Calcium in PDB 5e37: Redox Protein From Chlamydomonas Reinhardtii

The structure of Redox Protein From Chlamydomonas Reinhardtii, PDB code: 5e37 was solved by R.Charoenwattansatien, A.K.Hochmal, K.Zinzius, R.Muto, H.Tanaka, M.Hippler, G.Kurisu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	85.960, 55.190, 89.580, 90.00, 101.00, 90.00
R / Rfree (%)	19.9 / 23.3

The binding sites of Calcium atom in the Redox Protein From Chlamydomonas Reinhardtii (pdb code 5e37). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Redox Protein From Chlamydomonas Reinhardtii, PDB code: 5e37:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in the Redox Protein From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Redox Protein From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:33.7 occ:1.00 OD1 A:ASP39 2.1 41.4 1.0 O A:HIS45 2.3 33.9 1.0 OE2 A:GLU50 2.3 35.9 1.0 O A:HOH648 2.4 36.5 1.0 OD1 A:ASN43 2.5 47.6 1.0 OD2 A:ASP41 2.5 41.6 1.0 OE1 A:GLU50 2.6 30.4 1.0 CD A:GLU50 2.7 30.9 1.0 CG A:ASP39 3.2 47.2 1.0 CG A:ASN43 3.3 54.1 1.0 CG A:ASP41 3.4 36.9 1.0 C A:HIS45 3.5 38.4 1.0 OD1 A:ASP41 3.7 38.8 1.0 OD2 A:ASP39 3.9 43.4 1.0 ND2 A:ASN43 3.9 52.3 1.0 CA A:ASP39 4.1 39.2 1.0 CB A:ASP39 4.1 42.9 1.0 N A:HIS45 4.2 47.1 1.0 N A:ASN43 4.2 45.5 1.0 CB A:ASN43 4.2 49.1 1.0 CG A:GLU50 4.2 30.2 1.0 C A:ASP39 4.4 39.0 1.0 N A:ILE46 4.4 32.1 1.0 CA A:HIS45 4.4 42.4 1.0 N A:ASP41 4.4 32.8 1.0 CA A:ILE46 4.5 29.4 1.0 N A:ASP47 4.6 32.6 1.0 N A:VAL40 4.6 35.3 1.0 CA A:ASN43 4.6 44.4 1.0 CB A:ASP41 4.7 39.8 1.0 CD2 A:HIS45 4.7 60.1 1.0 N A:GLY42 4.8 44.1 1.0 OD2 A:ASP47 4.8 40.3 1.0 C A:ASN43 4.8 46.6 1.0 O A:ASP39 4.9 38.4 1.0 CA A:ASP41 4.9 37.9 1.0 N A:GLY44 4.9 47.1 1.0 CG A:HIS45 4.9 56.5 1.0

Calcium binding site 2 out of 8 in the Redox Protein From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Redox Protein From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:36.9 occ:1.00 OD2 A:ASP84 1.8 41.7 1.0 O A:HOH503 1.8 23.8 1.0 OD1 A:ASP88 2.3 57.4 1.0 O A:VAL90 2.4 47.3 1.0 OE2 A:GLU95 2.5 47.1 1.0 OD1 A:ASN86 2.6 61.6 1.0 OE1 A:GLU95 2.9 51.7 1.0 CD A:GLU95 3.0 44.7 1.0 CG A:ASP84 3.0 52.8 1.0 CG A:ASP88 3.5 58.7 1.0 CG A:ASN86 3.6 57.3 1.0 C A:VAL90 3.7 44.2 1.0 CA A:ASP84 3.8 60.1 1.0 CB A:ASP84 3.9 58.5 1.0 ND2 A:ASN86 4.0 58.6 1.0 OD1 A:ASP84 4.0 52.7 1.0 N A:ASP88 4.0 59.8 1.0 N A:VAL90 4.1 44.3 1.0 OD2 A:ASP88 4.2 57.0 1.0 C A:ASP84 4.2 67.8 1.0 N A:LYS87 4.3 74.5 1.0 N A:VAL85 4.4 77.7 1.0 CA A:VAL90 4.5 42.5 1.0 CG A:GLU95 4.5 39.7 1.0 CB A:ASP88 4.6 54.9 1.0 N A:ILE91 4.6 38.9 1.0 N A:ASN86 4.6 69.2 1.0 CA A:ILE91 4.7 36.5 1.0 CA A:ASP88 4.7 56.4 1.0 CG2 A:VAL90 4.7 47.3 1.0 C A:ASP88 4.8 55.4 1.0 O A:HOH543 4.8 41.2 1.0 N A:SER92 4.8 39.0 1.0 N A:GLY89 4.8 52.7 1.0 CB A:ASN86 4.9 61.8 1.0 CA A:LYS87 4.9 67.7 1.0 O A:ASP84 4.9 67.0 1.0 C A:ASN86 5.0 74.6 1.0 C A:LYS87 5.0 66.8 1.0

Calcium binding site 3 out of 8 in the Redox Protein From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Redox Protein From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca403 b:15.2 occ:1.00 OD1 A:ASP121 2.3 16.1 1.0 OE1 A:GLU132 2.4 15.0 1.0 OD1 A:ASN125 2.4 18.6 1.0 O A:THR127 2.4 16.1 1.0 O A:HOH575 2.4 16.1 1.0 OE2 A:GLU132 2.5 19.2 1.0 OG A:SER123 2.5 17.7 1.0 CD A:GLU132 2.8 15.7 1.0 CG A:ASP121 3.4 16.2 1.0 CG A:ASN125 3.5 15.3 1.0 CB A:SER123 3.6 16.7 1.0 C A:THR127 3.6 15.3 1.0 N A:SER123 4.0 15.9 1.0 OD2 A:ASP121 4.1 15.6 1.0 ND2 A:ASN125 4.1 17.3 1.0 CA A:SER123 4.2 16.6 1.0 O A:SER199 4.3 19.1 1.0 CB A:ASP121 4.3 13.6 1.0 CG A:GLU132 4.3 15.2 1.0 CA A:ASP121 4.4 15.8 1.0 CA A:ILE128 4.4 14.1 1.0 N A:GLY124 4.4 16.5 1.0 N A:THR127 4.4 15.8 1.0 N A:ILE128 4.4 13.5 1.0 N A:GLY129 4.5 13.0 1.0 N A:ASN125 4.5 17.3 1.0 CB A:ASN125 4.6 17.3 1.0 C A:ASP121 4.6 18.3 1.0 CA A:THR127 4.6 15.0 1.0 O A:LEU200 4.6 17.3 1.0 OE1 A:GLN163 4.6 16.4 1.0 C A:SER123 4.7 18.3 1.0 OG1 A:THR127 4.7 17.3 1.0 N A:LYS122 4.8 18.2 1.0 C A:ILE128 4.9 13.8 1.0 CA A:ASN125 5.0 17.0 1.0 N A:GLY126 5.0 16.7 1.0

Calcium binding site 4 out of 8 in the Redox Protein From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Redox Protein From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca404 b:15.8 occ:1.00 OD1 A:ASP159 2.3 16.6 1.0 OD1 A:ASP157 2.3 14.2 1.0 OE1 A:GLU165 2.3 15.8 1.0 OE1 A:GLU168 2.4 14.5 1.0 O A:GLN163 2.4 13.3 1.0 OG A:SER161 2.5 15.2 1.0 OE2 A:GLU168 2.6 16.4 1.0 CD A:GLU168 2.8 14.3 1.0 CD A:GLU165 3.2 15.0 1.0 CG A:ASP159 3.4 21.1 1.0 CG A:ASP157 3.4 15.8 1.0 OE2 A:GLU165 3.4 18.1 1.0 CB A:SER161 3.6 16.5 1.0 C A:GLN163 3.6 14.1 1.0 OD2 A:ASP159 3.8 26.0 1.0 N A:SER161 4.0 15.7 1.0 CA A:ASP157 4.1 14.3 1.0 CB A:ASP157 4.2 15.2 1.0 OD2 A:ASP157 4.2 15.5 1.0 N A:GLU165 4.3 12.9 1.0 CG A:GLU168 4.3 13.6 1.0 CA A:SER161 4.3 15.3 1.0 N A:GLN163 4.3 15.1 1.0 N A:ASP159 4.4 16.4 1.0 C A:ASP157 4.4 16.2 1.0 CA A:ILE164 4.5 12.9 1.0 N A:ILE164 4.5 14.1 1.0 O A:HOH746 4.5 28.4 1.0 CG A:GLU165 4.6 15.4 1.0 CA A:GLN163 4.6 14.4 1.0 N A:LYS158 4.6 17.1 1.0 CB A:ASP159 4.6 19.8 1.0 N A:ASP160 4.8 17.5 1.0 O A:HOH702 4.8 40.8 1.0 N A:GLY162 4.8 14.4 1.0 CA A:ASP159 4.9 20.1 1.0 C A:ILE164 4.9 12.2 1.0 C A:ASP159 4.9 19.0 1.0 C A:SER161 4.9 14.8 1.0 O A:ASP157 4.9 15.6 1.0 CB A:GLU165 4.9 14.1 1.0

Calcium binding site 5 out of 8 in the Redox Protein From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Redox Protein From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca401 b:28.6 occ:1.00 OD1 C:ASP39 2.1 35.6 1.0 O C:HIS45 2.3 32.1 1.0 OE2 C:GLU50 2.4 29.2 1.0 OD1 C:ASN43 2.4 35.6 1.0 OD1 C:ASP41 2.4 31.0 1.0 O C:HOH564 2.5 33.0 1.0 OE1 C:GLU50 2.6 22.5 1.0 CD C:GLU50 2.8 26.7 1.0 CG C:ASP39 3.3 38.9 1.0 CG C:ASN43 3.3 38.9 1.0 CG C:ASP41 3.4 29.6 1.0 C C:HIS45 3.5 32.6 1.0 OD2 C:ASP41 3.7 31.6 1.0 ND2 C:ASN43 3.9 41.5 1.0 CA C:ASP39 4.1 33.0 1.0 N C:HIS45 4.2 30.8 1.0 OD2 C:ASP39 4.2 34.9 1.0 N C:ASN43 4.2 34.3 1.0 CB C:ASP39 4.2 37.0 1.0 CG C:GLU50 4.3 26.1 1.0 CD2 C:HIS45 4.3 40.7 1.0 N C:ASP41 4.3 26.3 1.0 CB C:ASN43 4.4 37.6 1.0 C C:ASP39 4.4 33.0 1.0 CA C:HIS45 4.4 34.1 1.0 N C:ILE46 4.4 31.5 1.0 N C:VAL40 4.5 28.2 1.0 CA C:ILE46 4.5 29.7 1.0 N C:ASP47 4.6 30.5 1.0 CB C:ASP41 4.6 29.8 1.0 CA C:ASN43 4.7 35.5 1.0 OD2 C:ASP47 4.7 38.7 1.0 NE2 C:HIS45 4.8 42.9 1.0 N C:GLY42 4.8 31.3 1.0 CA C:ASP41 4.8 28.8 1.0 CG C:HIS45 4.8 40.2 1.0 C C:ASN43 4.9 39.1 1.0 C C:ASP41 4.9 31.6 1.0 N C:GLY44 5.0 35.7 1.0 O C:ASP39 5.0 30.8 1.0

Calcium binding site 6 out of 8 in the Redox Protein From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Redox Protein From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca402 b:41.0 occ:1.00 OD1 C:ASP84 2.1 22.7 1.0 O C:HOH727 2.2 43.8 1.0 OD2 C:ASP88 2.4 51.7 1.0 OE1 C:GLU95 2.6 45.9 1.0 O C:VAL90 2.7 39.3 1.0 OE2 C:GLU95 2.7 61.6 1.0 OD1 C:ASN86 2.7 53.7 1.0 CD C:GLU95 3.0 60.3 1.0 CG C:ASN86 3.3 51.8 1.0 CG C:ASP84 3.3 32.6 1.0 CG C:ASP88 3.4 54.3 1.0 ND2 C:ASN86 3.4 48.0 1.0 OD1 C:ASP88 3.7 54.4 1.0 C C:VAL90 3.7 45.7 1.0 OD2 C:ASP84 4.1 41.5 1.0 N C:SER92 4.3 35.9 1.0 N C:ASP88 4.4 55.5 1.0 CB C:ASP84 4.4 41.9 1.0 CA C:ASP84 4.4 49.3 1.0 OG C:SER92 4.5 44.6 1.0 CA C:ILE91 4.5 35.2 1.0 N C:ILE91 4.5 41.4 1.0 N C:ASN86 4.5 63.0 1.0 N C:VAL90 4.5 45.1 1.0 CG C:GLU95 4.6 53.6 1.0 CB C:ASN86 4.6 55.7 1.0 CB C:ASP88 4.6 52.5 1.0 CA C:VAL90 4.7 46.2 1.0 C C:ASP84 4.7 60.8 1.0 N C:LYS87 4.7 62.1 1.0 C C:ASN86 4.8 59.0 1.0 CA C:ASN86 4.8 58.9 1.0 C C:ILE91 4.8 36.4 1.0 CB C:SER92 4.9 39.9 1.0 CA C:ASP88 4.9 54.9 1.0 N C:VAL85 4.9 65.3 1.0

Calcium binding site 7 out of 8 in the Redox Protein From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Redox Protein From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca403 b:13.6 occ:1.00 OD1 C:ASP121 2.2 15.8 1.0 OD1 C:ASN125 2.4 16.4 1.0 O C:THR127 2.4 14.8 1.0 OG C:SER123 2.4 16.0 1.0 O C:HOH542 2.5 15.3 1.0 OE1 C:GLU132 2.5 14.0 1.0 OE2 C:GLU132 2.5 16.6 1.0 CD C:GLU132 2.9 14.8 1.0 CG C:ASP121 3.3 13.8 1.0 CG C:ASN125 3.5 13.7 1.0 CB C:SER123 3.6 16.2 1.0 C C:THR127 3.6 14.6 1.0 OD2 C:ASP121 4.0 16.8 1.0 N C:SER123 4.1 15.8 1.0 ND2 C:ASN125 4.2 17.0 1.0 CA C:SER123 4.3 16.2 1.0 CB C:ASP121 4.3 16.0 1.0 O C:SER199 4.3 17.4 1.0 CG C:GLU132 4.4 13.4 1.0 N C:THR127 4.4 15.4 1.0 CA C:ILE128 4.4 13.4 1.0 N C:ASN125 4.4 16.5 1.0 N C:GLY124 4.4 16.6 1.0 CA C:ASP121 4.4 14.2 1.0 N C:ILE128 4.4 12.7 1.0 N C:GLY129 4.5 13.1 1.0 CA C:THR127 4.6 13.9 1.0 CB C:ASN125 4.6 15.9 1.0 C C:ASP121 4.6 14.5 1.0 O C:LEU200 4.6 13.6 1.0 OG1 C:THR127 4.6 15.8 1.0 OE1 C:GLN163 4.6 13.4 1.0 C C:SER123 4.7 18.8 1.0 N C:LYS122 4.8 16.9 1.0 C C:ILE128 4.9 13.5 1.0 CA C:ASN125 5.0 16.0 1.0 N C:GLY126 5.0 16.0 1.0

Calcium binding site 8 out of 8 in the Redox Protein From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Redox Protein From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca404 b:13.2 occ:1.00 OD1 C:ASP157 2.2 12.3 1.0 OD1 C:ASP159 2.3 14.9 1.0 O C:GLN163 2.3 11.3 1.0 OE1 C:GLU168 2.4 11.5 1.0 OE1 C:GLU165 2.4 14.4 1.0 OG C:SER161 2.5 12.5 1.0 OE2 C:GLU168 2.5 14.1 1.0 CD C:GLU168 2.8 13.0 1.0 CD C:GLU165 3.3 15.0 1.0 CG C:ASP157 3.4 12.1 1.0 CG C:ASP159 3.4 19.0 1.0 OE2 C:GLU165 3.5 16.6 1.0 CB C:SER161 3.5 14.4 1.0 C C:GLN163 3.6 12.9 1.0 OD2 C:ASP159 3.8 23.9 1.0 CA C:ASP157 4.0 13.2 1.0 N C:SER161 4.0 13.3 1.0 CB C:ASP157 4.1 12.6 1.0 CG C:GLU168 4.3 12.8 1.0 OD2 C:ASP157 4.3 13.7 1.0 N C:GLU165 4.3 13.2 1.0 CA C:SER161 4.3 15.1 1.0 N C:GLN163 4.3 12.6 1.0 C C:ASP157 4.4 15.1 1.0 O C:HOH721 4.4 27.1 1.0 N C:ILE164 4.5 11.7 1.0 N C:ASP159 4.5 16.1 1.0 CA C:ILE164 4.5 11.7 1.0 CA C:GLN163 4.6 12.2 1.0 CB C:ASP159 4.6 17.0 1.0 N C:LYS158 4.6 15.7 1.0 CG C:GLU165 4.7 13.6 1.0 N C:ASP160 4.8 15.1 1.0 O C:HOH570 4.8 35.9 1.0 CA C:ASP159 4.8 17.5 1.0 N C:GLY162 4.8 13.0 1.0 C C:SER161 4.9 13.5 1.0 C C:ASP159 4.9 16.1 1.0 O C:ASP157 4.9 13.9 1.0 C C:ILE164 4.9 10.6 1.0 CB C:GLU165 5.0 13.1 1.0

A.K.Hochmal, K.Zinzius, R.Charoenwattanasatien, P.Gabelein, R.Mutoh, H.Tanaka, S.Schulze, G.Liu, M.Scholz, A.Nordhues, J.N.Offenborn, D.Petroutsos, G.Finazzi, C.Fufezan, K.Huang, G.Kurisu, M.Hippler. Calredoxin Represents A Novel Type of Calcium-Dependent Sensor-Responder Connected to Redox Regulation in the Chloroplast Nat Commun V. 7 11847 2016.
ISSN: ESSN 2041-1723
PubMed: 27297041
DOI: 10.1038/NCOMMS11847