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Calcium in PDB 5anz: Crystal Structure of SLTB3 From Pseudomonas Aeruginosa.

Protein crystallography data

The structure of Crystal Structure of SLTB3 From Pseudomonas Aeruginosa., PDB code: 5anz was solved by T.Dominguez-Gil, J.A.Hermoso, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.168 / 1.61
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 112.281, 61.840, 50.630, 90.00, 90.00, 90.00
R / Rfree (%) 17.89 / 20.36

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of SLTB3 From Pseudomonas Aeruginosa. (pdb code 5anz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of SLTB3 From Pseudomonas Aeruginosa., PDB code: 5anz:

Calcium binding site 1 out of 1 in 5anz

Go back to Calcium Binding Sites List in 5anz
Calcium binding site 1 out of 1 in the Crystal Structure of SLTB3 From Pseudomonas Aeruginosa.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of SLTB3 From Pseudomonas Aeruginosa. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:24.7
occ:1.00
O A:LYS225 2.3 26.3 1.0
OD1 A:ASP221 2.3 31.9 1.0
OD1 A:ASP219 2.4 28.2 1.0
O A:HOH2134 2.4 26.8 1.0
OD1 A:ASP223 2.4 28.4 1.0
OD2 A:ASP234 2.4 21.9 1.0
OD1 A:ASP234 2.8 25.4 1.0
CG A:ASP234 3.0 25.0 1.0
CG A:ASP223 3.4 31.8 1.0
CG A:ASP219 3.4 30.2 1.0
CG A:ASP221 3.4 45.6 1.0
C A:LYS225 3.5 23.2 1.0
OD2 A:ASP223 3.8 32.4 1.0
OD2 A:ASP221 3.9 61.6 1.0
N A:LYS225 4.1 26.0 1.0
CA A:ASP219 4.2 24.1 1.0
OD2 A:ASP219 4.2 30.9 1.0
CB A:ASP219 4.2 26.0 1.0
CA A:LYS225 4.2 24.8 1.0
N A:ASP221 4.3 28.6 1.0
CB A:LYS225 4.4 25.5 1.0
N A:PHE220 4.4 24.4 1.0
N A:ASP223 4.4 32.0 1.0
CB A:ASP234 4.5 20.5 1.0
N A:ASP227 4.5 19.8 1.0
C A:ASP219 4.5 26.4 1.0
N A:ARG226 4.5 23.4 1.0
N A:GLY222 4.6 36.3 1.0
CB A:ASP223 4.6 30.1 1.0
CB A:ASP221 4.6 36.1 1.0
CA A:ARG226 4.7 21.5 0.2
CA A:ARG226 4.7 20.6 0.8
OG A:SER231 4.9 31.6 1.0
CA A:ASP221 4.9 30.2 1.0
N A:GLY224 4.9 34.0 1.0
CB A:ASP227 4.9 20.4 1.0
CA A:ASP223 5.0 31.6 1.0

Reference:

M.Lee, T.Dominguez-Gil, D.Hesek, K.V.Mahasenan, E.Lastochkin, J.A.Hermoso, S.Mobashery. Turnover of Bacterial Cell Wall By SLTB3, A Multidomain Lytic Transglycosylase of Pseudomonas Aeruginosa. Acs Chem.Biol. V. 11 1525 2016.
ISSN: ISSN 1554-8929
PubMed: 27035839
DOI: 10.1021/ACSCHEMBIO.6B00194
Page generated: Sat Dec 12 05:17:37 2020

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