Atomistry » Calcium » PDB 4z70-4zmo » 4zar
Atomistry »
  Calcium »
    PDB 4z70-4zmo »
      4zar »

Calcium in PDB 4zar: Crystal Structure of Proteinase K From Engyodontium Albuminhibited By Methoxysuccinyl-Ala-Ala-Pro-Phe-Chloromethyl Ketone at 1.15 A Resolution

Enzymatic activity of Crystal Structure of Proteinase K From Engyodontium Albuminhibited By Methoxysuccinyl-Ala-Ala-Pro-Phe-Chloromethyl Ketone at 1.15 A Resolution

All present enzymatic activity of Crystal Structure of Proteinase K From Engyodontium Albuminhibited By Methoxysuccinyl-Ala-Ala-Pro-Phe-Chloromethyl Ketone at 1.15 A Resolution:
3.4.21.64;

Protein crystallography data

The structure of Crystal Structure of Proteinase K From Engyodontium Albuminhibited By Methoxysuccinyl-Ala-Ala-Pro-Phe-Chloromethyl Ketone at 1.15 A Resolution, PDB code: 4zar was solved by M.R.Sawaya, D.Cascio, M.Collazo, C.Bond, A.Cohen, A.Denicola, K.Eden, K.Jain, C.Leung, N.Lubock, J.Mccormick, J.Rosinski, L.Spiegelman, Y.Athar, N.Tibrewal, J.Winter, S.Solomon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.58 / 1.15
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.850, 67.850, 102.510, 90.00, 90.00, 90.00
R / Rfree (%) 11 / 13.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Proteinase K From Engyodontium Albuminhibited By Methoxysuccinyl-Ala-Ala-Pro-Phe-Chloromethyl Ketone at 1.15 A Resolution (pdb code 4zar). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Proteinase K From Engyodontium Albuminhibited By Methoxysuccinyl-Ala-Ala-Pro-Phe-Chloromethyl Ketone at 1.15 A Resolution, PDB code: 4zar:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 4zar

Go back to Calcium Binding Sites List in 4zar
Calcium binding site 1 out of 2 in the Crystal Structure of Proteinase K From Engyodontium Albuminhibited By Methoxysuccinyl-Ala-Ala-Pro-Phe-Chloromethyl Ketone at 1.15 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Proteinase K From Engyodontium Albuminhibited By Methoxysuccinyl-Ala-Ala-Pro-Phe-Chloromethyl Ketone at 1.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:12.6
occ:1.00
 O A:VAL177 2.4 11.7 1.0
O A:HOH509 2.4 17.6 1.0
O A:PRO175 2.4 13.1 1.0
O A:HOH444 2.4 14.8 1.0
O A:HOH498 2.4 12.5 1.0
OD2 A:ASP200 2.4 12.0 1.0
O A:HOH601 2.5 16.6 1.0
OD1 A:ASP200 2.6 15.6 1.0
CG A:ASP200 2.9 12.3 1.0
C A:PRO175 3.5 12.0 1.0
C A:VAL177 3.6 10.0 1.0
HA A:CYS178 3.7 10.5 0.5
HA A:CYS178 3.8 10.5 0.5
H A:THR179 3.8 9.9 1.0
HA A:PRO175 3.9 13.9 1.0
N A:VAL177 4.2 11.3 1.0
H A:VAL177 4.2 11.3 1.0
CA A:PRO175 4.3 13.3 1.0
O A:VAL198 4.3 14.1 1.0
CB A:ASP200 4.4 11.8 1.0
HA A:SER176 4.4 12.1 1.0
C A:SER176 4.4 12.0 1.0
N A:SER176 4.5 11.7 1.0
CA A:CYS178 4.5 9.9 0.5
N A:CYS178 4.5 9.8 1.0
O A:GLU174 4.5 11.9 1.0
CA A:CYS178 4.5 9.8 0.5
O A:HOH679 4.5 29.5 1.0
CA A:VAL177 4.6 10.5 1.0
N A:THR179 4.6 9.4 1.0
HH12 A:ARG250 4.6 27.1 0.3
CA A:SER176 4.7 12.0 1.0
O A:HOH495 4.7 24.5 1.0
HB2 A:ASP200 4.7 12.2 1.0
HH11 A:ARG250 4.7 26.6 0.3
O A:HOH478 4.7 17.2 1.0
HG21 A:VAL198 4.8 17.0 1.0
HB3 A:ASP200 4.8 12.1 1.0
OG1 A:THR179 4.8 10.4 1.0
HB A:THR179 4.8 10.1 1.0
HG23 A:VAL177 4.8 12.6 1.0
HG23 A:VAL198 4.8 17.3 1.0
SG A:CYS249 4.9 19.0 0.5
HG1 A:THR179 4.9 10.5 0.0
NH1 A:ARG250 5.0 24.4 0.3
O A:SER176 5.0 13.3 1.0

Calcium binding site 2 out of 2 in 4zar

Go back to Calcium Binding Sites List in 4zar
Calcium binding site 2 out of 2 in the Crystal Structure of Proteinase K From Engyodontium Albuminhibited By Methoxysuccinyl-Ala-Ala-Pro-Phe-Chloromethyl Ketone at 1.15 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Proteinase K From Engyodontium Albuminhibited By Methoxysuccinyl-Ala-Ala-Pro-Phe-Chloromethyl Ketone at 1.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:16.8
occ:0.75
 O A:THR16 2.3 18.5 1.0
O A:HOH457 2.4 20.9 1.0
O A:HOH633 2.4 27.0 1.0
O A:HOH565 2.4 26.9 0.7
O A:HOH635 2.4 22.2 1.0
OD2 A:ASP260 2.5 18.7 1.0
OD1 A:ASP260 2.5 20.3 1.0
O A:HOH565 2.6 26.7 0.3
CG A:ASP260 2.8 20.7 1.0
C A:THR16 3.6 13.6 1.0
HA A:SER17 3.8 13.0 1.0
HB A:THR16 3.8 15.8 1.0
HH22 A:ARG12 3.8 12.3 1.0
HB3 A:ASN257 4.2 12.6 1.0
HA A:THR16 4.3 12.6 1.0
CB A:ASP260 4.3 16.2 1.0
OD1 A:ASN257 4.4 14.0 1.0
CA A:THR16 4.4 12.0 1.0
N A:SER17 4.5 12.1 1.0
O A:HOH505 4.5 30.6 1.0
NH2 A:ARG12 4.6 12.4 1.0
CA A:SER17 4.6 12.8 1.0
CB A:THR16 4.6 15.3 1.0
HB3 A:ASP260 4.6 15.7 1.0
CG A:ASN257 4.7 12.2 1.0
HD3 A:PRO18 4.7 13.7 1.0
HH21 A:ARG12 4.8 12.3 1.0
HB2 A:ASP260 4.8 17.2 1.0
HA A:ASP260 4.8 16.8 1.0
OG A:SER17 4.9 23.2 1.0
CB A:ASN257 5.0 12.1 1.0

Reference:

M.R.Sawaya, D.Cascio, M.Collazo, C.Bond, A.Cohen, A.Denicola, K.Eden, K.Jain, C.Leung, N.Lubock, J.Mccormick, J.Rosinski, L.Spiegelman, Y.Athar, N.Tibrewal, J.Winter, S.Solomon. Crystal Structure of Proteinase K From Engyodontium Album Inhibited By Methoxysuccinyl-Ala-Ala-Pro-Phe-Chloromethyl Ketone at 1.15 A Resolution To Be Published.
Page generated: Sun Jul 14 15:34:25 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy