Calcium in PDB 5day: The Structure of NAP1-Related Protein(NRP1) in Arabidopsis

The structure of The Structure of NAP1-Related Protein(NRP1) in Arabidopsis, PDB code: 5day was solved by Y.Zhu, L.Rong, Y.Yang, C.Zhang, H.Y.Feng, L.N.Zheng, W.H.Shen, J.B.Ma, A.W.Dong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.22 / 2.33
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.542, 60.812, 135.248, 90.00, 90.00, 90.00
R / Rfree (%)	23 / 26.9

The binding sites of Calcium atom in the The Structure of NAP1-Related Protein(NRP1) in Arabidopsis (pdb code 5day). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the The Structure of NAP1-Related Protein(NRP1) in Arabidopsis, PDB code: 5day:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the The Structure of NAP1-Related Protein(NRP1) in Arabidopsis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of NAP1-Related Protein(NRP1) in Arabidopsis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:0.3 occ:1.00 O A:HOH443 2.5 62.7 1.0 OD1 A:ASP40 3.2 53.1 1.0 OD2 A:ASP40 3.3 56.3 1.0 CG A:ASP40 3.7 51.3 1.0

Calcium binding site 2 out of 3 in the The Structure of NAP1-Related Protein(NRP1) in Arabidopsis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Structure of NAP1-Related Protein(NRP1) in Arabidopsis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:81.9 occ:1.00 O A:HOH442 2.1 63.1 1.0 O A:HOH449 2.3 70.8 1.0 OE1 A:GLU51 2.5 53.2 1.0 O A:HOH429 2.9 58.8 1.0 CD A:GLU51 3.3 53.4 1.0 OE2 A:GLU51 3.8 53.0 1.0 O A:HOH425 4.3 44.0 1.0 CG A:GLU51 4.4 47.9 1.0 OE1 A:GLU54 4.5 55.7 1.0

Calcium binding site 3 out of 3 in the The Structure of NAP1-Related Protein(NRP1) in Arabidopsis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Structure of NAP1-Related Protein(NRP1) in Arabidopsis within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca301 b:74.8 occ:1.00 O B:HOH427 2.2 65.4 1.0 O B:HOH444 2.2 65.3 1.0 O B:HOH441 2.3 69.1 1.0 O B:GLN22 2.4 51.4 1.0 C B:GLN22 3.5 50.3 1.0 CA B:GLN22 4.2 53.7 1.0 N B:ILE23 4.4 38.4 1.0 CA B:ILE23 4.6 36.1 1.0 CB B:GLN22 4.6 54.4 1.0 N B:ASP24 4.6 41.8 1.0 C B:ILE23 4.8 34.1 1.0

Y.Zhu, L.Rong, Y.Yang, C.Zhang, H.Y.Feng, L.N.Zheng, W.H.Shen, J.B.Ma, A.W.Dong. The Structure of NAP1-Related Protein(NRP1) in Arabidopsis To Be Published.