Calcium in PDB 5a08: X-Ray Structure of the Mannosyltransferase KTR4P From S. Cerevisiae

The structure of X-Ray Structure of the Mannosyltransferase KTR4P From S. Cerevisiae, PDB code: 5a08 was solved by D.D.D.Possner, J.E.Guy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	85.74 / 2.21
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.198, 102.368, 156.908, 90.00, 90.00, 90.00
R / Rfree (%)	16.311 / 20.273

The binding sites of Calcium atom in the X-Ray Structure of the Mannosyltransferase KTR4P From S. Cerevisiae (pdb code 5a08). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the X-Ray Structure of the Mannosyltransferase KTR4P From S. Cerevisiae, PDB code: 5a08:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the X-Ray Structure of the Mannosyltransferase KTR4P From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of the Mannosyltransferase KTR4P From S. Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1466 b:56.2 occ:1.00 O B:HOH2002 2.0 36.4 1.0 O B:HOH2001 2.2 37.0 1.0 OD1 B:ASP77 2.5 43.9 1.0 OD2 B:ASP81 2.6 29.2 1.0 OD1 B:ASP81 2.8 26.4 1.0 OD2 B:ASP77 2.9 43.8 1.0 CG B:ASP81 3.1 24.8 1.0 CG B:ASP77 3.1 37.4 1.0 CB B:ASP81 4.5 22.8 1.0 O B:ASP77 4.6 25.6 1.0 CB B:ASP77 4.6 32.6 1.0

Calcium binding site 2 out of 3 in the X-Ray Structure of the Mannosyltransferase KTR4P From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of X-Ray Structure of the Mannosyltransferase KTR4P From S. Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1467 b:20.6 occ:1.00 O B:HOH2171 2.1 26.2 1.0 OE1 B:GLU311 2.2 20.0 1.0 OD1 B:ASP308 2.3 21.9 1.0 O B:HOH2172 2.5 17.1 1.0 CD B:GLU311 3.2 19.2 1.0 CG B:ASP308 3.4 20.0 1.0 OE2 B:GLU311 3.4 17.5 1.0 CA B:CA1468 3.6 5.5 1.0 O B:HOH2170 3.9 19.5 1.0 OD2 B:ASP308 4.1 24.7 1.0 O B:HOH2169 4.3 27.7 1.0 CA B:ASP308 4.3 19.8 1.0 CB B:ASP308 4.4 20.1 1.0 CG B:GLU311 4.6 18.8 1.0 N B:ASP308 4.7 18.3 1.0 CB B:GLU311 4.9 17.8 1.0

Calcium binding site 3 out of 3 in the X-Ray Structure of the Mannosyltransferase KTR4P From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of X-Ray Structure of the Mannosyltransferase KTR4P From S. Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1468 b:5.5 occ:1.00 OE2 B:GLU311 1.6 17.5 1.0 NE2 B:HIS84 1.8 16.7 1.0 CE1 B:HIS84 2.7 18.5 1.0 CD B:GLU311 2.8 19.2 1.0 CD2 B:HIS84 2.9 18.3 1.0 OE1 B:GLU311 3.3 20.0 1.0 CA B:CA1467 3.6 20.6 1.0 CG B:MET307 3.9 29.6 1.0 ND1 B:HIS84 3.9 18.4 1.0 CG B:HIS84 4.0 16.8 1.0 CG B:GLU311 4.1 18.8 1.0 CE B:MET307 4.5 32.7 1.0 SD B:MET307 4.8 33.5 1.0 O B:HOH2172 4.9 17.1 1.0 OD1 B:ASP308 5.0 21.9 1.0

D.D.D.Possner, M.Claesson, J.E.Guy. Structure of the Glycosyltransferase KTR4P From Saccharomyces Cerevisiae Plos One V. 10 36239 2015.
ISSN: ISSN 1932-6203
PubMed: 26296208
DOI: 10.1371/JOURNAL.PONE.013623