Calcium in PDB 4zi8: Structure of Mouse Clustered PCDHGC3 EC1-3
Protein crystallography data
The structure of Structure of Mouse Clustered PCDHGC3 EC1-3, PDB code: 4zi8
was solved by
J.M.Nicoludis,
S.-Y.Lau,
C.P.I.Scharfe,
D.S.Marks,
W.A.Weihofen,
R.Gaudet,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.17 /
1.70
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
44.123,
82.286,
237.690,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
20.4 /
23.9
|
Other elements in 4zi8:
The structure of Structure of Mouse Clustered PCDHGC3 EC1-3 also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
15;
Binding sites:
The binding sites of Calcium atom in the Structure of Mouse Clustered PCDHGC3 EC1-3
(pdb code 4zi8). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 15 binding sites of Calcium where determined in the
Structure of Mouse Clustered PCDHGC3 EC1-3, PDB code: 4zi8:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 15 in 4zi8
Go back to
Calcium Binding Sites List in 4zi8
Calcium binding site 1 out
of 15 in the Structure of Mouse Clustered PCDHGC3 EC1-3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Mouse Clustered PCDHGC3 EC1-3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca401
b:32.2
occ:1.00
|
OD1
|
A:ASN208
|
2.3
|
37.1
|
1.0
|
|
O
|
A:ASN246
|
2.3
|
36.0
|
1.0
|
|
O
|
A:ASN210
|
2.3
|
31.7
|
1.0
|
|
OD2
|
A:ASP242
|
2.4
|
36.0
|
1.0
|
|
OD2
|
A:ASP296
|
2.4
|
31.7
|
1.0
|
|
OD2
|
A:ASP240
|
2.5
|
32.8
|
1.0
|
|
OD1
|
A:ASP240
|
2.5
|
35.1
|
1.0
|
|
CG
|
A:ASP240
|
2.8
|
33.8
|
1.0
|
|
CG
|
A:ASP296
|
3.3
|
32.9
|
1.0
|
|
CG
|
A:ASP242
|
3.4
|
38.4
|
1.0
|
|
C
|
A:ASN246
|
3.5
|
40.9
|
1.0
|
|
CG
|
A:ASN208
|
3.5
|
35.9
|
1.0
|
|
C
|
A:ASN210
|
3.5
|
35.1
|
1.0
|
|
CB
|
A:ASP242
|
3.7
|
42.0
|
1.0
|
|
CB
|
A:ASP296
|
3.7
|
31.8
|
1.0
|
|
ND2
|
A:ASN208
|
4.2
|
36.4
|
1.0
|
|
O
|
A:HOH526
|
4.2
|
38.2
|
1.0
|
|
OD1
|
A:ASP296
|
4.2
|
35.0
|
1.0
|
|
CB
|
A:ASP240
|
4.3
|
34.7
|
1.0
|
|
N
|
A:ASN210
|
4.3
|
34.0
|
1.0
|
|
CA
|
A:ASN246
|
4.3
|
40.3
|
1.0
|
|
CA
|
A:ASN210
|
4.3
|
37.8
|
1.0
|
|
N
|
A:GLY247
|
4.4
|
44.6
|
1.0
|
|
CA
|
A:GLY247
|
4.5
|
42.5
|
1.0
|
|
OD1
|
A:ASP242
|
4.5
|
37.4
|
1.0
|
|
CB
|
A:ASN246
|
4.5
|
42.4
|
1.0
|
|
CB
|
A:ASN210
|
4.5
|
38.8
|
1.0
|
|
N
|
A:ALA211
|
4.5
|
33.8
|
1.0
|
|
CB
|
A:ASN208
|
4.6
|
35.5
|
1.0
|
|
CA
|
A:ALA211
|
4.7
|
32.2
|
1.0
|
|
CA
|
A:ASN208
|
4.7
|
37.5
|
1.0
|
|
N
|
A:ASP242
|
4.7
|
39.6
|
1.0
|
|
C
|
A:ALA211
|
4.8
|
31.4
|
1.0
|
|
CD
|
A:PRO212
|
4.8
|
33.4
|
1.0
|
|
CA
|
A:ASP242
|
4.8
|
43.0
|
1.0
|
|
C
|
A:ASN208
|
4.9
|
38.0
|
1.0
|
|
N
|
A:PRO212
|
4.9
|
34.8
|
1.0
|
|
Calcium binding site 2 out
of 15 in 4zi8
Go back to
Calcium Binding Sites List in 4zi8
Calcium binding site 2 out
of 15 in the Structure of Mouse Clustered PCDHGC3 EC1-3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Mouse Clustered PCDHGC3 EC1-3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca402
b:37.1
occ:1.00
|
O
|
A:HOH697
|
2.2
|
45.4
|
1.0
|
|
OE1
|
A:GLU175
|
2.2
|
52.2
|
1.0
|
|
OD2
|
A:ASP209
|
2.3
|
44.0
|
1.0
|
|
OE1
|
A:GLU116
|
2.5
|
46.1
|
1.0
|
|
OD1
|
A:ASP173
|
2.5
|
48.7
|
1.0
|
|
O
|
A:HOH716
|
2.6
|
38.5
|
1.0
|
|
CG
|
A:ASP209
|
3.2
|
39.4
|
1.0
|
|
CD
|
A:GLU175
|
3.3
|
57.3
|
1.0
|
|
OD1
|
A:ASP209
|
3.3
|
39.0
|
1.0
|
|
CD
|
A:GLU116
|
3.4
|
42.6
|
1.0
|
|
CG
|
A:ASP173
|
3.4
|
50.5
|
1.0
|
|
OE2
|
A:GLU116
|
3.6
|
44.8
|
1.0
|
|
OE2
|
A:GLU175
|
4.0
|
52.8
|
1.0
|
|
OD2
|
A:ASP173
|
4.1
|
51.5
|
1.0
|
|
CA
|
A:ASP173
|
4.2
|
48.8
|
1.0
|
|
CA
|
A:CA403
|
4.2
|
38.6
|
1.0
|
|
N
|
A:TRP174
|
4.2
|
44.6
|
1.0
|
|
CG
|
A:GLU175
|
4.3
|
55.4
|
1.0
|
|
N
|
A:GLU175
|
4.3
|
50.6
|
1.0
|
|
CB
|
A:ASP173
|
4.3
|
49.7
|
1.0
|
|
CB
|
A:GLU175
|
4.4
|
54.9
|
1.0
|
|
O
|
A:HOH569
|
4.4
|
38.6
|
1.0
|
|
C
|
A:ASP173
|
4.5
|
47.2
|
1.0
|
|
ND2
|
A:ASN210
|
4.5
|
38.3
|
1.0
|
|
CB
|
A:ASP209
|
4.6
|
42.2
|
1.0
|
|
CG
|
A:GLU116
|
4.6
|
40.1
|
1.0
|
|
Calcium binding site 3 out
of 15 in 4zi8
Go back to
Calcium Binding Sites List in 4zi8
Calcium binding site 3 out
of 15 in the Structure of Mouse Clustered PCDHGC3 EC1-3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Mouse Clustered PCDHGC3 EC1-3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca403
b:38.6
occ:1.00
|
OE2
|
A:GLU175
|
2.0
|
52.8
|
1.0
|
|
OD1
|
A:ASP206
|
2.1
|
51.7
|
1.0
|
|
OD1
|
A:ASP209
|
2.4
|
39.0
|
1.0
|
|
O
|
A:ALA207
|
2.4
|
39.7
|
1.0
|
|
OD1
|
A:ASP242
|
2.4
|
37.4
|
1.0
|
|
OE2
|
A:GLU116
|
2.4
|
44.8
|
1.0
|
|
CD
|
A:GLU175
|
2.9
|
57.3
|
1.0
|
|
OE1
|
A:GLU175
|
3.2
|
52.2
|
1.0
|
|
CG
|
A:ASP206
|
3.3
|
55.7
|
1.0
|
|
CG
|
A:ASP242
|
3.4
|
38.4
|
1.0
|
|
CG
|
A:ASP209
|
3.4
|
39.4
|
1.0
|
|
C
|
A:ALA207
|
3.5
|
40.2
|
1.0
|
|
CD
|
A:GLU116
|
3.5
|
42.6
|
1.0
|
|
N
|
A:ALA207
|
3.7
|
50.7
|
1.0
|
|
ND2
|
A:ASN210
|
3.8
|
38.3
|
1.0
|
|
OD2
|
A:ASP209
|
4.0
|
44.0
|
1.0
|
|
N
|
A:ASP209
|
4.0
|
38.1
|
1.0
|
|
OD2
|
A:ASP206
|
4.1
|
55.0
|
1.0
|
|
OE1
|
A:GLU116
|
4.1
|
46.1
|
1.0
|
|
CB
|
A:ASP242
|
4.1
|
42.0
|
1.0
|
|
CA
|
A:CA402
|
4.2
|
37.1
|
1.0
|
|
CA
|
A:ALA207
|
4.3
|
42.2
|
1.0
|
|
CA
|
A:ASP242
|
4.3
|
43.0
|
1.0
|
|
OD2
|
A:ASP242
|
4.3
|
36.0
|
1.0
|
|
CG
|
A:GLU175
|
4.3
|
55.4
|
1.0
|
|
CB
|
A:ASP206
|
4.4
|
51.4
|
1.0
|
|
CE3
|
A:TRP174
|
4.4
|
55.0
|
1.0
|
|
CA
|
A:ASP206
|
4.4
|
47.6
|
1.0
|
|
C
|
A:ASP206
|
4.5
|
53.9
|
1.0
|
|
N
|
A:ASN208
|
4.6
|
39.2
|
1.0
|
|
CB
|
A:ASP209
|
4.6
|
42.2
|
1.0
|
|
CA
|
A:ASP209
|
4.8
|
40.9
|
1.0
|
|
CG
|
A:GLU116
|
4.8
|
40.1
|
1.0
|
|
CA
|
A:ASN208
|
4.8
|
37.5
|
1.0
|
|
CB
|
A:TRP174
|
4.9
|
46.7
|
1.0
|
|
C
|
A:ASN208
|
4.9
|
38.0
|
1.0
|
|
Calcium binding site 4 out
of 15 in 4zi8
Go back to
Calcium Binding Sites List in 4zi8
Calcium binding site 4 out
of 15 in the Structure of Mouse Clustered PCDHGC3 EC1-3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of Mouse Clustered PCDHGC3 EC1-3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca404
b:20.5
occ:1.00
|
OD2
|
A:ASP100
|
2.2
|
23.3
|
1.0
|
|
O
|
A:HOH669
|
2.2
|
26.1
|
1.0
|
|
OD1
|
A:ASP63
|
2.3
|
18.1
|
1.0
|
|
OE2
|
A:GLU10
|
2.3
|
22.7
|
1.0
|
|
OE1
|
A:GLU65
|
2.4
|
22.7
|
1.0
|
|
OE1
|
A:GLU9
|
2.4
|
19.3
|
1.0
|
|
CG
|
A:ASP100
|
3.1
|
21.4
|
1.0
|
|
CD
|
A:GLU9
|
3.3
|
22.1
|
1.0
|
|
CD
|
A:GLU10
|
3.3
|
20.5
|
1.0
|
|
CG
|
A:ASP63
|
3.3
|
20.0
|
1.0
|
|
OD1
|
A:ASP100
|
3.4
|
19.0
|
1.0
|
|
CD
|
A:GLU65
|
3.6
|
21.5
|
1.0
|
|
CG
|
A:GLU10
|
3.7
|
21.5
|
1.0
|
|
OE2
|
A:GLU9
|
3.7
|
20.6
|
1.0
|
|
CA
|
A:CA405
|
4.1
|
21.4
|
1.0
|
|
CA
|
A:ASP63
|
4.1
|
20.1
|
1.0
|
|
OD2
|
A:ASP63
|
4.2
|
22.3
|
1.0
|
|
N
|
A:ARG64
|
4.2
|
21.7
|
1.0
|
|
CB
|
A:ASP63
|
4.2
|
19.9
|
1.0
|
|
O
|
A:HOH612
|
4.2
|
33.9
|
1.0
|
|
O
|
A:HOH551
|
4.3
|
24.9
|
1.0
|
|
ND2
|
A:ASN101
|
4.3
|
23.7
|
1.0
|
|
N
|
A:GLU65
|
4.3
|
20.1
|
1.0
|
|
NH2
|
A:ARG61
|
4.4
|
21.8
|
1.0
|
|
OE2
|
A:GLU65
|
4.4
|
23.6
|
1.0
|
|
C
|
A:ASP63
|
4.4
|
21.9
|
1.0
|
|
O
|
A:HOH650
|
4.4
|
30.1
|
1.0
|
|
OE1
|
A:GLU10
|
4.5
|
24.3
|
1.0
|
|
CB
|
A:ASP100
|
4.5
|
24.6
|
1.0
|
|
CG
|
A:GLU65
|
4.5
|
21.3
|
1.0
|
|
CB
|
A:GLU65
|
4.6
|
19.7
|
1.0
|
|
CG
|
A:GLU9
|
4.6
|
19.2
|
1.0
|
|
Calcium binding site 5 out
of 15 in 4zi8
Go back to
Calcium Binding Sites List in 4zi8
Calcium binding site 5 out
of 15 in the Structure of Mouse Clustered PCDHGC3 EC1-3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of Mouse Clustered PCDHGC3 EC1-3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca405
b:21.4
occ:1.00
|
OD1
|
A:ASP97
|
2.2
|
17.9
|
1.0
|
|
OE2
|
A:GLU65
|
2.3
|
23.6
|
1.0
|
|
OD1
|
A:ASP133
|
2.3
|
20.7
|
1.0
|
|
OE2
|
A:GLU9
|
2.3
|
20.6
|
1.0
|
|
OD1
|
A:ASP100
|
2.4
|
19.0
|
1.0
|
|
O
|
A:ILE98
|
2.4
|
19.5
|
1.0
|
|
OE1
|
A:GLU65
|
2.7
|
22.7
|
1.0
|
|
CD
|
A:GLU65
|
2.8
|
21.5
|
1.0
|
|
CG
|
A:ASP97
|
3.3
|
20.2
|
1.0
|
|
CG
|
A:ASP133
|
3.3
|
21.7
|
1.0
|
|
CD
|
A:GLU9
|
3.4
|
22.1
|
1.0
|
|
CG
|
A:ASP100
|
3.5
|
21.4
|
1.0
|
|
C
|
A:ILE98
|
3.6
|
21.2
|
1.0
|
|
N
|
A:ILE98
|
3.8
|
23.3
|
1.0
|
|
OE1
|
A:GLU9
|
3.8
|
19.3
|
1.0
|
|
OD2
|
A:ASP97
|
3.9
|
22.6
|
1.0
|
|
ND2
|
A:ASN101
|
3.9
|
23.7
|
1.0
|
|
CB
|
A:ASP133
|
4.0
|
19.7
|
1.0
|
|
OD2
|
A:ASP100
|
4.0
|
23.3
|
1.0
|
|
CA
|
A:CA404
|
4.1
|
20.5
|
1.0
|
|
N
|
A:ASP100
|
4.1
|
17.1
|
1.0
|
|
CA
|
A:ASP133
|
4.2
|
22.4
|
1.0
|
|
CG
|
A:GLU65
|
4.2
|
21.3
|
1.0
|
|
OD2
|
A:ASP133
|
4.3
|
23.5
|
1.0
|
|
NE
|
A:ARG64
|
4.3
|
24.2
|
1.0
|
|
CA
|
A:ILE98
|
4.3
|
22.1
|
1.0
|
|
CB
|
A:ASP97
|
4.5
|
18.7
|
1.0
|
|
CG1
|
A:ILE98
|
4.5
|
19.7
|
1.0
|
|
CA
|
A:ASP97
|
4.5
|
21.6
|
1.0
|
|
C
|
A:ASP97
|
4.6
|
21.6
|
1.0
|
|
N
|
A:ASN99
|
4.6
|
20.6
|
1.0
|
|
CG
|
A:GLU9
|
4.7
|
19.2
|
1.0
|
|
CB
|
A:ASP100
|
4.7
|
24.6
|
1.0
|
|
NH2
|
A:ARG64
|
4.8
|
22.1
|
1.0
|
|
CA
|
A:ASN99
|
4.8
|
17.3
|
1.0
|
|
CA
|
A:ASP100
|
4.9
|
17.5
|
1.0
|
|
N
|
A:ASP133
|
5.0
|
18.2
|
1.0
|
|
CB
|
A:ARG64
|
5.0
|
20.0
|
1.0
|
|
Calcium binding site 6 out
of 15 in 4zi8
Go back to
Calcium Binding Sites List in 4zi8
Calcium binding site 6 out
of 15 in the Structure of Mouse Clustered PCDHGC3 EC1-3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of Mouse Clustered PCDHGC3 EC1-3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca406
b:20.6
occ:1.00
|
O
|
A:ASN137
|
2.2
|
16.2
|
1.0
|
|
O
|
A:ASN101
|
2.3
|
19.4
|
1.0
|
|
OD2
|
A:ASP131
|
2.4
|
18.6
|
1.0
|
|
OD1
|
A:ASN99
|
2.4
|
20.6
|
1.0
|
|
OD2
|
A:ASP133
|
2.4
|
23.5
|
1.0
|
|
OD1
|
A:ASP131
|
2.5
|
21.2
|
1.0
|
|
OD2
|
A:ASP188
|
2.5
|
25.2
|
1.0
|
|
CG
|
A:ASP131
|
2.7
|
22.8
|
1.0
|
|
CG
|
A:ASP133
|
3.4
|
21.7
|
1.0
|
|
CG
|
A:ASP188
|
3.4
|
22.4
|
1.0
|
|
C
|
A:ASN137
|
3.5
|
17.1
|
1.0
|
|
CG
|
A:ASN99
|
3.5
|
21.0
|
1.0
|
|
C
|
A:ASN101
|
3.5
|
20.5
|
1.0
|
|
CB
|
A:ASP188
|
3.7
|
24.7
|
1.0
|
|
CB
|
A:ASP133
|
3.7
|
19.7
|
1.0
|
|
ND2
|
A:ASN99
|
4.0
|
18.8
|
1.0
|
|
CA
|
A:ASN137
|
4.3
|
19.6
|
1.0
|
|
CB
|
A:ASP131
|
4.3
|
22.2
|
1.0
|
|
CA
|
A:ASN101
|
4.3
|
20.5
|
1.0
|
|
CB
|
A:ASN137
|
4.3
|
22.5
|
1.0
|
|
N
|
A:ASN101
|
4.3
|
20.1
|
1.0
|
|
N
|
A:SER138
|
4.5
|
18.8
|
1.0
|
|
CB
|
A:ASN101
|
4.5
|
18.7
|
1.0
|
|
N
|
A:ASN102
|
4.5
|
24.8
|
1.0
|
|
OD1
|
A:ASP188
|
4.5
|
20.4
|
1.0
|
|
CD
|
A:ARG194
|
4.5
|
28.6
|
1.0
|
|
OD1
|
A:ASP133
|
4.6
|
20.7
|
1.0
|
|
CA
|
A:ASN102
|
4.7
|
27.1
|
1.0
|
|
C
|
A:ASN102
|
4.7
|
26.9
|
1.0
|
|
CA
|
A:SER138
|
4.7
|
20.4
|
1.0
|
|
CB
|
A:ASN99
|
4.7
|
16.4
|
1.0
|
|
CA
|
A:ASN99
|
4.8
|
17.3
|
1.0
|
|
N
|
A:ASP133
|
4.9
|
18.2
|
1.0
|
|
N
|
A:PRO103
|
4.9
|
27.3
|
1.0
|
|
CB
|
A:ARG194
|
4.9
|
23.3
|
1.0
|
|
CA
|
A:ASP133
|
4.9
|
22.4
|
1.0
|
|
CD
|
A:PRO103
|
5.0
|
30.9
|
1.0
|
|
Calcium binding site 7 out
of 15 in 4zi8
Go back to
Calcium Binding Sites List in 4zi8
Calcium binding site 7 out
of 15 in the Structure of Mouse Clustered PCDHGC3 EC1-3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of Mouse Clustered PCDHGC3 EC1-3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca407
b:30.1
occ:1.00
|
OE2
|
A:GLU283
|
2.2
|
31.4
|
1.0
|
|
OE2
|
A:GLU225
|
2.5
|
33.3
|
1.0
|
|
OE1
|
A:GLU283
|
2.5
|
36.7
|
1.0
|
|
OE1
|
A:GLU225
|
2.6
|
28.2
|
1.0
|
|
CD
|
A:GLU283
|
2.7
|
31.5
|
1.0
|
|
CD
|
A:GLU225
|
2.8
|
33.8
|
1.0
|
|
CA
|
A:CA408
|
3.8
|
31.7
|
1.0
|
|
CA
|
A:CA409
|
3.9
|
30.6
|
1.0
|
|
CG
|
A:GLU283
|
4.2
|
29.3
|
1.0
|
|
CG
|
A:GLU225
|
4.3
|
35.6
|
1.0
|
|
CB
|
A:PHE282
|
4.5
|
28.7
|
1.0
|
|
O
|
A:HOH581
|
4.5
|
32.3
|
1.0
|
|
N
|
A:PHE282
|
4.6
|
29.1
|
1.0
|
|
OD1
|
A:ASP281
|
4.6
|
30.6
|
1.0
|
|
OD1
|
A:ASP314
|
4.6
|
34.6
|
1.0
|
|
N
|
A:GLU283
|
4.7
|
29.1
|
1.0
|
|
CG
|
A:ASP281
|
4.9
|
30.6
|
1.0
|
|
OD2
|
A:ASP281
|
4.9
|
34.6
|
1.0
|
|
Calcium binding site 8 out
of 15 in 4zi8
Go back to
Calcium Binding Sites List in 4zi8
Calcium binding site 8 out
of 15 in the Structure of Mouse Clustered PCDHGC3 EC1-3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of Mouse Clustered PCDHGC3 EC1-3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca408
b:31.7
occ:1.00
|
OE2
|
A:GLU225
|
2.2
|
33.3
|
1.0
|
|
OD1
|
A:ASP314
|
2.2
|
34.6
|
1.0
|
|
O
|
A:ASP314
|
2.3
|
39.9
|
1.0
|
|
C
|
A:ASP314
|
3.3
|
44.1
|
1.0
|
|
CD
|
A:GLU225
|
3.3
|
33.8
|
1.0
|
|
CG
|
A:ASP314
|
3.4
|
45.6
|
1.0
|
|
CA
|
A:ASP314
|
3.8
|
41.0
|
1.0
|
|
CG
|
A:GLU225
|
3.8
|
35.6
|
1.0
|
|
CA
|
A:CA407
|
3.8
|
30.1
|
1.0
|
|
CB
|
A:ASP314
|
4.2
|
41.7
|
1.0
|
|
OXT
|
A:ASP314
|
4.3
|
48.9
|
1.0
|
|
O
|
A:HOH711
|
4.3
|
51.8
|
1.0
|
|
OE1
|
A:GLU225
|
4.3
|
28.2
|
1.0
|
|
OD2
|
A:ASP314
|
4.4
|
46.7
|
1.0
|
|
O
|
A:HOH601
|
4.5
|
51.8
|
1.0
|
|
OE2
|
A:GLU283
|
4.6
|
31.4
|
1.0
|
|
O
|
A:HOH581
|
5.0
|
32.3
|
1.0
|
|
Calcium binding site 9 out
of 15 in 4zi8
Go back to
Calcium Binding Sites List in 4zi8
Calcium binding site 9 out
of 15 in the Structure of Mouse Clustered PCDHGC3 EC1-3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Structure of Mouse Clustered PCDHGC3 EC1-3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca409
b:30.6
occ:1.00
|
OE1
|
A:GLU283
|
2.3
|
36.7
|
1.0
|
|
OD2
|
A:ASP281
|
2.5
|
34.6
|
1.0
|
|
OD1
|
A:ASP281
|
2.7
|
30.6
|
1.0
|
|
CG
|
A:ASP281
|
2.9
|
30.6
|
1.0
|
|
CD
|
A:GLU283
|
3.5
|
31.5
|
1.0
|
|
CA
|
A:CA407
|
3.9
|
30.1
|
1.0
|
|
CB
|
A:GLU283
|
4.0
|
28.7
|
1.0
|
|
CG
|
A:GLU283
|
4.2
|
29.3
|
1.0
|
|
OE2
|
A:GLU283
|
4.4
|
31.4
|
1.0
|
|
CB
|
A:ASP281
|
4.4
|
31.9
|
1.0
|
|
O
|
A:HOH673
|
4.7
|
61.5
|
1.0
|
|
N
|
A:GLU283
|
4.7
|
29.1
|
1.0
|
|
OD1
|
A:ASP284
|
4.9
|
43.2
|
1.0
|
|
CA
|
A:GLU283
|
4.9
|
30.1
|
1.0
|
|
OD2
|
A:ASP284
|
4.9
|
41.7
|
1.0
|
|
OE1
|
A:GLU225
|
4.9
|
28.2
|
1.0
|
|
NH1
|
A:ARG279
|
5.0
|
62.3
|
1.0
|
|
Calcium binding site 10 out
of 15 in 4zi8
Go back to
Calcium Binding Sites List in 4zi8
Calcium binding site 10 out
of 15 in the Structure of Mouse Clustered PCDHGC3 EC1-3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Structure of Mouse Clustered PCDHGC3 EC1-3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca401
b:18.5
occ:1.00
|
O
|
B:ASN101
|
2.3
|
17.0
|
1.0
|
|
OD1
|
B:ASN99
|
2.3
|
19.0
|
1.0
|
|
O
|
B:ASN137
|
2.3
|
16.8
|
1.0
|
|
OD2
|
B:ASP131
|
2.4
|
23.0
|
1.0
|
|
OD2
|
B:ASP188
|
2.5
|
21.2
|
1.0
|
|
OD2
|
B:ASP133
|
2.5
|
20.2
|
1.0
|
|
OD1
|
B:ASP131
|
2.5
|
21.2
|
1.0
|
|
CG
|
B:ASP131
|
2.8
|
23.8
|
1.0
|
|
CG
|
B:ASP188
|
3.4
|
17.6
|
1.0
|
|
CG
|
B:ASN99
|
3.4
|
18.4
|
1.0
|
|
CG
|
B:ASP133
|
3.4
|
20.0
|
1.0
|
|
C
|
B:ASN101
|
3.5
|
17.9
|
1.0
|
|
C
|
B:ASN137
|
3.5
|
18.9
|
1.0
|
|
CB
|
B:ASP188
|
3.7
|
20.8
|
1.0
|
|
CB
|
B:ASP133
|
3.7
|
17.1
|
1.0
|
|
ND2
|
B:ASN99
|
4.0
|
19.0
|
1.0
|
|
CA
|
B:ASN101
|
4.3
|
17.9
|
1.0
|
|
CB
|
B:ASP131
|
4.3
|
22.0
|
1.0
|
|
CA
|
B:ASN137
|
4.3
|
17.1
|
1.0
|
|
N
|
B:ASN101
|
4.3
|
17.6
|
1.0
|
|
CB
|
B:ASN137
|
4.3
|
18.4
|
1.0
|
|
CB
|
B:ASN101
|
4.4
|
19.5
|
1.0
|
|
OD1
|
B:ASP188
|
4.5
|
17.9
|
1.0
|
|
N
|
B:SER138
|
4.5
|
20.4
|
1.0
|
|
N
|
B:ASN102
|
4.5
|
21.8
|
1.0
|
|
OD1
|
B:ASP133
|
4.6
|
21.7
|
1.0
|
|
CA
|
B:SER138
|
4.6
|
20.1
|
1.0
|
|
CB
|
B:ASN99
|
4.7
|
17.9
|
1.0
|
|
CD
|
B:ARG194
|
4.7
|
23.2
|
1.0
|
|
C
|
B:ASN102
|
4.7
|
19.2
|
1.0
|
|
CA
|
B:ASN102
|
4.8
|
23.5
|
1.0
|
|
CA
|
B:ASN99
|
4.8
|
17.3
|
1.0
|
|
N
|
B:ASP133
|
4.8
|
17.6
|
1.0
|
|
CD
|
B:PRO103
|
4.9
|
20.5
|
1.0
|
|
CA
|
B:ASP133
|
4.9
|
21.9
|
1.0
|
|
N
|
B:PRO103
|
4.9
|
21.9
|
1.0
|
|
C
|
B:ASN99
|
5.0
|
20.2
|
1.0
|
|
Reference:
J.M.Nicoludis,
S.Y.Lau,
C.P.Scharfe,
D.S.Marks,
W.A.Weihofen,
R.Gaudet.
Structure and Sequence Analyses of Clustered Protocadherins Reveal Antiparallel Interactions That Mediate Homophilic Specificity. Structure V. 23 2087 2015.
ISSN: ISSN 0969-2126
PubMed: 26481813
DOI: 10.1016/J.STR.2015.09.005
Page generated: Sun Jul 14 15:44:50 2024
|
