Calcium in PDB 5cd6: Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution

The structure of Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution, PDB code: 5cd6 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.72 / 2.26
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	103.480, 167.480, 312.230, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 20.8

The binding sites of Calcium atom in the Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution (pdb code 5cd6). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution, PDB code: 5cd6:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca701 b:86.6 occ:1.00 O A:THR233 2.5 46.2 1.0 OD1 A:ASP232 2.8 71.1 1.0 C A:THR233 3.6 45.1 1.0 CG A:ASP232 3.8 67.5 1.0 OD2 A:ASP232 4.0 75.6 1.0 N A:THR233 4.2 42.3 1.0 OE2 A:GLU239 4.3 72.8 1.0 CA A:THR233 4.5 41.7 1.0 N A:ILE234 4.5 41.5 1.0 OE1 A:GLU239 4.5 45.5 1.0 CG2 A:ILE234 4.6 44.8 1.0 CA A:ILE234 4.6 41.8 1.0 CD A:GLU239 4.9 69.9 1.0 CB A:THR233 4.9 53.4 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca702 b:76.0 occ:1.00 O A:HOH885 2.5 34.5 1.0 O A:HOH1185 2.7 48.6 1.0 OD1 A:ASP306 2.9 33.7 1.0 OE1 A:GLN308 2.9 78.2 1.0 O A:HOH1186 3.1 58.6 1.0 O A:HOH941 3.3 64.2 1.0 OD2 A:ASP306 3.5 47.1 1.0 CG A:ASP306 3.5 35.1 1.0 CD A:GLN308 4.0 79.2 1.0 O A:ARG110 4.1 27.6 1.0 O A:HOH877 4.3 41.2 1.0 OG1 A:THR304 4.3 34.0 1.0 O A:PRO111 4.3 26.1 1.0 CA A:PRO111 4.4 23.6 1.0 O B:HOH1023 4.5 37.2 1.0 O A:HOH1067 4.5 35.0 1.0 CD A:PRO305 4.6 26.7 1.0 O A:HOH1312 4.7 54.5 1.0 C A:PRO111 4.7 28.0 1.0 NE2 A:GLN308 4.7 78.2 1.0 CG A:PRO305 4.8 30.8 1.0 C A:ARG110 4.9 29.1 1.0 CG A:GLN308 4.9 45.4 1.0 CB A:ASP306 5.0 29.2 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca701 b:66.4 occ:1.00 OD1 B:ASP306 2.5 33.6 1.0 O B:HOH912 2.6 43.9 1.0 O B:HOH1066 2.6 43.9 1.0 OD2 B:ASP306 2.9 44.4 1.0 CG B:ASP306 3.1 33.4 1.0 O B:HOH1319 3.6 68.8 1.0 O B:HOH1229 3.9 43.2 1.0 O B:HOH1340 4.1 45.8 1.0 OG1 B:THR304 4.3 30.0 1.0 CG B:GLN308 4.4 43.5 1.0 O A:HOH968 4.4 44.5 1.0 CB B:ASP306 4.5 30.8 1.0 O B:ARG110 4.6 30.6 1.0 O B:HOH1171 4.6 33.5 1.0 CB B:GLN308 4.7 32.0 1.0 O B:PRO111 4.7 24.6 1.0 CD B:PRO305 4.8 29.8 1.0 CA B:PRO111 4.8 26.7 1.0 CG B:PRO305 4.9 34.8 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Tpr-Domain Containing Protein (BDI_1685) From Parabacteroides Distasonis Atcc 8503 at 2.26 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca701 b:70.7 occ:1.00 O C:HOH837 2.4 32.5 1.0 OD1 C:ASP306 2.5 37.2 1.0 O C:HOH1041 2.5 46.3 1.0 O C:HOH1199 3.0 50.0 1.0 OD2 C:ASP306 3.1 46.4 1.0 CG C:ASP306 3.2 35.0 1.0 OG1 C:THR304 4.2 25.9 1.0 O C:HOH1303 4.2 52.6 1.0 O C:ARG110 4.5 31.5 1.0 O C:PRO111 4.6 30.7 1.0 CG C:GLN308 4.6 53.5 1.0 CB C:ASP306 4.6 28.9 1.0 O C:HOH1168 4.7 37.3 1.0 CD C:PRO305 4.7 27.6 1.0 CA C:PRO111 4.7 28.0 1.0 CG C:PRO305 4.8 31.6 1.0 CB C:GLN308 4.8 33.8 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.