Calcium in PDB 5a1m: Crystal Structure of Calcium-Bound Human Adseverin Domain A3

The structure of Crystal Structure of Calcium-Bound Human Adseverin Domain A3, PDB code: 5a1m was solved by S.Chumnarnsilpa, R.C.Robinson, J.M.Grimes, C.Leyrat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.47 / 1.81
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	92.510, 92.510, 68.910, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 18.94

The binding sites of Calcium atom in the Crystal Structure of Calcium-Bound Human Adseverin Domain A3 (pdb code 5a1m). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Calcium-Bound Human Adseverin Domain A3, PDB code: 5a1m:

Calcium binding site 1 out of 1 in the Crystal Structure of Calcium-Bound Human Adseverin Domain A3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Calcium-Bound Human Adseverin Domain A3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1351 b:16.0 occ:1.00 O A:GLU280 2.3 15.5 1.0 O A:HOH2031 2.4 16.4 1.0 OE2 A:GLU305 2.4 15.3 1.0 OE1 A:GLU305 2.4 14.8 1.0 O A:HOH2068 2.4 15.1 1.0 OE1 A:GLU281 2.4 16.3 1.0 O A:HOH2069 2.5 16.9 1.0 CD A:GLU305 2.7 21.7 1.0 CD A:GLU281 3.4 23.2 1.0 C A:GLU280 3.4 15.2 1.0 OE2 A:GLU281 3.8 17.6 1.0 CA A:GLU281 4.2 10.3 1.0 N A:GLU281 4.2 11.4 1.0 CG A:GLU305 4.2 15.2 1.0 OG A:SER255 4.2 15.9 1.0 CB A:GLU280 4.3 15.3 1.0 ND2 A:ASN302 4.3 13.1 1.0 CA A:GLU280 4.4 13.2 1.0 O A:HOH2085 4.5 23.4 1.0 OD1 A:ASP256 4.5 20.3 1.0 CG A:GLU281 4.5 15.2 1.0 CA A:ALA301 4.6 13.2 1.0 O A:HOH2128 4.7 29.1 1.0 CB A:GLU281 4.7 11.5 1.0 N A:ASN302 4.7 13.1 1.0 CB A:ALA257 4.7 17.2 1.0 O A:HOH2152 4.8 46.0 1.0 O A:ASP300 4.9 18.1 1.0 O A:HOH2151 4.9 49.5 1.0 N A:ALA257 4.9 16.0 1.0 CG A:ASN302 5.0 21.4 1.0

S.Chumnarnsilpa, R.C.Robinson, J.M.Grimes, C.Leyrat. Calcium-Controlled Conformational Choreography in the N- Terminal Half of Adseverin. Nat.Commun. V. 6 8254 2015.
ISSN: ISSN 2041-1723
PubMed: 26365202
DOI: 10.1038/NCOMMS9254