Atomistry » Calcium » PDB 5day-5dzv » 5ddl
Atomistry »
  Calcium »
    PDB 5day-5dzv »
      5ddl »

Calcium in PDB 5ddl: Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione

Enzymatic activity of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione

All present enzymatic activity of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione:
2.5.1.18;

Protein crystallography data

The structure of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione, PDB code: 5ddl was solved by L.J.Parker, M.W.Parker, C.J.Morton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.50 / 1.98
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.665, 89.795, 68.854, 90.00, 98.08, 90.00
R / Rfree (%) 13.8 / 17.8

Other elements in 5ddl:

The structure of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione also contains other interesting chemical elements:

Arsenic (As) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione (pdb code 5ddl). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione, PDB code: 5ddl:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 5ddl

Go back to Calcium Binding Sites List in 5ddl
Calcium binding site 1 out of 2 in the Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca305

b:30.2
occ:1.00
 O B:HOH485 2.3 16.3 1.0
O B:HOH554 2.3 27.4 1.0
O B:GLY77 2.4 10.4 1.0
O B:HOH524 2.5 19.3 1.0
OE1 B:GLN147 2.5 28.2 1.0
O B:HOH536 2.7 17.7 1.0
HD23 B:LEU78 3.5 10.6 1.0
C B:GLY77 3.6 12.7 1.0
HB3 B:GLN147 3.6 16.0 1.0
CD B:GLN147 3.7 38.1 1.0
HA B:LEU78 3.9 8.3 1.0
HA3 B:GLY77 4.0 15.5 1.0
CB B:GLN147 4.3 13.4 1.0
HB2 B:GLN147 4.3 16.0 1.0
CA B:GLY77 4.4 12.9 1.0
CD2 B:LEU78 4.4 8.8 1.0
O B:HOH553 4.5 29.1 1.0
N B:LEU78 4.5 7.3 1.0
HD22 B:LEU78 4.6 10.6 1.0
O B:HOH503 4.6 23.7 1.0
HE22 B:GLN147 4.6 41.8 1.0
CG B:GLN147 4.6 22.4 1.0
O B:HOH495 4.6 11.0 1.0
O B:HOH550 4.7 27.0 1.0
CA B:LEU78 4.7 7.0 1.0
NE2 B:GLN147 4.7 34.8 1.0
HD21 B:LEU78 4.7 10.6 1.0
O B:ILE148 4.7 9.1 1.0
O B:HOH451 4.8 10.1 1.0
O B:LEU76 4.8 13.6 1.0
HA2 B:GLY77 4.9 15.5 1.0
HG2 B:GLN147 5.0 26.8 1.0

Calcium binding site 2 out of 2 in 5ddl

Go back to Calcium Binding Sites List in 5ddl
Calcium binding site 2 out of 2 in the Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Wt Human Glutathione Transferase Pi Soaked with A Metalloid Then Back-Soaked with Glutathione within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca306

b:39.2
occ:1.00
 O B:HOH539 2.3 31.0 1.0
O B:HOH407 2.5 36.8 1.0
O B:GLU30 2.5 16.7 1.0
HA B:GLU31 3.5 24.1 1.0
C B:GLU30 3.8 26.0 1.0
H B:VAL32 4.1 22.4 1.0
OE1 B:GLU31 4.2 32.2 1.0
CA B:GLU31 4.3 20.0 1.0
HB2 B:GLU30 4.4 20.1 1.0
N B:GLU31 4.5 17.3 1.0
HG23 B:VAL32 4.5 38.1 1.0
CD B:GLU31 4.5 40.6 1.0
H B:GLU30 4.6 17.6 1.0
CA B:GLU30 4.8 13.7 1.0
N B:VAL32 4.8 18.7 1.0
N B:GLU30 4.9 14.7 1.0
OE2 B:GLU31 4.9 47.5 1.0
HG2 B:GLU31 4.9 41.0 1.0

Reference:

L.J.Parker, M.W.Parker, C.J.Morton, A.Bocedi, D.B.Ascher, J.B.Aitken, H.H.Harris, M.Lo Bello, G.Ricci. Visualisation of Organoarsenic Human Glutathione Transferase P1-1 Complexes: Metabolism of Arsenic-Based Therapeutics To Be Published.
Page generated: Wed Jul 9 05:07:30 2025

Last articles

Cl in 5H9M
Cl in 5HA4
Cl in 5HA6
Cl in 5H8G
Cl in 5H9C
Cl in 5H71
Cl in 5H6G
Cl in 5H6I
Cl in 5H8E
Cl in 5H2U
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy