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Calcium in PDB 5b7x: uc(Nmr) Solution Structure of An Ef-Hand Calcium Binding Protein (EHCABP6) From Entamoeba Histolytica

Calcium Binding Sites:

The binding sites of Calcium atom in the uc(Nmr) Solution Structure of An Ef-Hand Calcium Binding Protein (EHCABP6) From Entamoeba Histolytica (pdb code 5b7x). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the uc(Nmr) Solution Structure of An Ef-Hand Calcium Binding Protein (EHCABP6) From Entamoeba Histolytica, PDB code: 5b7x:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 5b7x

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Calcium binding site 1 out of 2 in the uc(Nmr) Solution Structure of An Ef-Hand Calcium Binding Protein (EHCABP6) From Entamoeba Histolytica


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of uc(Nmr) Solution Structure of An Ef-Hand Calcium Binding Protein (EHCABP6) From Entamoeba Histolytica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:35.3
occ:1.00
HE22 A:GLN34 2.1 64.0 1.0
HA A:ASP23 2.4 0.5 1.0
OD2 A:ASP27 2.5 21.1 1.0
OE1 A:GLN34 2.6 24.4 1.0
OD2 A:ASP25 2.7 14.2 1.0
OD1 A:ASP25 2.8 15.6 1.0
NE2 A:GLN34 2.9 5.2 1.0
CG A:ASP23 3.0 13.3 1.0
CG A:ASP27 3.0 10.2 1.0
OD1 A:ASP27 3.0 31.2 1.0
O A:LYS29 3.0 23.1 1.0
OD2 A:ASP23 3.0 64.4 1.0
OD1 A:ASP23 3.1 35.3 1.0
CD A:GLN34 3.1 55.1 1.0
CG A:ASP25 3.1 33.1 1.0
CA A:ASP23 3.4 72.5 1.0
CB A:ASP23 3.7 14.4 1.0
H A:ASP27 3.7 2.2 1.0
HE21 A:GLN34 3.8 2.2 1.0
HD2 A:TYR22 3.8 34.4 1.0
HE2 A:TYR22 3.9 75.2 1.0
HA A:ILE30 3.9 13.4 1.0
HG12 A:ILE30 4.0 2.5 1.0
O A:ASP23 4.1 60.0 1.0
C A:ASP23 4.1 73.5 1.0
O A:TYR22 4.2 4.2 1.0
C A:LYS29 4.3 70.3 1.0
HB2 A:ASP23 4.3 1.4 1.0
CB A:ASP27 4.3 63.2 1.0
N A:ASP23 4.4 4.3 1.0
H A:GLY28 4.4 2.1 1.0
HB3 A:ASP27 4.4 11.4 1.0
H A:TYR26 4.4 20.1 1.0
H A:LYS29 4.4 51.4 1.0
CD2 A:TYR22 4.5 43.1 1.0
CE2 A:TYR22 4.5 63.2 1.0
HB3 A:ASP23 4.6 63.4 1.0
CG A:GLN34 4.6 53.5 1.0
N A:ASP27 4.6 43.5 1.0
CB A:ASP25 4.6 71.0 1.0
C A:TYR22 4.7 13.2 1.0
H A:ASP25 4.7 32.0 1.0
HG21 A:ILE30 4.8 21.4 1.0
CA A:ILE30 4.9 24.3 1.0
N A:LYS29 5.0 24.0 1.0
HG3 A:LYS29 5.0 4.2 1.0
HG2 A:GLN34 5.0 20.2 1.0
CG1 A:ILE30 5.0 50.3 1.0
HD2 A:LYS29 5.0 42.3 1.0

Calcium binding site 2 out of 2 in 5b7x

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Calcium binding site 2 out of 2 in the uc(Nmr) Solution Structure of An Ef-Hand Calcium Binding Protein (EHCABP6) From Entamoeba Histolytica


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of uc(Nmr) Solution Structure of An Ef-Hand Calcium Binding Protein (EHCABP6) From Entamoeba Histolytica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:62.4
occ:1.00
HG22 A:ILE103 2.0 75.1 1.0
OD2 A:ASP98 2.1 65.4 1.0
HG21 A:ILE103 2.4 31.2 1.0
CG2 A:ILE103 2.5 41.3 1.0
HA A:LYS99 2.6 22.2 1.0
HG23 A:ILE103 2.8 63.2 1.0
CG A:ASP98 2.9 34.4 1.0
OD1 A:ASP96 3.0 12.5 1.0
N A:LYS99 3.4 70.3 1.0
C A:ASP98 3.4 1.2 1.0
OD1 A:ASP98 3.4 61.1 1.0
O A:ASP98 3.5 31.1 1.0
CA A:LYS99 3.5 41.3 1.0
H A:ASP100 3.7 50.2 1.0
HB3 A:ASP98 3.8 71.4 1.0
CB A:ASP98 3.8 74.2 1.0
CG A:ASP96 3.8 60.2 1.0
OD2 A:ASP96 3.9 0.0 1.0
H A:LYS99 3.9 43.5 1.0
CB A:ILE103 3.9 41.2 1.0
OD2 A:ASP100 3.9 53.5 1.0
HB A:ILE103 4.1 60.0 1.0
CG A:ASP107 4.1 5.5 1.0
OD1 A:ASP107 4.2 54.5 1.0
OD2 A:ASP107 4.2 4.3 1.0
HB3 A:ASP107 4.2 63.0 1.0
O A:LYS102 4.3 33.0 1.0
CA A:ASP98 4.3 25.3 1.0
N A:ASP100 4.3 4.1 1.0
HA A:ILE103 4.3 54.4 1.0
C A:LYS99 4.3 0.0 1.0
HB2 A:LYS99 4.4 53.1 1.0
OD1 A:ASP100 4.4 43.3 1.0
CG A:ASP100 4.4 55.2 1.0
CB A:LYS99 4.5 5.1 1.0
HD11 A:ILE103 4.6 11.3 1.0
CB A:ASP107 4.6 10.1 1.0
HD12 A:ILE103 4.7 42.1 1.0
HB2 A:ASP107 4.7 23.5 1.0
CA A:ILE103 4.7 42.1 1.0
HD21 A:ASN111 4.7 72.3 1.0
HB2 A:ASP98 4.8 42.4 1.0
CG1 A:ILE103 4.9 40.3 1.0
CD1 A:ILE103 4.9 21.5 1.0
HG2 A:LYS99 5.0 4.2 1.0

Reference:

D.Verma, A.Murmu, A.Bhattacharya, K.V.Chary. An Unusual Nuclear Localized CA2+-Binding Protein From Entamoeba Histolytica That Exhibits Gtpase Activity To Be Published.
Page generated: Wed Jul 9 04:24:47 2025

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