Calcium in PDB 5cy4: Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
Protein crystallography data
The structure of Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii, PDB code: 5cy4
was solved by
Seattle Structural Genomics Center For Infectious Disease (Ssgcid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.49 /
2.25
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
92.710,
102.880,
184.870,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.9 /
20.2
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
(pdb code 5cy4). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the
Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii, PDB code: 5cy4:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 14 in 5cy4
Go back to
Calcium Binding Sites List in 5cy4
Calcium binding site 1 out
of 14 in the Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca201
b:41.4
occ:1.00
|
OE2
|
A:GLU15
|
2.4
|
46.5
|
1.0
|
O
|
A:HOH403
|
2.5
|
42.8
|
1.0
|
O
|
A:HOH385
|
2.6
|
54.4
|
1.0
|
O
|
A:LEU14
|
2.6
|
34.6
|
1.0
|
OD2
|
A:ASP13
|
2.6
|
30.3
|
1.0
|
O
|
A:HOH328
|
2.7
|
42.4
|
1.0
|
OD1
|
A:ASP13
|
2.7
|
25.4
|
1.0
|
CG
|
A:ASP13
|
3.0
|
26.9
|
1.0
|
CD
|
A:GLU15
|
3.4
|
44.3
|
1.0
|
C
|
A:LEU14
|
3.6
|
29.4
|
1.0
|
OD2
|
A:ASP164
|
4.1
|
72.4
|
1.0
|
O
|
A:HOH321
|
4.1
|
40.4
|
1.0
|
OE1
|
A:GLU15
|
4.2
|
48.4
|
1.0
|
CA
|
A:CA202
|
4.2
|
34.6
|
1.0
|
CG
|
A:ASP164
|
4.2
|
54.8
|
1.0
|
N
|
A:LEU14
|
4.3
|
25.5
|
1.0
|
CG
|
A:GLU15
|
4.3
|
38.0
|
1.0
|
O
|
A:HOH393
|
4.4
|
62.6
|
1.0
|
N
|
A:GLU15
|
4.4
|
26.8
|
1.0
|
CA
|
A:GLU15
|
4.5
|
26.6
|
1.0
|
OD1
|
A:ASP164
|
4.5
|
52.7
|
1.0
|
CB
|
A:ASP13
|
4.5
|
25.4
|
1.0
|
CA
|
A:LEU14
|
4.6
|
27.6
|
1.0
|
CB
|
A:ASP164
|
4.7
|
37.2
|
1.0
|
O
|
A:HOH345
|
4.7
|
45.9
|
1.0
|
O
|
A:HOH368
|
4.9
|
38.4
|
1.0
|
OD1
|
A:ASP113
|
5.0
|
36.5
|
1.0
|
C
|
A:ASP13
|
5.0
|
28.1
|
1.0
|
|
Calcium binding site 2 out
of 14 in 5cy4
Go back to
Calcium Binding Sites List in 5cy4
Calcium binding site 2 out
of 14 in the Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:34.6
occ:1.00
|
O
|
A:HOH345
|
2.3
|
45.9
|
1.0
|
O
|
A:HOH321
|
2.4
|
40.4
|
1.0
|
O
|
A:ASN108
|
2.4
|
26.5
|
1.0
|
OD1
|
A:ASP13
|
2.5
|
25.4
|
1.0
|
O
|
A:HOH316
|
2.5
|
23.5
|
1.0
|
OD2
|
A:ASP113
|
2.5
|
40.0
|
1.0
|
O
|
A:HOH328
|
2.8
|
42.4
|
1.0
|
O
|
A:HOH385
|
3.4
|
54.4
|
1.0
|
CG
|
A:ASP113
|
3.4
|
34.7
|
1.0
|
OD1
|
A:ASP113
|
3.6
|
36.5
|
1.0
|
C
|
A:ASN108
|
3.6
|
27.7
|
1.0
|
CG
|
A:ASP13
|
3.7
|
26.9
|
1.0
|
O
|
A:HOH306
|
4.0
|
38.3
|
1.0
|
O
|
A:SER109
|
4.1
|
32.3
|
1.0
|
OD1
|
A:ASP164
|
4.1
|
52.7
|
1.0
|
CA
|
A:CA201
|
4.2
|
41.4
|
1.0
|
N
|
A:ASN108
|
4.2
|
27.9
|
1.0
|
CB
|
A:ASP13
|
4.3
|
25.4
|
1.0
|
CA
|
A:ASN108
|
4.4
|
27.8
|
1.0
|
C
|
A:SER109
|
4.4
|
30.2
|
1.0
|
CA
|
A:ASP13
|
4.4
|
30.2
|
1.0
|
O
|
A:HOH405
|
4.5
|
51.2
|
1.0
|
N
|
A:SER109
|
4.6
|
28.8
|
1.0
|
O
|
A:ILE12
|
4.6
|
24.0
|
1.0
|
CB
|
A:SER109
|
4.6
|
42.2
|
1.0
|
OD2
|
A:ASP13
|
4.6
|
30.3
|
1.0
|
CB
|
A:ASN108
|
4.7
|
28.5
|
1.0
|
CA
|
A:SER109
|
4.8
|
33.8
|
1.0
|
CB
|
A:ASP113
|
4.8
|
27.9
|
1.0
|
N
|
A:LEU14
|
4.8
|
25.5
|
1.0
|
CG
|
A:ASP164
|
5.0
|
54.8
|
1.0
|
|
Calcium binding site 3 out
of 14 in 5cy4
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Calcium Binding Sites List in 5cy4
Calcium binding site 3 out
of 14 in the Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca203
b:35.9
occ:1.00
|
NZ
|
A:LYS173
|
3.2
|
30.0
|
1.0
|
N
|
A:VAL40
|
3.3
|
35.1
|
1.0
|
CA
|
A:ASN39
|
3.8
|
28.8
|
1.0
|
O
|
A:LEU38
|
3.9
|
29.5
|
1.0
|
CB
|
A:VAL40
|
4.1
|
28.5
|
1.0
|
CG2
|
A:VAL40
|
4.1
|
22.3
|
1.0
|
C
|
A:ASN39
|
4.1
|
32.1
|
1.0
|
CA
|
A:VAL40
|
4.3
|
31.6
|
1.0
|
CE
|
A:LYS173
|
4.4
|
32.7
|
1.0
|
OD1
|
A:ASN39
|
4.5
|
36.5
|
1.0
|
CB
|
A:ASN39
|
4.7
|
30.0
|
1.0
|
C
|
A:LEU38
|
4.7
|
33.7
|
1.0
|
N
|
A:ASN39
|
4.8
|
30.6
|
1.0
|
O
|
A:VAL40
|
4.9
|
32.3
|
1.0
|
|
Calcium binding site 4 out
of 14 in 5cy4
Go back to
Calcium Binding Sites List in 5cy4
Calcium binding site 4 out
of 14 in the Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca201
b:66.5
occ:1.00
|
O
|
B:HOH314
|
2.4
|
55.6
|
1.0
|
O
|
B:HOH377
|
2.5
|
44.0
|
1.0
|
O
|
B:LEU14
|
2.6
|
36.0
|
1.0
|
O
|
B:HOH318
|
2.6
|
40.8
|
1.0
|
OD1
|
B:ASP13
|
2.6
|
34.7
|
1.0
|
OE2
|
B:GLU15
|
2.8
|
49.6
|
1.0
|
OD2
|
B:ASP13
|
3.0
|
38.5
|
1.0
|
CG
|
B:ASP13
|
3.1
|
33.0
|
1.0
|
CD
|
B:GLU15
|
3.6
|
43.5
|
1.0
|
C
|
B:LEU14
|
3.7
|
34.2
|
1.0
|
OE1
|
B:GLU15
|
4.0
|
40.7
|
1.0
|
CA
|
B:CA202
|
4.0
|
52.9
|
1.0
|
O
|
B:HOH380
|
4.2
|
34.8
|
1.0
|
ND1
|
B:HIS159
|
4.2
|
81.7
|
1.0
|
N
|
B:LEU14
|
4.2
|
27.4
|
1.0
|
CE1
|
B:HIS159
|
4.4
|
78.6
|
1.0
|
O
|
B:HOH336
|
4.4
|
55.1
|
1.0
|
OD2
|
B:ASP164
|
4.6
|
73.6
|
1.0
|
N
|
B:GLU15
|
4.6
|
29.0
|
1.0
|
CB
|
B:ASP13
|
4.6
|
34.1
|
1.0
|
CA
|
B:LEU14
|
4.6
|
28.8
|
1.0
|
CG
|
B:GLU15
|
4.7
|
41.7
|
1.0
|
CA
|
B:GLU15
|
4.7
|
27.4
|
1.0
|
O
|
B:HOH329
|
4.7
|
29.8
|
1.0
|
OD1
|
B:ASP113
|
4.9
|
42.5
|
1.0
|
CG
|
B:ASP164
|
4.9
|
66.4
|
1.0
|
|
Calcium binding site 5 out
of 14 in 5cy4
Go back to
Calcium Binding Sites List in 5cy4
Calcium binding site 5 out
of 14 in the Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca202
b:52.9
occ:1.00
|
O
|
B:HOH321
|
2.5
|
28.4
|
1.0
|
O
|
B:HOH336
|
2.5
|
55.1
|
1.0
|
OD2
|
B:ASP113
|
2.5
|
46.8
|
1.0
|
O
|
B:ASN108
|
2.6
|
39.4
|
1.0
|
OD1
|
B:ASP13
|
2.6
|
34.7
|
1.0
|
O
|
B:HOH318
|
2.7
|
40.8
|
1.0
|
O
|
B:HOH380
|
2.8
|
34.8
|
1.0
|
O
|
B:HOH377
|
2.8
|
44.0
|
1.0
|
CG
|
B:ASP113
|
3.4
|
36.9
|
1.0
|
OD1
|
B:ASP113
|
3.6
|
42.5
|
1.0
|
C
|
B:ASN108
|
3.8
|
36.2
|
1.0
|
CG
|
B:ASP13
|
3.8
|
33.0
|
1.0
|
O
|
B:SER109
|
4.0
|
34.0
|
1.0
|
CA
|
B:CA201
|
4.0
|
66.5
|
1.0
|
O
|
B:HOH360
|
4.1
|
49.7
|
1.0
|
CB
|
B:ASP13
|
4.3
|
34.1
|
1.0
|
CA
|
B:ASP13
|
4.3
|
30.8
|
1.0
|
C
|
B:SER109
|
4.4
|
34.7
|
1.0
|
O
|
B:ILE12
|
4.4
|
32.6
|
1.0
|
N
|
B:ASN108
|
4.4
|
27.5
|
1.0
|
O
|
B:HOH314
|
4.5
|
55.6
|
1.0
|
CA
|
B:ASN108
|
4.6
|
32.3
|
1.0
|
CD1
|
B:ILE110
|
4.7
|
43.0
|
1.0
|
CB
|
B:SER109
|
4.7
|
44.7
|
1.0
|
N
|
B:SER109
|
4.7
|
36.2
|
1.0
|
N
|
B:LEU14
|
4.7
|
27.4
|
1.0
|
OD2
|
B:ASP13
|
4.8
|
38.5
|
1.0
|
CB
|
B:ASP113
|
4.8
|
28.5
|
1.0
|
CA
|
B:SER109
|
4.9
|
37.6
|
1.0
|
CB
|
B:ASN108
|
4.9
|
36.3
|
1.0
|
|
Calcium binding site 6 out
of 14 in 5cy4
Go back to
Calcium Binding Sites List in 5cy4
Calcium binding site 6 out
of 14 in the Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca201
b:37.1
occ:1.00
|
OD2
|
C:ASP113
|
2.4
|
36.6
|
1.0
|
O
|
C:HOH308
|
2.4
|
30.9
|
1.0
|
O
|
C:HOH371
|
2.4
|
42.3
|
1.0
|
O
|
C:ASN108
|
2.5
|
24.2
|
1.0
|
OD1
|
C:ASP13
|
2.5
|
30.2
|
1.0
|
O
|
C:HOH320
|
2.6
|
24.2
|
1.0
|
O
|
C:HOH321
|
3.0
|
37.5
|
1.0
|
CG
|
C:ASP113
|
3.4
|
33.6
|
1.0
|
C
|
C:ASN108
|
3.6
|
25.8
|
1.0
|
OD1
|
C:ASP113
|
3.7
|
39.7
|
1.0
|
CG
|
C:ASP13
|
3.7
|
27.5
|
1.0
|
O
|
C:SER109
|
4.0
|
31.9
|
1.0
|
O
|
C:HOH313
|
4.1
|
40.0
|
1.0
|
O
|
C:HOH302
|
4.1
|
32.8
|
1.0
|
CA
|
C:CA202
|
4.1
|
39.4
|
1.0
|
OD1
|
C:ASP164
|
4.2
|
38.5
|
1.0
|
N
|
C:ASN108
|
4.3
|
24.9
|
1.0
|
C
|
C:SER109
|
4.3
|
28.4
|
1.0
|
CB
|
C:ASP13
|
4.3
|
25.5
|
1.0
|
CA
|
C:ASN108
|
4.4
|
28.1
|
1.0
|
CA
|
C:ASP13
|
4.5
|
23.9
|
1.0
|
N
|
C:SER109
|
4.5
|
29.5
|
1.0
|
CB
|
C:SER109
|
4.6
|
44.5
|
1.0
|
O
|
C:ILE12
|
4.6
|
21.8
|
1.0
|
OD2
|
C:ASP13
|
4.6
|
32.1
|
1.0
|
CB
|
C:ASP113
|
4.7
|
24.9
|
1.0
|
CA
|
C:SER109
|
4.7
|
35.6
|
1.0
|
CB
|
C:ASN108
|
4.7
|
29.9
|
1.0
|
N
|
C:LEU14
|
4.9
|
24.5
|
1.0
|
CD1
|
C:ILE110
|
4.9
|
26.9
|
1.0
|
N
|
C:ILE110
|
4.9
|
26.4
|
1.0
|
CG
|
C:ASP164
|
5.0
|
39.8
|
1.0
|
|
Calcium binding site 7 out
of 14 in 5cy4
Go back to
Calcium Binding Sites List in 5cy4
Calcium binding site 7 out
of 14 in the Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca202
b:39.4
occ:1.00
|
O
|
C:HOH313
|
2.4
|
40.0
|
1.0
|
O
|
C:LEU14
|
2.4
|
31.9
|
1.0
|
OE2
|
C:GLU15
|
2.4
|
37.5
|
1.0
|
OD2
|
C:ASP13
|
2.7
|
32.1
|
1.0
|
O
|
C:HOH321
|
2.7
|
37.5
|
1.0
|
OD1
|
C:ASP13
|
2.7
|
30.2
|
1.0
|
CG
|
C:ASP13
|
3.0
|
27.5
|
1.0
|
C
|
C:LEU14
|
3.5
|
27.2
|
1.0
|
CD
|
C:GLU15
|
3.5
|
38.3
|
1.0
|
N
|
C:LEU14
|
4.1
|
24.5
|
1.0
|
CA
|
C:CA201
|
4.1
|
37.1
|
1.0
|
OE1
|
C:GLU15
|
4.3
|
40.5
|
1.0
|
N
|
C:GLU15
|
4.4
|
27.1
|
1.0
|
O
|
C:HOH371
|
4.4
|
42.3
|
1.0
|
CG
|
C:GLU15
|
4.4
|
35.3
|
1.0
|
OD2
|
C:ASP164
|
4.4
|
47.7
|
1.0
|
O
|
C:HOH308
|
4.4
|
30.9
|
1.0
|
CA
|
C:LEU14
|
4.5
|
25.9
|
1.0
|
CA
|
C:GLU15
|
4.5
|
34.1
|
1.0
|
CB
|
C:ASP13
|
4.5
|
25.5
|
1.0
|
CG
|
C:ASP164
|
4.5
|
39.8
|
1.0
|
O
|
C:HOH357
|
4.5
|
43.5
|
1.0
|
OD1
|
C:ASP113
|
4.7
|
39.7
|
1.0
|
OD1
|
C:ASP164
|
4.8
|
38.5
|
1.0
|
C
|
C:ASP13
|
4.9
|
24.7
|
1.0
|
CB
|
C:ASP164
|
5.0
|
35.1
|
1.0
|
|
Calcium binding site 8 out
of 14 in 5cy4
Go back to
Calcium Binding Sites List in 5cy4
Calcium binding site 8 out
of 14 in the Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca201
b:29.6
occ:1.00
|
O
|
D:LEU14
|
2.3
|
27.3
|
1.0
|
OE2
|
D:GLU15
|
2.4
|
36.2
|
1.0
|
O
|
A:HOH314
|
2.4
|
26.1
|
1.0
|
OD2
|
D:ASP13
|
2.6
|
28.5
|
1.0
|
OD1
|
D:ASP13
|
2.6
|
29.5
|
1.0
|
O
|
A:HOH309
|
2.7
|
25.6
|
1.0
|
O
|
D:HOH329
|
2.8
|
29.9
|
1.0
|
CG
|
D:ASP13
|
2.9
|
28.7
|
1.0
|
CD
|
D:GLU15
|
3.4
|
37.9
|
1.0
|
C
|
D:LEU14
|
3.5
|
26.9
|
1.0
|
N
|
D:LEU14
|
4.0
|
27.5
|
1.0
|
OE1
|
D:GLU15
|
4.1
|
39.2
|
1.0
|
CA
|
D:CA202
|
4.1
|
26.3
|
1.0
|
NH2
|
A:ARG65
|
4.2
|
30.0
|
1.0
|
CG
|
D:GLU15
|
4.3
|
34.1
|
1.0
|
O
|
D:HOH322
|
4.3
|
21.2
|
1.0
|
CA
|
D:LEU14
|
4.4
|
29.1
|
1.0
|
N
|
D:GLU15
|
4.4
|
27.0
|
1.0
|
OE2
|
A:GLU61
|
4.4
|
40.0
|
1.0
|
O
|
D:HOH361
|
4.4
|
32.1
|
1.0
|
CB
|
D:ASP13
|
4.4
|
26.5
|
1.0
|
CA
|
D:GLU15
|
4.5
|
27.1
|
1.0
|
OD2
|
D:ASP164
|
4.6
|
29.4
|
1.0
|
OD1
|
D:ASP113
|
4.6
|
33.3
|
1.0
|
OE1
|
A:GLU61
|
4.6
|
42.0
|
1.0
|
CG
|
D:ASP164
|
4.6
|
32.0
|
1.0
|
OD1
|
D:ASP164
|
4.8
|
27.7
|
1.0
|
C
|
D:ASP13
|
4.8
|
29.2
|
1.0
|
CD
|
A:GLU61
|
4.9
|
39.2
|
1.0
|
|
Calcium binding site 9 out
of 14 in 5cy4
Go back to
Calcium Binding Sites List in 5cy4
Calcium binding site 9 out
of 14 in the Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca202
b:26.3
occ:1.00
|
OD2
|
D:ASP113
|
2.4
|
26.7
|
1.0
|
OD1
|
D:ASP13
|
2.4
|
29.5
|
1.0
|
O
|
D:HOH322
|
2.4
|
21.2
|
1.0
|
O
|
D:ASN108
|
2.5
|
23.8
|
1.0
|
O
|
D:HOH317
|
2.5
|
26.8
|
1.0
|
O
|
D:HOH361
|
2.6
|
32.1
|
1.0
|
O
|
D:HOH329
|
3.1
|
29.9
|
1.0
|
CG
|
D:ASP113
|
3.4
|
31.1
|
1.0
|
CG
|
D:ASP13
|
3.5
|
28.7
|
1.0
|
C
|
D:ASN108
|
3.6
|
20.4
|
1.0
|
OD1
|
D:ASP113
|
3.8
|
33.3
|
1.0
|
O
|
D:SER109
|
4.1
|
28.3
|
1.0
|
OD1
|
D:ASP164
|
4.1
|
27.7
|
1.0
|
CA
|
D:CA201
|
4.1
|
29.6
|
1.0
|
CB
|
D:ASP13
|
4.2
|
26.5
|
1.0
|
N
|
D:ASN108
|
4.2
|
23.0
|
1.0
|
O
|
A:HOH314
|
4.3
|
26.1
|
1.0
|
CA
|
D:ASN108
|
4.4
|
23.7
|
1.0
|
C
|
D:SER109
|
4.4
|
26.9
|
1.0
|
CA
|
D:ASP13
|
4.4
|
29.9
|
1.0
|
O
|
A:HOH386
|
4.4
|
28.9
|
1.0
|
O
|
D:HOH309
|
4.4
|
30.4
|
1.0
|
CD1
|
D:ILE110
|
4.5
|
38.5
|
1.0
|
OD2
|
D:ASP13
|
4.5
|
28.5
|
1.0
|
O
|
D:ILE12
|
4.6
|
24.6
|
1.0
|
N
|
D:SER109
|
4.6
|
26.5
|
1.0
|
CB
|
D:ASN108
|
4.7
|
18.5
|
1.0
|
CB
|
D:ASP113
|
4.7
|
23.1
|
1.0
|
CB
|
D:SER109
|
4.8
|
30.2
|
1.0
|
CA
|
D:SER109
|
4.8
|
26.4
|
1.0
|
N
|
D:LEU14
|
4.9
|
27.5
|
1.0
|
N
|
D:ILE110
|
4.9
|
26.5
|
1.0
|
CA
|
D:ILE110
|
4.9
|
28.1
|
1.0
|
CG
|
D:ASP164
|
4.9
|
32.0
|
1.0
|
|
Calcium binding site 10 out
of 14 in 5cy4
Go back to
Calcium Binding Sites List in 5cy4
Calcium binding site 10 out
of 14 in the Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca203
b:41.7
occ:1.00
|
O
|
D:HOH383
|
3.1
|
35.7
|
1.0
|
NZ
|
D:LYS173
|
3.2
|
32.5
|
1.0
|
N
|
D:VAL40
|
3.2
|
30.8
|
1.0
|
CA
|
D:ASN39
|
3.7
|
31.5
|
1.0
|
O
|
D:LEU38
|
3.8
|
34.5
|
1.0
|
C
|
D:ASN39
|
4.0
|
31.6
|
1.0
|
CG2
|
D:VAL40
|
4.0
|
25.2
|
1.0
|
CB
|
D:VAL40
|
4.1
|
30.1
|
1.0
|
O
|
D:HOH328
|
4.1
|
45.7
|
1.0
|
O
|
D:HOH306
|
4.2
|
33.7
|
1.0
|
CA
|
D:VAL40
|
4.2
|
28.1
|
1.0
|
OD1
|
D:ASN39
|
4.3
|
38.4
|
1.0
|
CE
|
D:LYS173
|
4.4
|
34.1
|
1.0
|
CB
|
D:ASN39
|
4.5
|
29.8
|
1.0
|
C
|
D:LEU38
|
4.7
|
34.2
|
1.0
|
N
|
D:ASN39
|
4.7
|
34.1
|
1.0
|
O
|
D:VAL40
|
4.8
|
36.6
|
1.0
|
CG
|
D:ASN39
|
4.9
|
36.9
|
1.0
|
|
Reference:
C.M.Lukacs,
J.W.Fairman,
D.D.Lorimer,
T.E.Edwards.
Crystal Structure of An Oligoribonuclease From Acinetobacter Baumannii To Be Published.
Page generated: Sun Jul 14 17:38:08 2024
|