Calcium in PDB 4zcf: Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I

The structure of Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I, PDB code: 4zcf was solved by Y.K.Gupta, S.H.Chan, S.Y.Xu, A.K.Aggarwal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.60
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	101.838, 101.838, 533.031, 90.00, 90.00, 90.00
R / Rfree (%)	21.8 / 26.3

The structure of Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I also contains other interesting chemical elements:

Manganese

(Mn)

2 atoms

The binding sites of Calcium atom in the Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I (pdb code 4zcf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I, PDB code: 4zcf:

Calcium binding site 1 out of 1 in the Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long- Range Diffusion By ECOP15I within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca101 b:31.7 occ:1.00 O D:HOH202 2.1 34.1 1.0 OP1 D:DA8 2.1 40.4 1.0 O B:HOH717 2.3 30.4 1.0 O B:HOH723 2.4 34.6 1.0 P D:DA8 3.5 40.3 1.0 OP2 D:DA8 4.0 39.9 1.0 O D:HOH207 4.1 39.5 1.0 OD1 B:ASN228 4.3 49.3 1.0 O B:HOH728 4.3 45.1 1.0 O B:VAL239 4.4 35.9 1.0 O B:HIS241 4.4 35.6 1.0 O3' D:DC7 4.5 39.3 1.0 O5' D:DA8 4.5 39.3 1.0 OE2 B:GLU242 4.7 37.5 1.0 O5' D:DG9 4.7 43.3 1.0 CG B:GLU242 4.8 34.6 1.0 ND2 B:ASN228 4.8 32.5 1.0 CB B:ALA229 4.9 26.6 1.0 C B:GLU240 4.9 33.0 1.0 CA B:GLU240 4.9 29.6 1.0 C5' D:DA8 5.0 38.0 1.0 C3' D:DA8 5.0 39.6 1.0 CG B:ASN228 5.0 42.9 1.0

Y.K.Gupta, S.H.Chan, S.Y.Xu, A.K.Aggarwal. Structural Basis of Asymmetric Dna Methylation and Atp-Triggered Long-Range Diffusion By ECOP15I. Nat Commun V. 6 7363 2015.
ISSN: ESSN 2041-1723
PubMed: 26067164
DOI: 10.1038/NCOMMS8363