
OE2 C:GLU252 2.4 1.0 1.0
O C:THR250 2.4 0.8 1.0
OE1 C:GLU243 2.4 0.7 1.0
OE1 C:GLU252 2.4 0.3 1.0
O C:ASP247 2.4 0.2 1.0
CD C:GLU243 2.6 0.1 1.0
CD C:GLU252 2.7 0.7 1.0
C C:THR250 2.9 0.8 1.0
CG C:ASP245 3.2 0.0 1.0
CB C:THR250 3.4 0.9 1.0
OD2 C:ASP245 3.4 0.3 1.0
HA C:THR251 3.5 0.8 1.0
CA C:THR250 3.5 0.0 1.0
H C:THR250 3.5 0.4 1.0
N C:THR251 3.6 0.8 1.0
C C:ASP247 3.6 0.8 1.0
HB C:THR250 3.6 0.9 1.0
HB3 C:ASP247 3.7 0.0 1.0
HA C:GLU243 3.9 0.3 1.0
H C:GLU252 3.9 0.7 1.0
N C:THR250 3.9 0.9 1.0
H C:ASP245 3.9 0.1 1.0
CA C:THR251 4.0 0.3 1.0
CG C:GLU243 4.1 0.7 1.0
HA C:LEU248 4.2 0.2 1.0
CG C:GLU252 4.2 0.6 1.0
H C:THR251 4.2 0.6 1.0
N C:GLU252 4.2 0.1 1.0
H C:PHE244 4.2 0.5 1.0
C C:THR251 4.4 0.2 1.0
HG3 C:GLU243 4.4 0.2 1.0
HA C:THR250 4.4 0.2 1.0
CA C:ASP247 4.4 0.7 1.0
H C:ASP247 4.5 0.7 1.0
CB C:ASP245 4.5 0.4 1.0
CB C:ASP247 4.5 0.4 1.0
N C:ASP247 4.5 0.2 1.0
N C:LEU248 4.6 0.6 1.0
HG3 C:GLU252 4.6 0.1 1.0
HG2 C:GLU252 4.6 0.1 1.0
CG2 C:THR250 4.7 0.5 1.0
HG2 C:GLU243 4.7 0.2 1.0
CA C:LEU248 4.7 0.8 1.0
HB3 C:ASP245 4.7 0.3 1.0
CA C:GLU243 4.7 0.1 1.0
N C:ASP245 4.7 0.9 1.0
C C:LEU248 4.7 0.8 1.0
HB2 C:GLU243 4.8 0.8 1.0
HG23 C:THR250 4.8 0.4 1.0
CB C:GLU243 4.8 0.6 1.0
O C:LEU248 4.8 0.4 1.0
HB2 C:GLU252 4.9 0.2 1.0
N C:PHE244 4.9 0.7 1.0
HG21 C:THR250 4.9 0.4 1.0

Calcium binding site 6 out of 8 in 4z7o

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Calcium binding site 6 out of 8 in the Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca504

b:0.3
occ:1.00
O C:ARG303 2.2 0.5 1.0
OD1 C:ASP301 2.3 0.5 1.0
OD1 C:ASP305 2.3 0.7 1.0
OD2 C:ASP305 2.3 0.9 1.0
OD1 C:ASN299 2.4 0.5 1.0
OD1 C:ASP297 2.4 0.2 1.0
CG C:ASP305 2.6 0.2 1.0
CG C:ASP301 3.1 0.1 1.0
OD2 C:ASP301 3.2 0.8 1.0
HD21 C:ASN299 3.2 0.0 1.0
CG C:ASN299 3.3 0.6 1.0
HB2 C:ARG303 3.3 0.2 1.0
C C:ARG303 3.4 0.4 1.0
HA C:ASP297 3.4 0.6 1.0
H C:ARG303 3.5 0.1 1.0
CG C:ASP297 3.6 0.2 1.0
ND2 C:ASN299 3.6 0.8 1.0
H C:ASN299 3.7 0.4 1.0
HD22 C:LEU332 3.8 0.1 1.0
H C:GLN333 3.8 0.1 1.0
H C:ASP301 4.0 0.8 1.0
CA C:ARG303 4.0 0.4 1.0
N C:ARG303 4.1 0.6 1.0
CB C:ARG303 4.1 0.5 1.0
CB C:ASP305 4.1 0.9 1.0
H C:VAL298 4.1 0.6 1.0
N C:ASP305 4.2 0.8 1.0
CA C:ASP297 4.2 0.9 1.0
H C:ASP305 4.2 0.1 1.0
HB3 C:GLN333 4.3 0.4 1.0
C C:HIS304 4.3 0.1 1.0
CB C:ASP297 4.3 0.6 1.0
HD23 C:LEU332 4.4 0.1 1.0
HB2 C:ASP297 4.4 0.3 1.0
OD2 C:ASP297 4.5 0.2 1.0
N C:HIS304 4.5 0.8 1.0
HB3 C:ARG303 4.5 0.2 1.0
HD22 C:ASN299 4.5 0.0 1.0
HB2 C:ASP305 4.5 0.3 1.0
N C:ASN299 4.5 0.5 1.0
CD2 C:LEU332 4.5 0.6 1.0
CB C:ASP301 4.5 0.6 1.0
N C:VAL298 4.6 0.6 1.0
HA C:HIS304 4.6 0.9 1.0
CA C:ASP305 4.6 0.2 1.0
HB3 C:ASP305 4.6 0.3 1.0
HG22 C:VAL298 4.6 0.7 1.0
HA C:LEU332 4.6 0.5 1.0
HA C:ASP305 4.6 0.3 1.0
CB C:ASN299 4.7 0.9 1.0
N C:GLN333 4.7 0.2 1.0
O C:HIS304 4.7 0.4 1.0
HB3 C:LEU332 4.7 0.6 1.0
C C:ASP297 4.7 0.3 1.0
CA C:HIS304 4.7 0.6 1.0
N C:ASP301 4.7 0.5 1.0
HB3 C:ASP301 4.8 1.0 1.0
HB3 C:ASN299 5.0 0.3 1.0
HA C:ARG303 5.0 0.5 1.0
H C:GLY300 5.0 0.9 1.0
HB2 C:GLN333 5.0 0.4 1.0
O C:GLN333 5.0 0.8 1.0
H C:GLY302 5.0 0.6 1.0

Calcium binding site 7 out of 8 in 4z7o

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Calcium binding site 7 out of 8 in the Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca505

b:99.3
occ:1.00
O C:TYR371 2.3 0.5 1.0
O C:HOH608 2.3 58.3 1.0
OD1 C:ASP365 2.3 0.9 1.0
OD2 C:ASP373 2.4 92.8 1.0
OD1 C:ASP367 2.4 99.5 1.0
OD1 C:ASP373 2.4 94.3 1.0
OD1 C:ASP369 2.4 0.9 1.0
CG C:ASP373 2.7 92.2 1.0
HA C:ASP365 3.2 0.6 1.0
H C:LEU366 3.2 0.4 1.0
H C:ASP367 3.3 0.3 1.0
CG C:ASP369 3.3 0.0 1.0
C C:TYR371 3.4 0.1 1.0
CG C:ASP367 3.5 0.3 1.0
H C:TYR371 3.6 0.4 1.0
CG C:ASP365 3.6 0.2 1.0
OD2 C:ASP369 3.7 0.9 1.0
H C:ASP369 3.7 0.4 1.0
HB2 C:TYR371 3.8 1.0 1.0
N C:LEU366 3.8 94.5 1.0
H C:GLY394 3.8 0.5 1.0
HD22 C:LEU393 4.0 0.8 1.0
CA C:ASP365 4.0 0.0 1.0
OD2 C:ASP367 4.1 0.7 1.0
N C:ASP367 4.1 96.9 1.0
HA C:ASN372 4.2 0.7 1.0
N C:TYR371 4.2 0.6 1.0
CB C:ASP373 4.2 94.4 1.0
H C:GLY370 4.2 0.8 1.0
CA C:TYR371 4.2 0.5 1.0
C C:ASP365 4.3 97.2 1.0
HB3 C:LEU393 4.3 0.3 1.0
HB3 C:LEU366 4.4 0.6 1.0
H C:ARG368 4.4 0.2 1.0
C C:ASN372 4.4 95.0 1.0
CB C:ASP365 4.4 1.0 1.0
N C:ASN372 4.4 0.8 1.0
OD2 C:ASP365 4.4 0.0 1.0
CB C:TYR371 4.5 0.3 1.0
N C:ASP373 4.5 0.6 1.0
CA C:ASN372 4.6 98.1 1.0
N C:ASP369 4.6 0.3 1.0
CB C:ASP369 4.6 0.3 1.0
HB2 C:ASP373 4.6 0.3 1.0
N C:GLY394 4.6 95.5 1.0
HB3 C:ASP369 4.7 0.5 1.0
H C:ASP373 4.7 0.1 1.0
HB3 C:ASP373 4.7 0.3 1.0
O C:ASN372 4.7 95.6 1.0
N C:ARG368 4.7 0.3 1.0
HA C:LEU393 4.7 0.5 1.0
CB C:ASP367 4.8 99.8 1.0
CA C:LEU366 4.8 92.9 1.0
O C:GLY364 4.8 0.1 1.0
CA C:ASP367 4.8 99.7 1.0
CD2 C:LEU393 4.9 0.5 1.0
HB2 C:ASP365 4.9 1.0 1.0
HB3 C:TYR371 4.9 1.0 1.0
N C:GLY370 4.9 0.0 1.0
CA C:ASP373 4.9 0.3 1.0
HA3 C:GLY394 4.9 0.1 1.0
C C:LEU366 4.9 95.3 1.0
CB C:LEU366 5.0 89.7 1.0

Calcium binding site 8 out of 8 in 4z7o

Go back to Calcium Binding Sites List in 4z7o
Calcium binding site 8 out of 8 in the Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Integrin ALPHAIIBBETA3 in Complex with Agdv Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca506

b:0.1
occ:1.00
O C:TYR432 2.2 88.3 1.0
OD1 C:ASP434 2.3 90.0 1.0
OD1 C:ASP426 2.3 91.9 1.0
OD1 C:ASP428 2.3 88.2 1.0
OD1 C:ASN430 2.3 86.6 1.0
OD2 C:ASP434 2.4 95.2 1.0
O C:HOH601 2.4 61.6 1.0
CG C:ASP434 2.6 90.0 1.0
HA C:ASP426 3.2 0.5 1.0
CG C:ASP428 3.3 87.9 1.0
CG C:ASP426 3.3 94.8 1.0
CG C:ASN430 3.3 88.3 1.0
C C:TYR432 3.3 92.4 1.0
H C:TYR432 3.4 0.8 1.0
HB2 C:TYR432 3.5 0.3 1.0
OD2 C:ASP428 3.6 87.5 1.0
H C:ASP428 3.6 0.6 1.0
H C:ASN430 3.7 0.0 1.0
HD21 C:ASN430 3.7 0.5 1.0
H C:ALA450 3.8 93.0 1.0
ND2 C:ASN430 3.9 88.0 1.0
CA C:ASP426 4.0 90.4 1.0
H C:ILE427 4.0 0.0 1.0
HB3 C:ALA450 4.0 95.7 1.0
CA C:TYR432 4.0 91.6 1.0
N C:TYR432 4.1 93.2 1.0
CB C:ASP426 4.1 94.3 1.0
CB C:ASP434 4.1 81.4 1.0
OD2 C:ASP426 4.1 98.5 1.0
CB C:TYR432 4.2 91.9 1.0
HB2 C:ASP426 4.2 0.2 1.0
C C:PRO433 4.2 81.6 1.0
O C:ALA450 4.2 83.6 1.0
N C:PRO433 4.3 94.9 1.0
HA C:PRO433 4.3 0.3 1.0
N C:ASP434 4.4 77.1 1.0
HB3 C:TYR432 4.4 0.3 1.0
HB2 C:ASP434 4.4 97.7 1.0
N C:ILE427 4.4 86.7 1.0
H C:ASP429 4.4 0.3 1.0
HG2 C:ARG449 4.4 93.0 1.0
O C:PRO433 4.4 83.6 1.0
N C:ASP428 4.5 91.3 1.0
N C:ASN430 4.5 92.5 1.0
CB C:ASN430 4.5 91.7 1.0
C C:ASP426 4.5 89.9 1.0
N C:ALA450 4.5 77.5 1.0
CA C:PRO433 4.5 91.9 1.0
HB3 C:ASN430 4.5 1.0 1.0
H C:ASP434 4.6 92.5 1.0
HG22 C:ILE427 4.6 96.9 1.0
CB C:ASP428 4.6 90.2 1.0
HB3 C:ASP434 4.6 97.7 1.0
HA C:ARG449 4.7 90.3 1.0
CA C:ASP434 4.7 74.4 1.0
HA C:ASP434 4.7 89.3 1.0
HD22 C:ASN430 4.7 0.5 1.0
N C:ASP429 4.8 0.8 1.0
CB C:ALA450 4.9 79.8 1.0
CA C:ASN430 4.9 93.6 1.0
HB3 C:ARG449 4.9 93.0 1.0
HB3 C:ASP426 5.0 0.2 1.0
HA C:TYR432 5.0 0.9 1.0
CA C:ASP428 5.0 96.2 1.0
H C:GLY431 5.0 0.2 1.0

Reference:

F.Y.Lin, J.Zhu, E.T.Eng, N.E.Hudson, T.A.Springer. Beta-Subunit Binding Is Sufficient For Ligands to Open the Integrin Alpha Iib Beta 3 Headpiece. J.Biol.Chem. V. 291 4537 2016.
ISSN: ESSN 1083-351X
PubMed: 26631735
DOI: 10.1074/JBC.M115.705624
Page generated: Sat Dec 12 05:15:05 2020

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