Calcium in PDB 5djl: Structure of Wt Human Glutathione Transferase in Complex with Cisplatin in the Presence of Glutathione.

All present enzymatic activity of Structure of Wt Human Glutathione Transferase in Complex with Cisplatin in the Presence of Glutathione.:
2.5.1.18;

The structure of Structure of Wt Human Glutathione Transferase in Complex with Cisplatin in the Presence of Glutathione., PDB code: 5djl was solved by L.J.Parker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.18 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	77.450, 89.940, 68.780, 90.00, 98.03, 90.00
R / Rfree (%)	14.9 / 17.8

The structure of Structure of Wt Human Glutathione Transferase in Complex with Cisplatin in the Presence of Glutathione. also contains other interesting chemical elements:

Platinum

(Pt)

3 atoms

The binding sites of Calcium atom in the Structure of Wt Human Glutathione Transferase in Complex with Cisplatin in the Presence of Glutathione. (pdb code 5djl). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Wt Human Glutathione Transferase in Complex with Cisplatin in the Presence of Glutathione., PDB code: 5djl:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Wt Human Glutathione Transferase in Complex with Cisplatin in the Presence of Glutathione.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Wt Human Glutathione Transferase in Complex with Cisplatin in the Presence of Glutathione. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca301 b:13.8 occ:0.64 O B:HOH595 2.4 25.4 1.0 O B:HOH525 2.4 18.0 1.0 O B:GLY77 2.4 16.2 1.0 OE1 B:GLN147 2.4 27.0 1.0 O B:HOH533 2.5 24.2 1.0 O B:HOH543 2.5 27.3 1.0 O B:HOH538 2.5 19.5 1.0 HD23 B:LEU78 3.5 19.2 1.0 C B:GLY77 3.6 16.4 1.0 HB3 B:GLN147 3.6 17.7 1.0 CD B:GLN147 3.7 30.6 1.0 HA3 B:GLY77 4.0 21.3 1.0 HA B:LEU78 4.0 11.3 1.0 HB2 B:GLN147 4.3 17.7 1.0 CB B:GLN147 4.3 14.8 1.0 O B:HOH482 4.4 21.8 1.0 CA B:GLY77 4.4 17.8 1.0 O B:HOH627 4.4 40.9 1.0 CD2 B:LEU78 4.5 16.0 1.0 HE22 B:GLN147 4.5 35.1 1.0 NE2 B:GLN147 4.6 29.3 1.0 CG B:GLN147 4.6 23.3 1.0 N B:LEU78 4.6 15.4 1.0 O B:HOH601 4.6 26.7 1.0 O B:HOH528 4.6 14.2 1.0 O B:HOH500 4.7 24.9 1.0 O B:HOH462 4.7 16.4 1.0 CA B:LEU78 4.7 9.4 1.0 O B:ILE148 4.7 13.9 1.0 HD22 B:LEU78 4.7 19.2 1.0 O B:LEU76 4.8 18.2 1.0 HD21 B:LEU78 4.8 19.2 1.0 HA2 B:GLY77 4.9 21.3 1.0 HG2 B:GLN147 5.0 27.9 1.0

Calcium binding site 2 out of 2 in the Structure of Wt Human Glutathione Transferase in Complex with Cisplatin in the Presence of Glutathione.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Wt Human Glutathione Transferase in Complex with Cisplatin in the Presence of Glutathione. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca302 b:23.9 occ:0.59 HZ1 B:LYS29 2.1 46.6 1.0 HZ2 B:LYS29 2.2 46.6 1.0 O B:HOH584 2.4 31.7 1.0 O B:GLU30 2.4 20.7 1.0 HE3 B:LYS29 2.4 42.9 1.0 NZ B:LYS29 2.4 38.9 1.0 O B:HOH494 2.5 37.4 1.0 O B:HOH558 2.5 36.1 1.0 CE B:LYS29 2.9 35.8 1.0 HZ3 B:LYS29 3.3 46.6 1.0 HA B:GLU31 3.5 24.0 1.0 HE2 B:LYS29 3.5 42.9 1.0 C B:GLU30 3.6 23.4 1.0 HD2 B:LYS29 3.9 51.7 1.0 H B:VAL32 4.0 22.4 1.0 CD B:LYS29 4.0 43.1 1.0 HG23 B:VAL32 4.3 37.5 1.0 CA B:GLU31 4.3 20.0 1.0 H B:GLU30 4.3 20.8 1.0 HB2 B:GLU30 4.4 21.5 1.0 N B:GLU31 4.4 18.5 1.0 OE1 B:GLU31 4.5 31.4 1.0 HG3 B:LYS29 4.5 44.1 1.0 CA B:GLU30 4.6 18.2 1.0 HD3 B:LYS29 4.7 51.7 1.0 CD B:GLU31 4.7 37.0 1.0 N B:GLU30 4.7 17.3 1.0 N B:VAL32 4.7 18.6 1.0 HG2 B:GLU31 4.8 46.5 1.0 CG B:LYS29 4.9 36.8 1.0 CB B:GLU30 4.9 17.9 1.0

L.J.Parker, L.C.Italiano, N.C.Hancock, J.Aitken, H.H.Harris, G.Hansen, D.B.Ascher, C.J.Morton, M.W.Parker, M.Lo Bello. A Structure-Based Mechanism of Cisplatin Resistance Mediated By Glutathione Transferase P1-1 Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490