Calcium in PDB 5czc: The Structure of Vink

The structure of The Structure of Vink, PDB code: 5czc was solved by A.Miyanaga, S.Iwasawa, Y.Shinohara, F.Kudo, T.Eguchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.43 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.520, 74.810, 84.810, 90.00, 91.24, 90.00
R / Rfree (%)	16.5 / 21.6

The binding sites of Calcium atom in the The Structure of Vink (pdb code 5czc). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the The Structure of Vink, PDB code: 5czc:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the The Structure of Vink


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of Vink within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:22.4 occ:1.00 OE2 A:GLU171 2.2 19.7 1.0 O A:HOH617 2.3 27.3 1.0 O A:ARG169 2.4 17.8 1.0 CD A:GLU171 3.4 19.9 1.0 C A:ARG169 3.6 17.8 1.0 CG A:GLU171 4.1 17.5 1.0 C A:GLY170 4.3 16.6 1.0 NH2 A:ARG191 4.3 45.2 1.0 CB A:ARG169 4.4 21.9 1.0 OE1 A:GLU171 4.4 19.9 1.0 O A:GLY170 4.4 16.1 1.0 CA A:ARG169 4.5 17.7 1.0 N A:GLY170 4.6 16.9 1.0 CA A:GLY170 4.6 17.5 1.0 N A:GLU171 4.7 14.9 1.0 O A:HOH619 4.9 21.7 1.0

Calcium binding site 2 out of 2 in the The Structure of Vink


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Structure of Vink within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca402 b:33.1 occ:1.00 O B:HOH672 2.3 38.7 1.0 O B:HOH691 2.3 32.2 1.0 OE2 B:GLU190 2.5 23.4 1.0 OE1 B:GLU190 2.7 23.0 1.0 CD B:GLU190 2.9 20.1 1.0 O B:HOH685 4.1 36.3 1.0 CG B:GLU190 4.4 16.8 1.0 O B:HOH571 4.4 22.6 1.0 CA B:GLY145 5.0 15.1 1.0 NH2 B:ARG212 5.0 27.2 1.0

A.Miyanaga, S.Iwasawa, Y.Shinohara, F.Kudo, T.Eguchi. Structure-Based Analysis of the Molecular Interactions Between Acyltransferase and Acyl Carrier Protein in Vicenistatin Biosynthesis. Proc.Natl.Acad.Sci.Usa V. 113 1802 2016.
ISSN: ESSN 1091-6490
PubMed: 26831085
DOI: 10.1073/PNAS.1520042113