Atomistry » Calcium » PDB 5dau-5dy1 » 5ddl
Atomistry »
  Calcium »
    PDB 5dau-5dy1 »
      5ddl »

Calcium in PDB 5ddl: Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione

Enzymatic activity of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione

All present enzymatic activity of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione:
2.5.1.18;

Protein crystallography data

The structure of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione, PDB code: 5ddl was solved by L.J.Parker, M.W.Parker, C.J.Morton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.50 / 1.98
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.665, 89.795, 68.854, 90.00, 98.08, 90.00
R / Rfree (%) 13.8 / 17.8

Other elements in 5ddl:

The structure of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione also contains other interesting chemical elements:

Arsenic (As) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione (pdb code 5ddl). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione, PDB code: 5ddl:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 5ddl

Go back to Calcium Binding Sites List in 5ddl
Calcium binding site 1 out of 2 in the Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca305

b:30.2
occ:1.00
 O B:HOH485 2.3 16.3 1.0
O B:HOH554 2.3 27.4 1.0
O B:GLY77 2.4 10.4 1.0
O B:HOH524 2.5 19.3 1.0
OE1 B:GLN147 2.5 28.2 1.0
O B:HOH536 2.7 17.7 1.0
HD23 B:LEU78 3.5 10.6 1.0
C B:GLY77 3.6 12.7 1.0
HB3 B:GLN147 3.6 16.0 1.0
CD B:GLN147 3.7 38.1 1.0
HA B:LEU78 3.9 8.3 1.0
HA3 B:GLY77 4.0 15.5 1.0
CB B:GLN147 4.3 13.4 1.0
HB2 B:GLN147 4.3 16.0 1.0
CA B:GLY77 4.4 12.9 1.0
CD2 B:LEU78 4.4 8.8 1.0
O B:HOH553 4.5 29.1 1.0
N B:LEU78 4.5 7.3 1.0
HD22 B:LEU78 4.6 10.6 1.0
O B:HOH503 4.6 23.7 1.0
HE22 B:GLN147 4.6 41.8 1.0
CG B:GLN147 4.6 22.4 1.0
O B:HOH495 4.6 11.0 1.0
O B:HOH550 4.7 27.0 1.0
CA B:LEU78 4.7 7.0 1.0
NE2 B:GLN147 4.7 34.8 1.0
HD21 B:LEU78 4.7 10.6 1.0
O B:ILE148 4.7 9.1 1.0
O B:HOH451 4.8 10.1 1.0
O B:LEU76 4.8 13.6 1.0
HA2 B:GLY77 4.9 15.5 1.0
HG2 B:GLN147 5.0 26.8 1.0

Calcium binding site 2 out of 2 in 5ddl

Go back to Calcium Binding Sites List in 5ddl
Calcium binding site 2 out of 2 in the Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca306

b:39.2
occ:1.00
 O B:HOH539 2.3 31.0 1.0
O B:HOH407 2.5 36.8 1.0
O B:GLU30 2.5 16.7 1.0
HA B:GLU31 3.5 24.1 1.0
C B:GLU30 3.8 26.0 1.0
H B:VAL32 4.1 22.4 1.0
OE1 B:GLU31 4.2 32.2 1.0
CA B:GLU31 4.3 20.0 1.0
HB2 B:GLU30 4.4 20.1 1.0
N B:GLU31 4.5 17.3 1.0
HG23 B:VAL32 4.5 38.1 1.0
CD B:GLU31 4.5 40.6 1.0
H B:GLU30 4.6 17.6 1.0
CA B:GLU30 4.8 13.7 1.0
N B:VAL32 4.8 18.7 1.0
N B:GLU30 4.9 14.7 1.0
OE2 B:GLU31 4.9 47.5 1.0
HG2 B:GLU31 4.9 41.0 1.0

Reference:

L.J.Parker, M.W.Parker, C.J.Morton, A.Bocedi, D.B.Ascher, J.B.Aitken, H.H.Harris, M.Lo Bello, G.Ricci. Visualisation of Organoarsenic Human Glutathione Transferase P1-1 Complexes: Metabolism of Arsenic-Based Therapeutics To Be Published.
Page generated: Sun Jul 14 17:59:32 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy