Calcium in PDB 5c0j: Hla-A02 Carrying Rqfgpdwiva

The structure of Hla-A02 Carrying Rqfgpdwiva, PDB code: 5c0j was solved by P.J.Rizkallah, A.M.Bulek, D.K.Cole, A.K.Sewell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.83 / 1.64
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	56.290, 80.130, 56.950, 90.00, 115.81, 90.00
R / Rfree (%)	18 / 21.4

The binding sites of Calcium atom in the Hla-A02 Carrying Rqfgpdwiva (pdb code 5c0j). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Hla-A02 Carrying Rqfgpdwiva, PDB code: 5c0j:

Calcium binding site 1 out of 1 in the Hla-A02 Carrying Rqfgpdwiva


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Hla-A02 Carrying Rqfgpdwiva within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca101 b:55.8 occ:1.00 O B:HOH230 2.3 39.5 1.0 ND2 B:ASN83 2.4 34.2 1.0 O B:HIS84 2.4 29.3 1.0 O B:LEU87 2.5 43.5 1.0 O B:HOH228 2.5 43.3 1.0 O B:HOH220 2.6 37.3 1.0 CG B:ASN83 3.2 35.6 1.0 C B:HIS84 3.4 28.6 1.0 OD1 B:ASN83 3.4 42.9 1.0 C B:LEU87 3.6 43.8 1.0 N B:HIS84 3.9 28.4 1.0 CA B:VAL85 4.1 30.6 1.0 N B:VAL85 4.2 27.9 1.0 CB B:LEU87 4.2 37.5 1.0 N B:LEU87 4.2 36.2 1.0 CA B:LEU87 4.2 39.9 1.0 CA B:HIS84 4.3 26.2 1.0 C B:VAL85 4.4 31.3 1.0 O B:VAL85 4.5 33.2 1.0 CB B:ASN83 4.6 33.2 1.0 N B:SER88 4.7 48.4 1.0 C B:ASN83 4.7 27.9 1.0 C B:SER88 4.7 54.4 1.0 O B:SER88 4.9 59.1 1.0 CA B:ASN83 4.9 29.9 1.0 CA B:SER88 5.0 53.7 1.0

D.K.Cole, A.M.Bulek, G.Dolton, A.J.Schauenberg, B.Szomolay, W.Rittase, A.Trimby, P.Jothikumar, A.Fuller, A.Skowera, J.Rossjohn, C.Zhu, J.J.Miles, M.Peakman, L.Wooldridge, P.J.Rizkallah, A.K.Sewell. Hotspot Autoimmune T Cell Receptor Binding Underlies Pathogen and Insulin Peptide Cross-Reactivity. J.Clin.Invest. V. 126 2191 2016.
ISSN: ISSN 0021-9738
PubMed: 27183389
DOI: 10.1172/JCI85679