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Calcium in PDB 5e2t: Crystal Structure of Anti-Tau Antibody AT8 Fab

Protein crystallography data

The structure of Crystal Structure of Anti-Tau Antibody AT8 Fab, PDB code: 5e2t was solved by T.Malia, A.Teplyakov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.10
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.870, 108.800, 109.270, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 24.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Anti-Tau Antibody AT8 Fab (pdb code 5e2t). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Anti-Tau Antibody AT8 Fab, PDB code: 5e2t:

Calcium binding site 1 out of 1 in 5e2t

Go back to Calcium Binding Sites List in 5e2t
Calcium binding site 1 out of 1 in the Crystal Structure of Anti-Tau Antibody AT8 Fab


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Anti-Tau Antibody AT8 Fab within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca1001

b:42.2
occ:0.50
O H:HOH1248 2.3 36.6 1.0
O H:HOH1103 2.5 31.7 1.0
O H:HOH1121 2.7 40.6 1.0
OE2 H:GLU89 4.4 34.3 1.0
O H:HOH1118 4.6 32.0 1.0
O H:HOH1144 4.6 35.9 1.0
OE1 H:GLU89 4.7 32.8 1.0
O H:PRO42 4.8 43.4 0.5
CD H:GLU89 5.0 36.6 1.0

Reference:

T.J.Malia, A.Teplyakov, R.Ernst, S.J.Wu, E.R.Lacy, X.Liu, M.Vandermeeren, M.Mercken, J.Luo, R.W.Sweet, G.L.Gilliland. Epitope Mapping and Structural Basis For the Recognition of Phosphorylated Tau By the Anti-Tau Antibody AT8. Proteins V. 84 427 2016.
ISSN: ESSN 1097-0134
PubMed: 26800003
DOI: 10.1002/PROT.24988
Page generated: Sat Dec 12 05:22:41 2020

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