Calcium in PDB 4z8b: Crystal Structure of A Dgl Mutant - H51G H131N

The structure of Crystal Structure of A Dgl Mutant - H51G H131N, PDB code: 4z8b was solved by S.Zamora-Caballero, A.Perez, L.Sanz, J.Bravo, J.J.Calvete, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.67 / 1.95
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	62.350, 67.080, 108.620, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 24.3

The structure of Crystal Structure of A Dgl Mutant - H51G H131N also contains other interesting chemical elements:

Manganese	(Mn)	1 atom
Bromine	(Br)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Calcium atom in the Crystal Structure of A Dgl Mutant - H51G H131N (pdb code 4z8b). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Dgl Mutant - H51G H131N, PDB code: 4z8b:

Calcium binding site 1 out of 1 in the Crystal Structure of A Dgl Mutant - H51G H131N


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Dgl Mutant - H51G H131N within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:30.0 occ:1.00 O A:TYR12 2.3 34.8 1.0 O A:HOH415 2.3 25.5 1.0 OD1 A:ASP10 2.4 42.6 1.0 O A:HOH405 2.4 23.2 1.0 OD2 A:ASP10 2.4 32.6 1.0 OD1 A:ASN14 2.5 37.4 1.0 OD2 A:ASP19 2.6 47.2 1.0 CG A:ASP10 2.7 38.6 1.0 H A:ASN14 3.4 58.3 1.0 C A:TYR12 3.6 34.9 1.0 CG A:ASP19 3.6 47.2 1.0 CG A:ASN14 3.6 41.8 1.0 HB2 A:ASN14 3.7 47.0 1.0 HA A:PRO13 3.9 50.5 1.0 HE1 A:HIS24 3.9 48.4 1.0 N A:ASN14 3.9 48.6 1.0 H A:TYR12 4.0 39.3 1.0 HA A:ARG228 4.0 41.7 1.0 OD1 A:ASP19 4.1 42.8 1.0 HB3 A:TYR12 4.1 42.5 1.0 MN A:MN302 4.1 24.1 1.0 O A:HOH412 4.1 13.0 1.0 CB A:ASN14 4.2 39.2 1.0 HD2 A:TYR12 4.2 48.1 1.0 CB A:ASP10 4.2 30.4 1.0 HB2 A:ARG228 4.3 44.1 1.0 CA A:PRO13 4.4 42.1 1.0 C A:PRO13 4.4 44.3 1.0 N A:PRO13 4.4 35.5 1.0 O A:ARG228 4.5 32.3 1.0 CA A:TYR12 4.5 34.3 1.0 HB3 A:ASP10 4.6 36.5 1.0 N A:TYR12 4.6 32.7 1.0 CE1 A:HIS24 4.6 40.3 1.0 O A:ASP208 4.6 32.8 1.0 HB2 A:ASP10 4.7 36.5 1.0 HD11 A:ILE17 4.7 70.4 1.0 HB2 A:ASP19 4.7 62.3 1.0 CB A:ASP19 4.7 51.9 1.0 CA A:ASN14 4.7 39.3 1.0 ND2 A:ASN14 4.7 40.1 1.0 CB A:TYR12 4.8 35.4 1.0 CA A:ARG228 4.8 34.8 1.0 HA A:ASP10 4.8 35.5 1.0 HB3 A:ASP19 4.8 62.3 1.0 HD21 A:ASN14 4.8 48.1 1.0 HB3 A:ASP208 4.8 42.3 1.0 OD2 A:ASP208 4.9 37.8 1.0 CB A:ARG228 4.9 36.8 1.0 NE2 A:HIS24 4.9 39.3 1.0 CD2 A:TYR12 5.0 40.1 1.0 HD21 A:LEU230 5.0 47.4 1.0 HB3 A:ARG228 5.0 44.1 1.0

S.Zamora-Caballero, A.Perez, L.Sanz, J.Bravo, J.J.Calvete. Quaternary Structure of Dioclea Grandiflora Lectin Assessed By Equilibrium Sedimentation and Crystallographic Analysis of Recombinant Mutants. Febs Lett. V. 589 2290 2015.
ISSN: ISSN 0014-5793
PubMed: 26226421
DOI: 10.1016/J.FEBSLET.2015.07.020