Calcium in PDB 5ce3: The Yersinia Yopo - Actin Complex with Mgadp

The structure of The Yersinia Yopo - Actin Complex with Mgadp, PDB code: 5ce3 was solved by W.L.Lee, P.Singaravelu, J.M.Grimes, R.C.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	114.60 / 2.93
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	108.730, 121.750, 118.580, 90.00, 104.88, 90.00
R / Rfree (%)	19.6 / 24

The structure of The Yersinia Yopo - Actin Complex with Mgadp also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Calcium atom in the The Yersinia Yopo - Actin Complex with Mgadp (pdb code 5ce3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the The Yersinia Yopo - Actin Complex with Mgadp, PDB code: 5ce3:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the The Yersinia Yopo - Actin Complex with Mgadp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Yersinia Yopo - Actin Complex with Mgadp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:59.7 occ:1.00 O A:HOH501 2.2 61.7 1.0 O1B A:ATP401 2.5 50.5 1.0 O A:HOH502 2.6 75.1 1.0 O3G A:ATP401 2.6 51.6 1.0 O A:HOH503 2.7 63.7 1.0 OE1 A:GLN137 3.4 67.8 1.0 PG A:ATP401 3.5 52.0 1.0 O1G A:ATP401 3.6 52.7 1.0 PB A:ATP401 3.8 50.9 1.0 CD A:GLN137 4.0 64.7 1.0 O3B A:ATP401 4.1 51.2 1.0 OD1 A:ASP11 4.2 68.5 1.0 O1A A:ATP401 4.4 48.5 1.0 O3A A:ATP401 4.4 48.5 1.0 CA A:GLY13 4.5 66.2 1.0 NE2 A:GLN137 4.6 63.2 1.0 OD2 A:ASP154 4.6 78.5 1.0 NZ A:LYS18 4.6 56.6 1.0 OD2 A:ASP11 4.6 67.5 1.0 OD1 A:ASP154 4.8 81.4 1.0 CG A:GLN137 4.9 66.8 1.0 CG A:ASP11 4.9 66.9 1.0 O2G A:ATP401 4.9 52.4 1.0 PA A:ATP401 5.0 53.2 1.0 CG A:ASP154 5.0 76.3 1.0 O2B A:ATP401 5.0 51.7 1.0

Calcium binding site 2 out of 2 in the The Yersinia Yopo - Actin Complex with Mgadp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Yersinia Yopo - Actin Complex with Mgadp within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca402 b:66.5 occ:1.00 O3G C:ATP401 2.4 52.1 1.0 O C:HOH501 2.4 47.1 1.0 O1B C:ATP401 2.7 54.0 1.0 OE1 C:GLN137 3.3 67.0 1.0 PG C:ATP401 3.5 51.1 1.0 O1G C:ATP401 3.7 49.7 1.0 PB C:ATP401 3.9 49.6 1.0 CD C:GLN137 3.9 65.3 1.0 O3B C:ATP401 4.1 50.7 1.0 OD1 C:ASP11 4.2 72.5 1.0 CA C:GLY13 4.4 67.0 1.0 NE2 C:GLN137 4.4 67.5 1.0 O1A C:ATP401 4.6 56.8 1.0 OD2 C:ASP154 4.6 68.5 1.0 NZ C:LYS18 4.6 58.6 1.0 O3A C:ATP401 4.7 51.9 1.0 OD2 C:ASP11 4.7 63.5 1.0 CG C:GLN137 4.8 64.8 1.0 O2G C:ATP401 4.8 48.8 1.0 CG C:ASP11 4.9 67.4 1.0 OD1 C:ASP154 4.9 73.4 1.0 O C:ASN12 5.0 70.3 1.0

W.L.Lee, J.M.Grimes, R.C.Robinson. The Yersinia Yopo - Actin Complex with Mgadp To Be Published.