Calcium in PDB 5dow: Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
Protein crystallography data
The structure of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration, PDB code: 5dow
was solved by
J.P.Keller,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
22.81 /
1.70
|
|
Space group
|
P 32 1 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
98.874,
98.874,
128.583,
90.00,
90.00,
120.00
|
|
R / Rfree (%)
|
9.7 /
14.1
|
Other elements in 5dow:
The structure of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
(pdb code 5dow). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration, PDB code: 5dow:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 5dow
Go back to
Calcium Binding Sites List in 5dow
Calcium binding site 1 out
of 16 in the Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:14.4
occ:1.00
|
O
|
A:TYR100
|
2.3
|
15.2
|
1.0
|
|
OD1
|
A:ASP94
|
2.3
|
13.9
|
1.0
|
|
OD1
|
A:ASP96
|
2.4
|
14.1
|
1.0
|
|
OE1
|
A:GLU105
|
2.4
|
11.6
|
1.0
|
|
O
|
A:HOH452
|
2.4
|
14.3
|
1.0
|
|
OD1
|
A:ASN98
|
2.5
|
14.2
|
1.0
|
|
OE2
|
A:GLU105
|
2.5
|
11.6
|
1.0
|
|
CD
|
A:GLU105
|
2.8
|
11.5
|
1.0
|
|
CG
|
A:ASP96
|
3.3
|
15.4
|
1.0
|
|
CG
|
A:ASN98
|
3.4
|
14.3
|
1.0
|
|
CG
|
A:ASP94
|
3.5
|
13.9
|
1.0
|
|
C
|
A:TYR100
|
3.5
|
14.6
|
1.0
|
|
OD2
|
A:ASP96
|
3.8
|
18.9
|
1.0
|
|
ND2
|
A:ASN98
|
4.0
|
15.3
|
1.0
|
|
N
|
A:ASN98
|
4.2
|
14.7
|
1.0
|
|
N
|
A:TYR100
|
4.2
|
14.7
|
1.0
|
|
CA
|
A:ASP94
|
4.2
|
12.4
|
1.0
|
|
N
|
A:ASP96
|
4.2
|
12.6
|
1.0
|
|
CG
|
A:GLU105
|
4.3
|
11.9
|
1.0
|
|
OD2
|
A:ASP94
|
4.3
|
16.8
|
1.0
|
|
CB
|
A:ASN98
|
4.3
|
15.7
|
1.0
|
|
CB
|
A:ASP94
|
4.4
|
13.2
|
1.0
|
|
C
|
A:ASP94
|
4.4
|
11.6
|
1.0
|
|
CA
|
A:TYR100
|
4.4
|
15.1
|
1.0
|
|
N
|
A:LYS95
|
4.4
|
11.8
|
1.0
|
|
N
|
A:ILE101
|
4.5
|
12.8
|
1.0
|
|
O
|
A:HOH388
|
4.5
|
24.3
|
1.0
|
|
CA
|
A:ILE101
|
4.5
|
11.5
|
1.0
|
|
CB
|
A:ASP96
|
4.6
|
13.0
|
1.0
|
|
N
|
A:GLY97
|
4.6
|
12.7
|
1.0
|
|
O
|
A:HOH362
|
4.6
|
20.6
|
1.0
|
|
CA
|
A:ASN98
|
4.7
|
14.4
|
1.0
|
|
CA
|
A:ASP96
|
4.7
|
12.9
|
1.0
|
|
N
|
A:SER102
|
4.7
|
11.3
|
1.0
|
|
CB
|
A:TYR100
|
4.8
|
15.2
|
1.0
|
|
N
|
A:GLY99
|
4.8
|
14.8
|
1.0
|
|
O
|
A:HOH355
|
4.9
|
15.3
|
1.0
|
|
C
|
A:ASP96
|
4.9
|
13.1
|
1.0
|
|
C
|
A:ASN98
|
5.0
|
14.2
|
1.0
|
|
O
|
A:ASP94
|
5.0
|
11.5
|
1.0
|
|
Calcium binding site 2 out
of 16 in 5dow
Go back to
Calcium Binding Sites List in 5dow
Calcium binding site 2 out
of 16 in the Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca203
b:14.4
occ:1.00
|
OD1
|
A:ASP57
|
2.3
|
14.4
|
1.0
|
|
OD1
|
A:ASP59
|
2.3
|
12.2
|
1.0
|
|
OD1
|
A:ASN61
|
2.3
|
12.9
|
1.0
|
|
OE2
|
A:GLU68
|
2.4
|
12.3
|
1.0
|
|
O
|
A:HOH338
|
2.4
|
16.6
|
1.0
|
|
O
|
A:THR63
|
2.5
|
10.3
|
1.0
|
|
OE1
|
A:GLU68
|
2.5
|
13.1
|
1.0
|
|
CD
|
A:GLU68
|
2.8
|
11.2
|
1.0
|
|
CG
|
A:ASN61
|
3.3
|
12.1
|
1.0
|
|
CG
|
A:ASP59
|
3.3
|
11.8
|
1.0
|
|
CG
|
A:ASP57
|
3.5
|
14.4
|
1.0
|
|
OD2
|
A:ASP59
|
3.7
|
15.2
|
1.0
|
|
C
|
A:THR63
|
3.7
|
10.4
|
1.0
|
|
O
|
A:HOH317
|
3.7
|
24.0
|
1.0
|
|
ND2
|
A:ASN61
|
3.9
|
14.5
|
1.0
|
|
CA
|
A:ASP57
|
4.2
|
12.8
|
1.0
|
|
N
|
A:ASN61
|
4.3
|
13.2
|
1.0
|
|
OD2
|
A:ASP57
|
4.3
|
15.9
|
1.0
|
|
CG
|
A:GLU68
|
4.3
|
11.3
|
1.0
|
|
N
|
A:THR63
|
4.3
|
11.3
|
1.0
|
|
CB
|
A:ASP57
|
4.3
|
14.7
|
1.0
|
|
O
|
A:HOH351
|
4.4
|
19.8
|
1.0
|
|
CB
|
A:ASN61
|
4.5
|
14.7
|
1.0
|
|
N
|
A:ILE64
|
4.6
|
11.6
|
1.0
|
|
CA
|
A:ILE64
|
4.6
|
11.1
|
1.0
|
|
N
|
A:ASP65
|
4.6
|
11.0
|
1.0
|
|
C
|
A:ASP57
|
4.6
|
13.2
|
1.0
|
|
OG1
|
A:THR63
|
4.6
|
12.2
|
1.0
|
|
N
|
A:ASP59
|
4.6
|
12.4
|
1.0
|
|
CA
|
A:THR63
|
4.6
|
11.6
|
1.0
|
|
OD2
|
A:ASP65
|
4.6
|
21.6
|
1.0
|
|
CB
|
A:ASP59
|
4.7
|
12.0
|
1.0
|
|
N
|
A:GLY60
|
4.7
|
12.6
|
1.0
|
|
CA
|
A:ASN61
|
4.7
|
13.6
|
1.0
|
|
N
|
A:ALA58
|
4.8
|
11.6
|
1.0
|
|
CG
|
A:ASP65
|
4.8
|
15.3
|
1.0
|
|
N
|
A:GLY62
|
4.8
|
12.7
|
1.0
|
|
C
|
A:ASN61
|
5.0
|
13.3
|
1.0
|
|
Calcium binding site 3 out
of 16 in 5dow
Go back to
Calcium Binding Sites List in 5dow
Calcium binding site 3 out
of 16 in the Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca204
b:14.2
occ:1.00
|
OD1
|
A:ASP21
|
2.3
|
14.7
|
1.0
|
|
OD1
|
A:ASP23
|
2.3
|
17.3
|
1.0
|
|
OE2
|
A:GLU32
|
2.3
|
14.3
|
1.0
|
|
O
|
A:THR27
|
2.4
|
14.9
|
1.0
|
|
OD1
|
A:ASP25
|
2.4
|
16.1
|
1.0
|
|
O
|
A:HOH390
|
2.4
|
14.9
|
1.0
|
|
OE1
|
A:GLU32
|
2.5
|
13.2
|
1.0
|
|
CD
|
A:GLU32
|
2.8
|
12.6
|
1.0
|
|
CG
|
A:ASP25
|
3.3
|
17.7
|
1.0
|
|
CG
|
A:ASP23
|
3.3
|
18.2
|
1.0
|
|
CG
|
A:ASP21
|
3.4
|
13.9
|
1.0
|
|
C
|
A:THR27
|
3.6
|
12.5
|
1.0
|
|
OD2
|
A:ASP23
|
3.7
|
22.0
|
1.0
|
|
OD2
|
A:ASP25
|
3.9
|
22.5
|
1.0
|
|
OG1
|
A:THR27
|
3.9
|
20.6
|
1.0
|
|
CA
|
A:ASP21
|
4.0
|
13.5
|
1.0
|
|
CB
|
A:ASP21
|
4.1
|
14.5
|
1.0
|
|
N
|
A:THR27
|
4.2
|
13.2
|
1.0
|
|
N
|
A:ASP25
|
4.3
|
16.2
|
1.0
|
|
CG
|
A:GLU32
|
4.3
|
11.8
|
1.0
|
|
OD2
|
A:ASP21
|
4.3
|
14.0
|
1.0
|
|
CB
|
A:ASP25
|
4.4
|
17.4
|
1.0
|
|
CA
|
A:THR27
|
4.4
|
14.2
|
1.0
|
|
C
|
A:ASP21
|
4.5
|
12.9
|
1.0
|
|
N
|
A:ILE28
|
4.5
|
11.4
|
1.0
|
|
CA
|
A:ILE28
|
4.6
|
11.8
|
1.0
|
|
N
|
A:ASP23
|
4.6
|
15.1
|
1.0
|
|
CB
|
A:ASP23
|
4.7
|
18.2
|
1.0
|
|
O
|
A:HOH370
|
4.7
|
17.4
|
1.0
|
|
CA
|
A:ASP25
|
4.7
|
16.2
|
1.0
|
|
N
|
A:GLY24
|
4.8
|
14.2
|
1.0
|
|
O
|
A:HOH375
|
4.8
|
20.8
|
1.0
|
|
N
|
A:LYS22
|
4.8
|
13.7
|
1.0
|
|
CB
|
A:THR27
|
4.8
|
16.4
|
1.0
|
|
CG2
|
A:THR29
|
4.9
|
12.1
|
1.0
|
|
N
|
A:THR29
|
4.9
|
10.6
|
1.0
|
|
N
|
A:GLY26
|
4.9
|
14.7
|
1.0
|
|
CA
|
A:ASP23
|
4.9
|
16.4
|
1.0
|
|
C
|
A:ASP25
|
5.0
|
16.1
|
1.0
|
|
Calcium binding site 4 out
of 16 in 5dow
Go back to
Calcium Binding Sites List in 5dow
Calcium binding site 4 out
of 16 in the Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca205
b:19.7
occ:1.00
|
O
|
A:GLN136
|
2.3
|
17.4
|
1.0
|
|
OD1
|
A:ASP130
|
2.3
|
20.9
|
1.0
|
|
OD1
|
A:ASP134
|
2.3
|
21.5
|
1.0
|
|
OD1
|
A:ASP132
|
2.3
|
22.4
|
1.0
|
|
O
|
A:HOH328
|
2.4
|
20.3
|
1.0
|
|
OE1
|
A:GLU141
|
2.5
|
17.7
|
1.0
|
|
OE2
|
A:GLU141
|
2.6
|
18.8
|
1.0
|
|
CD
|
A:GLU141
|
2.9
|
17.1
|
1.0
|
|
CG
|
A:ASP132
|
3.1
|
22.3
|
1.0
|
|
CG
|
A:ASP134
|
3.2
|
23.2
|
1.0
|
|
CG
|
A:ASP130
|
3.4
|
19.3
|
1.0
|
|
OD2
|
A:ASP132
|
3.4
|
30.3
|
1.0
|
|
C
|
A:GLN136
|
3.5
|
17.6
|
1.0
|
|
OD2
|
A:ASP134
|
3.6
|
24.6
|
1.0
|
|
CA
|
A:ASP130
|
4.1
|
19.9
|
1.0
|
|
CB
|
A:ASP130
|
4.1
|
19.9
|
1.0
|
|
N
|
A:ASP134
|
4.2
|
21.0
|
1.0
|
|
N
|
A:GLN136
|
4.2
|
18.9
|
1.0
|
|
OD2
|
A:ASP130
|
4.3
|
23.8
|
1.0
|
|
N
|
A:ASP132
|
4.3
|
19.8
|
1.0
|
|
N
|
A:VAL137
|
4.3
|
17.4
|
1.0
|
|
CA
|
A:VAL137
|
4.3
|
17.4
|
1.0
|
|
CB
|
A:ASP134
|
4.4
|
24.6
|
1.0
|
|
CG
|
A:GLU141
|
4.4
|
17.5
|
1.0
|
|
CB
|
A:ASP132
|
4.4
|
21.4
|
1.0
|
|
CA
|
A:GLN136
|
4.4
|
18.0
|
1.0
|
|
N
|
A:GLY133
|
4.4
|
20.9
|
1.0
|
|
N
|
A:ASN138
|
4.5
|
17.0
|
1.0
|
|
C
|
A:ASP130
|
4.5
|
21.3
|
1.0
|
|
N
|
A:ILE131
|
4.6
|
20.6
|
1.0
|
|
CA
|
A:ASP132
|
4.7
|
19.5
|
1.0
|
|
CA
|
A:ASP134
|
4.7
|
22.4
|
1.0
|
|
C
|
A:ASP132
|
4.8
|
20.9
|
1.0
|
|
N
|
A:GLY135
|
4.8
|
24.1
|
1.0
|
|
C
|
A:VAL137
|
4.9
|
15.9
|
1.0
|
|
C
|
A:ASP134
|
4.9
|
24.2
|
1.0
|
|
Calcium binding site 5 out
of 16 in 5dow
Go back to
Calcium Binding Sites List in 5dow
Calcium binding site 5 out
of 16 in the Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca201
b:13.7
occ:1.00
|
O
|
C:HOH455
|
2.3
|
16.7
|
1.0
|
|
O
|
C:TYR100
|
2.3
|
15.4
|
1.0
|
|
OD1
|
C:ASP94
|
2.3
|
14.4
|
1.0
|
|
OD1
|
C:ASP96
|
2.4
|
15.0
|
1.0
|
|
OD1
|
C:ASN98
|
2.4
|
13.3
|
1.0
|
|
OE1
|
C:GLU105
|
2.5
|
12.7
|
1.0
|
|
OE2
|
C:GLU105
|
2.5
|
12.3
|
1.0
|
|
CD
|
C:GLU105
|
2.8
|
11.9
|
1.0
|
|
CG
|
C:ASP96
|
3.3
|
17.3
|
1.0
|
|
CG
|
C:ASN98
|
3.3
|
14.8
|
1.0
|
|
C
|
C:TYR100
|
3.5
|
14.2
|
1.0
|
|
CG
|
C:ASP94
|
3.5
|
13.2
|
1.0
|
|
OD2
|
C:ASP96
|
3.7
|
18.5
|
1.0
|
|
ND2
|
C:ASN98
|
4.1
|
16.2
|
1.0
|
|
N
|
C:ASN98
|
4.1
|
14.5
|
1.0
|
|
N
|
C:TYR100
|
4.1
|
14.3
|
1.0
|
|
N
|
C:ASP96
|
4.2
|
17.3
|
1.0
|
|
CA
|
C:ASP94
|
4.2
|
14.4
|
1.0
|
|
CB
|
C:ASN98
|
4.3
|
14.8
|
1.0
|
|
CG
|
C:GLU105
|
4.3
|
9.4
|
1.0
|
|
CA
|
C:TYR100
|
4.3
|
13.5
|
1.0
|
|
OD2
|
C:ASP94
|
4.4
|
13.2
|
1.0
|
|
C
|
C:ASP94
|
4.4
|
14.6
|
1.0
|
|
CB
|
C:ASP94
|
4.4
|
12.1
|
1.0
|
|
N
|
C:ILE101
|
4.4
|
12.6
|
1.0
|
|
N
|
C:LYS95
|
4.4
|
16.3
|
1.0
|
|
CB
|
C:ASP96
|
4.5
|
17.5
|
1.0
|
|
O
|
C:HOH444
|
4.5
|
21.8
|
1.0
|
|
N
|
C:GLY97
|
4.5
|
17.1
|
1.0
|
|
CA
|
C:ILE101
|
4.5
|
11.9
|
1.0
|
|
CA
|
C:ASN98
|
4.6
|
15.0
|
1.0
|
|
CA
|
C:ASP96
|
4.7
|
18.4
|
1.0
|
|
O
|
C:HOH337
|
4.7
|
18.6
|
1.0
|
|
N
|
C:SER102
|
4.7
|
13.1
|
1.0
|
|
CB
|
C:TYR100
|
4.7
|
14.4
|
1.0
|
|
N
|
C:GLY99
|
4.8
|
14.1
|
1.0
|
|
C
|
C:ASP96
|
4.8
|
17.2
|
1.0
|
|
O
|
C:ASP94
|
4.9
|
13.1
|
1.0
|
|
C
|
C:ASN98
|
4.9
|
14.4
|
1.0
|
|
Calcium binding site 6 out
of 16 in 5dow
Go back to
Calcium Binding Sites List in 5dow
Calcium binding site 6 out
of 16 in the Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca202
b:16.0
occ:1.00
|
OD1
|
C:ASP130
|
2.3
|
16.5
|
1.0
|
|
OD1
|
C:ASP132
|
2.3
|
20.5
|
1.0
|
|
O
|
C:GLN136
|
2.3
|
16.2
|
1.0
|
|
OD1
|
C:ASP134
|
2.3
|
22.5
|
1.0
|
|
OE1
|
C:GLU141
|
2.5
|
13.9
|
1.0
|
|
O
|
C:HOH320
|
2.5
|
21.8
|
1.0
|
|
OE2
|
C:GLU141
|
2.6
|
14.0
|
1.0
|
|
CD
|
C:GLU141
|
2.9
|
14.2
|
1.0
|
|
CG
|
C:ASP132
|
3.2
|
23.4
|
1.0
|
|
CG
|
C:ASP134
|
3.3
|
25.9
|
1.0
|
|
CG
|
C:ASP130
|
3.4
|
17.9
|
1.0
|
|
OD2
|
C:ASP132
|
3.5
|
29.4
|
1.0
|
|
C
|
C:GLN136
|
3.5
|
14.9
|
1.0
|
|
OD2
|
C:ASP134
|
3.8
|
28.4
|
1.0
|
|
N
|
C:ASP134
|
4.1
|
25.0
|
1.0
|
|
N
|
C:GLN136
|
4.2
|
16.1
|
1.0
|
|
CA
|
C:ASP130
|
4.2
|
16.1
|
1.0
|
|
CB
|
C:ASP130
|
4.2
|
16.8
|
1.0
|
|
OD2
|
C:ASP130
|
4.2
|
20.5
|
1.0
|
|
N
|
C:ASP132
|
4.3
|
21.4
|
1.0
|
|
N
|
C:VAL137
|
4.3
|
12.4
|
1.0
|
|
CA
|
C:VAL137
|
4.4
|
12.4
|
1.0
|
|
CA
|
C:GLN136
|
4.4
|
15.9
|
1.0
|
|
CB
|
C:ASP134
|
4.4
|
25.0
|
1.0
|
|
CG
|
C:GLU141
|
4.4
|
13.3
|
1.0
|
|
ND2
|
C:ASN138
|
4.4
|
19.0
|
1.0
|
|
CB
|
C:ASP132
|
4.5
|
22.0
|
1.0
|
|
N
|
C:GLY133
|
4.5
|
22.3
|
1.0
|
|
N
|
C:ASN138
|
4.5
|
12.6
|
1.0
|
|
N
|
C:ILE131
|
4.6
|
17.0
|
1.0
|
|
C
|
C:ASP130
|
4.6
|
16.2
|
1.0
|
|
CA
|
C:ASP134
|
4.7
|
25.7
|
1.0
|
|
CA
|
C:ASP132
|
4.7
|
21.7
|
1.0
|
|
N
|
C:GLY135
|
4.7
|
19.6
|
1.0
|
|
C
|
C:ASP132
|
4.9
|
24.5
|
1.0
|
|
C
|
C:ASP134
|
4.9
|
22.2
|
1.0
|
|
C
|
C:VAL137
|
4.9
|
12.0
|
1.0
|
|
CB
|
C:GLN136
|
5.0
|
16.4
|
1.0
|
|
CG
|
C:ASN138
|
5.0
|
16.7
|
1.0
|
|
Calcium binding site 7 out
of 16 in 5dow
Go back to
Calcium Binding Sites List in 5dow
Calcium binding site 7 out
of 16 in the Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca203
b:16.5
occ:1.00
|
OD1
|
C:ASN61
|
2.3
|
17.3
|
1.0
|
|
OD1
|
C:ASP57
|
2.3
|
15.2
|
1.0
|
|
OD1
|
C:ASP59
|
2.4
|
16.7
|
1.0
|
|
O
|
C:HOH309
|
2.4
|
17.2
|
1.0
|
|
OE1
|
C:GLU68
|
2.5
|
13.3
|
1.0
|
|
O
|
C:THR63
|
2.5
|
13.5
|
1.0
|
|
O
|
C:HOH391
|
2.5
|
17.8
|
1.0
|
|
OE2
|
C:GLU68
|
2.6
|
15.6
|
1.0
|
|
CD
|
C:GLU68
|
2.9
|
14.5
|
1.0
|
|
CG
|
C:ASN61
|
3.2
|
16.5
|
1.0
|
|
CG
|
C:ASP59
|
3.4
|
18.6
|
1.0
|
|
CG
|
C:ASP57
|
3.4
|
15.2
|
1.0
|
|
ND2
|
C:ASN61
|
3.5
|
18.8
|
1.0
|
|
C
|
C:THR63
|
3.6
|
14.0
|
1.0
|
|
OD2
|
C:ASP59
|
3.9
|
20.2
|
1.0
|
|
CB
|
C:ASP57
|
4.2
|
15.7
|
1.0
|
|
CA
|
C:ASP57
|
4.3
|
15.0
|
1.0
|
|
OD2
|
C:ASP57
|
4.3
|
18.6
|
1.0
|
|
OG1
|
C:THR63
|
4.3
|
14.1
|
1.0
|
|
CG
|
C:GLU68
|
4.4
|
14.1
|
1.0
|
|
N
|
C:ILE64
|
4.4
|
12.2
|
1.0
|
|
N
|
C:THR63
|
4.4
|
13.2
|
1.0
|
|
CA
|
C:ILE64
|
4.4
|
12.9
|
1.0
|
|
N
|
C:ALA58
|
4.4
|
15.3
|
1.0
|
|
N
|
C:ASP59
|
4.4
|
16.8
|
1.0
|
|
N
|
C:ASP65
|
4.5
|
12.8
|
1.0
|
|
N
|
C:ASN61
|
4.6
|
14.1
|
1.0
|
|
CB
|
C:ASN61
|
4.6
|
16.0
|
1.0
|
|
CA
|
C:THR63
|
4.6
|
13.8
|
1.0
|
|
OD2
|
C:ASP65
|
4.6
|
19.6
|
1.0
|
|
O
|
C:HOH328
|
4.7
|
19.7
|
1.0
|
|
CB
|
C:ASP59
|
4.7
|
17.6
|
1.0
|
|
CG
|
C:ASP65
|
4.8
|
15.6
|
1.0
|
|
O
|
C:HOH491
|
4.8
|
21.2
|
1.0
|
|
C
|
C:ILE64
|
4.8
|
13.1
|
1.0
|
|
C
|
C:ASP57
|
4.9
|
16.3
|
1.0
|
|
CA
|
C:ASN61
|
4.9
|
14.7
|
1.0
|
|
CA
|
C:ASP59
|
5.0
|
17.5
|
1.0
|
|
N
|
C:GLY60
|
5.0
|
16.3
|
1.0
|
|
Calcium binding site 8 out
of 16 in 5dow
Go back to
Calcium Binding Sites List in 5dow
Calcium binding site 8 out
of 16 in the Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca204
b:15.1
occ:1.00
|
OD1
|
C:ASP21
|
2.3
|
13.5
|
1.0
|
|
O
|
C:THR27
|
2.3
|
16.0
|
1.0
|
|
OD1
|
C:ASP23
|
2.3
|
15.8
|
1.0
|
|
O
|
C:HOH363
|
2.4
|
16.6
|
1.0
|
|
OE2
|
C:GLU32
|
2.4
|
13.5
|
1.0
|
|
OD1
|
C:ASP25
|
2.4
|
16.9
|
1.0
|
|
OE1
|
C:GLU32
|
2.4
|
13.7
|
1.0
|
|
CD
|
C:GLU32
|
2.7
|
13.2
|
1.0
|
|
CG
|
C:ASP23
|
3.3
|
15.9
|
1.0
|
|
CG
|
C:ASP25
|
3.3
|
19.0
|
1.0
|
|
CG
|
C:ASP21
|
3.4
|
15.1
|
1.0
|
|
C
|
C:THR27
|
3.5
|
13.1
|
1.0
|
|
OD2
|
C:ASP23
|
3.6
|
19.4
|
1.0
|
|
OD2
|
C:ASP25
|
3.9
|
23.8
|
1.0
|
|
OG1
|
C:THR27
|
4.0
|
22.0
|
1.0
|
|
CA
|
C:ASP21
|
4.1
|
15.9
|
1.0
|
|
N
|
C:THR27
|
4.2
|
15.4
|
1.0
|
|
CB
|
C:ASP21
|
4.2
|
14.7
|
1.0
|
|
N
|
C:ASP25
|
4.2
|
16.4
|
1.0
|
|
CG
|
C:GLU32
|
4.2
|
12.8
|
1.0
|
|
OD2
|
C:ASP21
|
4.3
|
17.0
|
1.0
|
|
CB
|
C:ASP25
|
4.4
|
19.1
|
1.0
|
|
CA
|
C:THR27
|
4.4
|
15.7
|
1.0
|
|
C
|
C:ASP21
|
4.5
|
14.7
|
1.0
|
|
N
|
C:ILE28
|
4.5
|
12.7
|
1.0
|
|
CA
|
C:ILE28
|
4.6
|
12.7
|
1.0
|
|
N
|
C:ASP23
|
4.6
|
14.8
|
1.0
|
|
CB
|
C:ASP23
|
4.6
|
16.8
|
1.0
|
|
O
|
C:HOH368
|
4.6
|
14.9
|
1.0
|
|
O
|
C:HOH331
|
4.6
|
33.4
|
1.0
|
|
CA
|
C:ASP25
|
4.7
|
17.8
|
1.0
|
|
N
|
C:LYS22
|
4.8
|
15.2
|
1.0
|
|
N
|
C:GLY24
|
4.8
|
16.4
|
1.0
|
|
CG2
|
C:THR29
|
4.8
|
13.5
|
1.0
|
|
N
|
C:GLY26
|
4.8
|
16.8
|
1.0
|
|
CB
|
C:THR27
|
4.9
|
16.6
|
1.0
|
|
N
|
C:THR29
|
4.9
|
12.4
|
1.0
|
|
CA
|
C:ASP23
|
4.9
|
15.8
|
1.0
|
|
O
|
C:ASP21
|
5.0
|
14.4
|
1.0
|
|
O
|
C:HOH396
|
5.0
|
17.0
|
1.0
|
|
C
|
C:ASP25
|
5.0
|
17.3
|
1.0
|
|
Calcium binding site 9 out
of 16 in 5dow
Go back to
Calcium Binding Sites List in 5dow
Calcium binding site 9 out
of 16 in the Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca201
b:13.9
occ:1.00
|
OD1
|
E:ASP57
|
2.3
|
13.7
|
1.0
|
|
O
|
E:THR63
|
2.3
|
13.4
|
1.0
|
|
OD1
|
E:ASP59
|
2.3
|
13.2
|
1.0
|
|
OE1
|
E:GLU68
|
2.3
|
14.0
|
1.0
|
|
O
|
E:HOH354
|
2.4
|
14.2
|
1.0
|
|
OD1
|
E:ASN61
|
2.4
|
13.4
|
1.0
|
|
OE2
|
E:GLU68
|
2.5
|
11.2
|
1.0
|
|
CD
|
E:GLU68
|
2.8
|
11.3
|
1.0
|
|
CG
|
E:ASP59
|
3.3
|
14.8
|
1.0
|
|
CG
|
E:ASN61
|
3.4
|
13.8
|
1.0
|
|
CG
|
E:ASP57
|
3.5
|
15.2
|
1.0
|
|
C
|
E:THR63
|
3.5
|
12.8
|
1.0
|
|
OD2
|
E:ASP59
|
3.6
|
17.8
|
1.0
|
|
ND2
|
E:ASN61
|
4.0
|
13.4
|
1.0
|
|
N
|
E:THR63
|
4.1
|
14.8
|
1.0
|
|
N
|
E:ASN61
|
4.1
|
14.7
|
1.0
|
|
CA
|
E:ASP57
|
4.2
|
14.7
|
1.0
|
|
CG
|
E:GLU68
|
4.3
|
10.3
|
1.0
|
|
O
|
E:HOH408
|
4.3
|
16.2
|
1.0
|
|
CB
|
E:ASP57
|
4.4
|
15.5
|
1.0
|
|
OD2
|
E:ASP57
|
4.4
|
16.1
|
1.0
|
|
N
|
E:ILE64
|
4.4
|
12.3
|
1.0
|
|
CB
|
E:ASN61
|
4.4
|
15.7
|
1.0
|
|
N
|
E:ASP59
|
4.4
|
13.8
|
1.0
|
|
CA
|
E:THR63
|
4.4
|
15.7
|
1.0
|
|
N
|
E:GLY62
|
4.5
|
14.3
|
1.0
|
|
CA
|
E:ILE64
|
4.5
|
12.6
|
1.0
|
|
CB
|
E:ASP59
|
4.5
|
14.9
|
1.0
|
|
C
|
E:ASP57
|
4.6
|
14.8
|
1.0
|
|
N
|
E:GLY60
|
4.6
|
14.0
|
1.0
|
|
CA
|
E:ASN61
|
4.6
|
15.4
|
1.0
|
|
N
|
E:ASP65
|
4.6
|
11.7
|
1.0
|
|
OG1
|
E:THR63
|
4.7
|
15.0
|
1.0
|
|
C
|
E:ASN61
|
4.7
|
13.6
|
1.0
|
|
CA
|
E:ASP59
|
4.8
|
13.9
|
1.0
|
|
C
|
E:ASP59
|
4.8
|
13.3
|
1.0
|
|
OD1
|
E:ASP65
|
4.8
|
14.7
|
1.0
|
|
N
|
E:ALA58
|
4.9
|
14.1
|
1.0
|
|
C
|
E:ILE64
|
4.9
|
11.1
|
1.0
|
|
Calcium binding site 10 out
of 16 in 5dow
Go back to
Calcium Binding Sites List in 5dow
Calcium binding site 10 out
of 16 in the Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca202
b:13.2
occ:1.00
|
O
|
E:THR27
|
2.3
|
13.5
|
1.0
|
|
OD1
|
E:ASP21
|
2.3
|
12.9
|
1.0
|
|
OD1
|
E:ASP23
|
2.3
|
14.6
|
1.0
|
|
OE2
|
E:GLU32
|
2.4
|
13.4
|
1.0
|
|
OD1
|
E:ASP25
|
2.4
|
12.6
|
1.0
|
|
O
|
E:HOH402
|
2.5
|
15.4
|
1.0
|
|
OE1
|
E:GLU32
|
2.5
|
11.7
|
1.0
|
|
CD
|
E:GLU32
|
2.8
|
12.3
|
1.0
|
|
CG
|
E:ASP23
|
3.3
|
15.6
|
1.0
|
|
CG
|
E:ASP25
|
3.4
|
14.6
|
1.0
|
|
CG
|
E:ASP21
|
3.4
|
13.4
|
1.0
|
|
C
|
E:THR27
|
3.5
|
12.5
|
1.0
|
|
OD2
|
E:ASP23
|
3.7
|
17.6
|
1.0
|
|
OD2
|
E:ASP25
|
4.0
|
17.3
|
1.0
|
|
CA
|
E:ASP21
|
4.1
|
11.7
|
1.0
|
|
CB
|
E:ASP21
|
4.2
|
11.3
|
1.0
|
|
N
|
E:THR27
|
4.2
|
12.9
|
1.0
|
|
N
|
E:ASP25
|
4.3
|
14.6
|
1.0
|
|
CG
|
E:GLU32
|
4.3
|
12.4
|
1.0
|
|
OD2
|
E:ASP21
|
4.3
|
13.4
|
1.0
|
|
CA
|
E:THR27
|
4.4
|
14.4
|
1.0
|
|
N
|
E:ILE28
|
4.4
|
11.8
|
1.0
|
|
C
|
E:ASP21
|
4.5
|
12.1
|
1.0
|
|
CB
|
E:ASP25
|
4.5
|
15.7
|
1.0
|
|
O
|
E:HOH377
|
4.5
|
24.5
|
1.0
|
|
CA
|
E:ILE28
|
4.5
|
11.6
|
1.0
|
|
N
|
E:ASP23
|
4.6
|
15.5
|
1.0
|
|
CB
|
E:THR27
|
4.7
|
15.1
|
1.0
|
|
CB
|
E:ASP23
|
4.7
|
14.6
|
1.0
|
|
N
|
E:LYS22
|
4.8
|
13.9
|
1.0
|
|
N
|
E:GLY24
|
4.8
|
14.9
|
1.0
|
|
CA
|
E:ASP25
|
4.8
|
16.0
|
1.0
|
|
O
|
E:HOH327
|
4.8
|
19.9
|
1.0
|
|
N
|
E:GLY26
|
4.9
|
13.5
|
1.0
|
|
O
|
E:HOH363
|
4.9
|
22.1
|
1.0
|
|
O
|
E:ASP21
|
5.0
|
14.5
|
1.0
|
|
CA
|
E:ASP23
|
5.0
|
15.7
|
1.0
|
|
Reference:
J.P.Keller,
J.P.Keller.
N/A N/A.
ISSN: ISSN 2059-7983
PubMed: 28045382
DOI: 10.1107/S2059798316019318
Page generated: Sun Jul 14 18:06:19 2024
|
