Atomistry » Calcium » PDB 5dzv-5egi » 5e0f
Atomistry »
  Calcium »
    PDB 5dzv-5egi »
      5e0f »

Calcium in PDB 5e0f: Human Pancreatic Alpha-Amylase in Complex with Mini-Montbretin A

Enzymatic activity of Human Pancreatic Alpha-Amylase in Complex with Mini-Montbretin A

All present enzymatic activity of Human Pancreatic Alpha-Amylase in Complex with Mini-Montbretin A:
3.2.1.1;

Protein crystallography data

The structure of Human Pancreatic Alpha-Amylase in Complex with Mini-Montbretin A, PDB code: 5e0f was solved by S.Caner, G.D.Brayer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.07 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.320, 73.190, 133.740, 90.00, 90.00, 90.00
R / Rfree (%) 15.5 / 18.1

Other elements in 5e0f:

The structure of Human Pancreatic Alpha-Amylase in Complex with Mini-Montbretin A also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Human Pancreatic Alpha-Amylase in Complex with Mini-Montbretin A (pdb code 5e0f). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Human Pancreatic Alpha-Amylase in Complex with Mini-Montbretin A, PDB code: 5e0f:

Calcium binding site 1 out of 1 in 5e0f

Go back to Calcium Binding Sites List in 5e0f
Calcium binding site 1 out of 1 in the Human Pancreatic Alpha-Amylase in Complex with Mini-Montbretin A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Pancreatic Alpha-Amylase in Complex with Mini-Montbretin A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:11.9
occ:1.00
O A:ARG158 2.4 13.8 1.0
OD1 A:ASN100 2.4 12.7 1.0
O A:HIS201 2.4 11.7 1.0
O A:HOH810 2.5 12.9 1.0
OD1 A:ASP167 2.5 12.5 1.0
OD2 A:ASP167 2.5 13.7 1.0
O A:HOH643 2.5 11.6 1.0
O A:HOH888 2.5 12.9 1.0
CG A:ASP167 2.8 13.5 1.0
CG A:ASN100 3.4 12.2 1.0
HD21 A:ASN100 3.4 14.8 1.0
C A:ARG158 3.5 14.8 1.0
HB3 A:HIS201 3.5 14.4 1.0
C A:HIS201 3.6 10.3 1.0
HA A:ARG158 3.6 17.7 1.0
ND2 A:ASN100 3.8 12.3 1.0
HA A:MET202 4.0 13.2 1.0
HD22 A:ASN137 4.0 17.4 1.0
HG2 A:MET202 4.0 15.5 1.0
CA A:ARG158 4.1 14.7 1.0
HA A:ASP159 4.2 17.7 1.0
CB A:HIS201 4.3 12.0 1.0
O A:ASN100 4.3 10.8 1.0
CB A:ASP167 4.4 15.8 1.0
HD21 A:ASN137 4.4 17.4 1.0
O A:HOH710 4.4 14.8 1.0
CA A:HIS201 4.5 11.9 1.0
N A:ASP159 4.5 12.7 1.0
HB2 A:HIS201 4.5 14.4 1.0
ND2 A:ASN137 4.5 14.5 1.0
N A:MET202 4.6 11.0 1.0
O A:CYS160 4.6 14.2 1.0
HA A:HIS201 4.6 14.3 1.0
O A:VAL157 4.6 12.8 1.0
HD12 A:LEU170 4.7 13.9 1.0
HD22 A:ASN100 4.7 14.8 1.0
CA A:MET202 4.7 11.0 1.0
HB3 A:ARG158 4.7 14.8 1.0
HB3 A:ASP167 4.8 19.0 1.0
CB A:ASN100 4.8 10.0 1.0
HA A:ASP167 4.8 15.7 1.0
CA A:ASP159 4.8 14.8 1.0
HB2 A:ASP167 4.8 19.0 1.0
HA A:ASN100 4.8 14.5 1.0
O A:LEU168 4.9 12.7 1.0
CG A:MET202 4.9 12.9 1.0
O A:HOH680 4.9 13.2 1.0
HG3 A:MET202 4.9 15.5 1.0
HB2 A:ASN100 5.0 12.0 1.0

Reference:

S.Caner, G.D.Brayer. Human Pancreatic Alpha-Amylase in Complex with Mini-Montbretin A To Be Published.
Page generated: Sun Jul 14 18:12:20 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy