Calcium in PDB 5e7g: Crystal Structure of BACOVA_02650 with Xylogluco-Oligosaccharide

The structure of Crystal Structure of BACOVA_02650 with Xylogluco-Oligosaccharide, PDB code: 5e7g was solved by N.M.Koropatkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.19 / 2.37
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	207.390, 207.390, 117.870, 90.00, 90.00, 120.00
R / Rfree (%)	19.8 / 22.6

The binding sites of Calcium atom in the Crystal Structure of BACOVA_02650 with Xylogluco-Oligosaccharide (pdb code 5e7g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of BACOVA_02650 with Xylogluco-Oligosaccharide, PDB code: 5e7g:

Calcium binding site 1 out of 1 in the Crystal Structure of BACOVA_02650 with Xylogluco-Oligosaccharide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of BACOVA_02650 with Xylogluco-Oligosaccharide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca510 b:90.7 occ:1.00 OD2 A:ASP482 2.4 55.4 1.0 OD2 A:ASP323 2.4 54.4 1.0 O A:THR350 2.4 44.2 1.0 O A:HOH608 2.4 41.3 1.0 OD1 A:ASP482 2.4 54.3 1.0 O A:ASN321 2.4 57.4 1.0 O A:ASN348 2.4 74.7 1.0 CG A:ASP482 2.7 52.5 1.0 HB2 A:ASN321 3.2 53.2 1.0 C A:ASN321 3.5 41.5 1.0 CG A:ASP323 3.5 41.9 1.0 C A:THR350 3.5 44.8 1.0 C A:ASN348 3.6 42.1 1.0 HA A:ASN321 3.8 56.0 1.0 HD2 A:TYR322 3.8 58.5 1.0 H A:THR350 3.9 46.6 1.0 HB2 A:TYR322 3.9 49.5 1.0 N A:THR350 3.9 38.9 1.0 CB A:ASN321 4.0 44.4 1.0 HB2 A:ASN348 4.0 47.1 1.0 CA A:ASN321 4.0 46.7 1.0 HA A:CYS351 4.0 65.9 1.0 HA3 A:GLY349 4.1 57.3 1.0 OD1 A:ASP323 4.2 45.1 1.0 C A:GLY349 4.2 46.8 1.0 HB3 A:CYS351 4.2 64.6 1.0 CB A:ASP482 4.2 32.1 1.0 HB3 A:ASN348 4.3 47.1 1.0 OD1 A:ASN483 4.3 58.7 1.0 HB2 A:ASP323 4.3 57.4 1.0 H A:ASN483 4.3 48.2 1.0 CA A:THR350 4.4 52.4 1.0 CB A:ASN348 4.5 39.3 1.0 CA A:GLY349 4.5 47.8 1.0 N A:CYS351 4.5 47.8 1.0 N A:GLY349 4.5 59.7 1.0 CB A:ASP323 4.5 47.8 1.0 CA A:ASN348 4.6 50.6 1.0 HB2 A:ASP482 4.6 38.5 1.0 CA A:CYS351 4.6 54.9 1.0 HB3 A:ASP482 4.6 38.5 1.0 N A:TYR322 4.6 58.2 1.0 HB3 A:ASN321 4.7 53.2 1.0 CD2 A:TYR322 4.7 48.7 1.0 HA A:ASP482 4.7 47.5 1.0 CB A:TYR322 4.8 41.3 1.0 O A:GLY349 4.8 50.3 1.0 CG A:ASN321 4.8 52.8 1.0 HB A:THR350 4.8 55.8 1.0 CB A:CYS351 4.9 53.9 1.0 N A:ASP323 4.9 45.9 1.0 H A:ASN348 4.9 56.9 1.0 H A:ASP323 4.9 55.1 1.0 C A:TYR322 4.9 45.7 1.0 HD21 A:ASN483 4.9 50.9 1.0 CG A:ASN483 5.0 54.5 1.0 N A:ASN483 5.0 40.2 1.0

A.S.Tauzin, K.J.Kwiatkowski, N.I.Orlovsky, C.J.Smith, A.L.Creagh, C.A.Haynes, Z.Wawrzak, H.Brumer, N.M.Koropatkin. Molecular Dissection of Xyloglucan Recognition in A Prominent Human Gut Symbiont. Mbio V. 7 02134 2016.
ISSN: ESSN 2150-7511
PubMed: 27118585
DOI: 10.1128/MBIO.02134-15