Calcium in PDB 4zet: Blood Dendritic Cell Antigen 2 (Bdca-2) Complexed with Galglcnacman

The structure of Blood Dendritic Cell Antigen 2 (Bdca-2) Complexed with Galglcnacman, PDB code: 4zet was solved by S.A.F.Jegouzo, H.Feinberg, T.Dungarwalla, K.Drickamer, W.I.Weis, M.E.Taylor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.56 / 2.90
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	37.559, 67.645, 118.142, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 26.3

The binding sites of Calcium atom in the Blood Dendritic Cell Antigen 2 (Bdca-2) Complexed with Galglcnacman (pdb code 4zet). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Blood Dendritic Cell Antigen 2 (Bdca-2) Complexed with Galglcnacman, PDB code: 4zet:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Blood Dendritic Cell Antigen 2 (Bdca-2) Complexed with Galglcnacman


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Blood Dendritic Cell Antigen 2 (Bdca-2) Complexed with Galglcnacman within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca304 b:14.7 occ:1.00 OE1 A:GLU178 2.4 20.4 1.0 OD1 A:ASN194 2.4 19.2 1.0 OD1 A:ASN174 2.4 27.3 1.0 O4 A:MAN303 2.4 21.2 1.0 O A:ASP195 2.4 19.8 1.0 O3 A:MAN303 2.5 21.0 1.0 OD1 A:ASP195 2.6 17.5 1.0 OE1 A:GLU172 2.7 22.1 1.0 CG A:ASN174 3.3 23.1 1.0 C4 A:MAN303 3.3 21.5 1.0 C3 A:MAN303 3.3 21.2 1.0 CG A:ASP195 3.3 20.1 1.0 CD A:GLU178 3.4 27.1 1.0 C A:ASP195 3.5 17.8 1.0 CG A:ASN194 3.6 18.7 1.0 N A:ASP195 3.7 13.9 1.0 ND2 A:ASN174 3.7 21.7 1.0 CD A:GLU172 3.7 23.5 1.0 OD2 A:ASP195 3.9 22.9 1.0 CA A:ASP195 4.0 13.2 1.0 OE2 A:GLU178 4.0 30.3 1.0 OE2 A:GLU172 4.1 27.1 1.0 ND2 A:ASN194 4.1 17.5 1.0 CB A:ASP195 4.2 18.6 1.0 N A:ASN174 4.4 21.7 1.0 CB A:ASN174 4.5 19.9 1.0 CG A:GLU178 4.6 26.1 1.0 C A:ASN194 4.6 16.1 1.0 N A:ILE196 4.6 22.9 1.0 C5 A:MAN303 4.6 25.4 1.0 CB A:GLU178 4.6 24.6 1.0 C2 A:MAN303 4.8 21.5 1.0 CB A:ASN194 4.8 11.8 1.0 CB A:ASN175 4.8 31.4 1.0 CA A:ASN174 4.9 21.0 1.0 CA A:ASN194 4.9 10.7 1.0

Calcium binding site 2 out of 2 in the Blood Dendritic Cell Antigen 2 (Bdca-2) Complexed with Galglcnacman


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Blood Dendritic Cell Antigen 2 (Bdca-2) Complexed with Galglcnacman within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca304 b:29.3 occ:1.00 O4 B:MAN303 2.4 37.9 1.0 OD1 B:ASP195 2.4 33.3 1.0 OD1 B:ASN194 2.5 35.0 1.0 O3 B:MAN303 2.5 39.4 1.0 OE1 B:GLU178 2.6 38.1 1.0 O B:ASP195 2.6 28.8 1.0 OD1 B:ASN174 2.6 42.5 1.0 OE1 B:GLU172 2.6 37.3 1.0 C4 B:MAN303 3.3 41.6 1.0 C3 B:MAN303 3.4 44.6 1.0 CG B:ASP195 3.5 36.1 1.0 CG B:ASN194 3.6 29.5 1.0 CD B:GLU178 3.6 40.0 1.0 C B:ASP195 3.7 26.1 1.0 CD B:GLU172 3.7 36.9 1.0 CG B:ASN174 3.8 40.3 1.0 N B:ASP195 3.8 31.0 1.0 OE2 B:GLU172 4.0 44.1 1.0 OE2 B:GLU178 4.0 40.5 1.0 ND2 B:ASN194 4.1 32.1 1.0 CA B:ASP195 4.2 27.4 1.0 OD2 B:ASP195 4.3 31.4 1.0 CB B:ASP195 4.5 34.9 1.0 ND2 B:ASN174 4.5 40.7 1.0 N B:ASN174 4.5 29.9 1.0 C5 B:MAN303 4.6 44.5 1.0 C2 B:MAN303 4.7 42.4 1.0 C B:ASN194 4.8 26.7 1.0 N B:ILE196 4.8 26.8 1.0 O2 B:MAN303 4.8 36.3 1.0 CB B:ASN194 4.8 21.8 1.0 CB B:ASN174 4.9 36.0 1.0 CG B:GLU178 4.9 36.6 1.0

S.A.F.Jegouzo, H.Feinberg, T.Dungarwalla, K.Drickamer, W.I.Weis, M.E.Taylor. A Novel Mechanism For Binding of Galactose-Terminated Glycansby the C-Type Carbohydrate-Recognition Domain in Blood Dendritic Cell Antigen 2. To Be Published.